Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1230

Experiment: Green bean; epiphytic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1228 and Psyr_1229 are separated by 53 nucleotidesPsyr_1229 and Psyr_1230 are separated by 63 nucleotidesPsyr_1230 and Psyr_1231 are separated by 9 nucleotides Psyr_1228: Psyr_1228 - tRNA-guanine transglycosylase, at 1,386,415 to 1,387,548 _1228 Psyr_1229: Psyr_1229 - protein translocase subunit yajC, at 1,387,602 to 1,387,937 _1229 Psyr_1230: Psyr_1230 - SecD/SecF/SecDF export membrane protein:SecD export membrane protein, at 1,388,001 to 1,389,869 _1230 Psyr_1231: Psyr_1231 - protein translocase subunit secF, at 1,389,879 to 1,390,790 _1231 Position (kb) 1388 1389 1390Strain fitness (log2 ratio) -1 0 1at 1387.579 kb on + strandat 1387.579 kb on + strandat 1387.579 kb on + strandat 1387.579 kb on + strandat 1387.583 kb on + strandat 1387.583 kb on + strandat 1387.583 kb on + strandat 1387.583 kb on + strandat 1387.587 kb on + strandat 1387.587 kb on + strandat 1387.710 kb on + strand, within Psyr_1229at 1387.710 kb on + strand, within Psyr_1229at 1387.808 kb on + strand, within Psyr_1229at 1389.867 kb on + strandat 1390.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
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1,387,579 + -0.6
1,387,579 + -0.6
1,387,579 + -0.1
1,387,579 + +1.0
1,387,583 + -0.2
1,387,583 + -0.6
1,387,583 + +0.7
1,387,583 + +0.8
1,387,587 + -1.3
1,387,587 + +0.2
1,387,710 + Psyr_1229 0.32 -0.2
1,387,710 + Psyr_1229 0.32 +0.0
1,387,808 + Psyr_1229 0.61 -1.0
1,389,867 + -0.4
1,390,804 - +0.4

Or see this region's nucleotide sequence