Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4137

Experiment: Green bean; epiphytic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4135 and Psyr_4136 are separated by 22 nucleotidesPsyr_4136 and Psyr_4137 are separated by 115 nucleotidesPsyr_4137 and Psyr_4138 overlap by 4 nucleotidesPsyr_4138 and Psyr_4139 are separated by 10 nucleotides Psyr_4135: Psyr_4135 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,926,055 to 4,927,320 _4135 Psyr_4136: Psyr_4136 - BolA-like protein, at 4,927,343 to 4,927,582 _4136 Psyr_4137: Psyr_4137 - Sulfate transporter/antisigma-factor antagonist STAS, at 4,927,698 to 4,928,003 _4137 Psyr_4138: Psyr_4138 - Toluene tolerance, at 4,928,000 to 4,928,650 _4138 Psyr_4139: Psyr_4139 - Mce4/Rv3499c/MTV023.06c protein, at 4,928,661 to 4,929,128 _4139 Position (kb) 4927 4928 4929Strain fitness (log2 ratio) -2 -1 0 1 2at 4927.435 kb on - strand, within Psyr_4136at 4927.435 kb on - strand, within Psyr_4136at 4927.572 kb on - strandat 4927.627 kb on - strandat 4927.645 kb on - strandat 4927.741 kb on - strand, within Psyr_4137at 4927.741 kb on - strand, within Psyr_4137at 4928.033 kb on - strandat 4928.202 kb on + strand, within Psyr_4138at 4928.202 kb on + strand, within Psyr_4138at 4928.203 kb on - strand, within Psyr_4138at 4928.203 kb on - strand, within Psyr_4138at 4928.214 kb on + strand, within Psyr_4138at 4928.331 kb on + strand, within Psyr_4138at 4928.403 kb on + strand, within Psyr_4138at 4928.478 kb on + strand, within Psyr_4138at 4928.478 kb on + strand, within Psyr_4138at 4928.478 kb on + strand, within Psyr_4138at 4928.478 kb on + strand, within Psyr_4138at 4928.479 kb on - strand, within Psyr_4138at 4928.479 kb on - strand, within Psyr_4138at 4928.502 kb on + strand, within Psyr_4138at 4928.503 kb on - strand, within Psyr_4138at 4928.618 kb on + strandat 4928.642 kb on - strandat 4928.642 kb on - strandat 4928.797 kb on + strand, within Psyr_4139at 4928.798 kb on - strand, within Psyr_4139at 4928.901 kb on - strand, within Psyr_4139at 4928.955 kb on + strand, within Psyr_4139at 4928.955 kb on + strand, within Psyr_4139at 4928.955 kb on + strand, within Psyr_4139at 4928.956 kb on - strand, within Psyr_4139at 4928.956 kb on - strand, within Psyr_4139at 4928.985 kb on - strand, within Psyr_4139at 4928.985 kb on - strand, within Psyr_4139at 4929.001 kb on + strand, within Psyr_4139at 4929.002 kb on - strand, within Psyr_4139

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Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
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4,927,435 - Psyr_4136 0.38 -0.2
4,927,435 - Psyr_4136 0.38 -1.4
4,927,572 - -0.2
4,927,627 - -0.1
4,927,645 - +0.3
4,927,741 - Psyr_4137 0.14 -0.1
4,927,741 - Psyr_4137 0.14 +2.4
4,928,033 - -0.5
4,928,202 + Psyr_4138 0.31 -1.1
4,928,202 + Psyr_4138 0.31 -1.9
4,928,203 - Psyr_4138 0.31 -1.3
4,928,203 - Psyr_4138 0.31 +1.5
4,928,214 + Psyr_4138 0.33 +0.3
4,928,331 + Psyr_4138 0.51 +1.7
4,928,403 + Psyr_4138 0.62 +0.5
4,928,478 + Psyr_4138 0.73 -0.5
4,928,478 + Psyr_4138 0.73 +0.7
4,928,478 + Psyr_4138 0.73 -0.5
4,928,478 + Psyr_4138 0.73 -1.0
4,928,479 - Psyr_4138 0.74 -2.1
4,928,479 - Psyr_4138 0.74 -1.3
4,928,502 + Psyr_4138 0.77 -0.5
4,928,503 - Psyr_4138 0.77 -1.2
4,928,618 + -1.9
4,928,642 - -0.7
4,928,642 - -0.7
4,928,797 + Psyr_4139 0.29 -1.0
4,928,798 - Psyr_4139 0.29 +0.4
4,928,901 - Psyr_4139 0.51 -1.7
4,928,955 + Psyr_4139 0.63 +0.5
4,928,955 + Psyr_4139 0.63 +0.3
4,928,955 + Psyr_4139 0.63 -0.5
4,928,956 - Psyr_4139 0.63 +1.1
4,928,956 - Psyr_4139 0.63 +0.4
4,928,985 - Psyr_4139 0.69 -0.6
4,928,985 - Psyr_4139 0.69 -0.5
4,929,001 + Psyr_4139 0.73 +0.3
4,929,002 - Psyr_4139 0.73 +0.5

Or see this region's nucleotide sequence