Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0868

Experiment: Green bean; epiphytic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0867 and Psyr_0868 are separated by 257 nucleotidesPsyr_0868 and Psyr_0869 are separated by 8 nucleotidesPsyr_0869 and Psyr_0870 are separated by 81 nucleotides Psyr_0867: Psyr_0867 - conserved hypothetical protein, at 986,935 to 988,947 _0867 Psyr_0868: Psyr_0868 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 989,205 to 990,845 _0868 Psyr_0869: Psyr_0869 - GCN5-related N-acetyltransferase, at 990,854 to 991,291 _0869 Psyr_0870: Psyr_0870 - GGDEF domain protein, at 991,373 to 992,566 _0870 Position (kb) 989 990 991Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 988.284 kb on - strand, within Psyr_0867at 988.286 kb on + strand, within Psyr_0867at 988.286 kb on + strand, within Psyr_0867at 988.286 kb on + strand, within Psyr_0867at 988.287 kb on - strand, within Psyr_0867at 988.287 kb on - strand, within Psyr_0867at 988.287 kb on - strand, within Psyr_0867at 988.287 kb on - strand, within Psyr_0867at 988.305 kb on - strand, within Psyr_0867at 988.418 kb on + strand, within Psyr_0867at 988.474 kb on - strand, within Psyr_0867at 988.601 kb on + strand, within Psyr_0867at 988.740 kb on + strand, within Psyr_0867at 988.766 kb on - strandat 988.766 kb on - strandat 988.770 kb on - strandat 988.770 kb on - strandat 988.770 kb on - strandat 988.770 kb on - strandat 988.801 kb on - strandat 988.824 kb on + strandat 988.955 kb on + strandat 988.956 kb on - strandat 989.014 kb on + strandat 989.015 kb on - strandat 989.081 kb on + strandat 989.081 kb on + strandat 989.082 kb on - strandat 989.129 kb on + strandat 989.129 kb on + strandat 989.130 kb on - strandat 989.130 kb on - strandat 989.130 kb on - strandat 989.130 kb on - strandat 989.130 kb on - strandat 989.130 kb on - strandat 989.130 kb on - strandat 989.130 kb on - strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.136 kb on - strandat 989.136 kb on - strandat 989.136 kb on - strandat 989.136 kb on - strandat 989.136 kb on - strandat 989.136 kb on - strandat 989.136 kb on - strandat 989.159 kb on + strandat 989.205 kb on - strandat 989.218 kb on - strandat 989.218 kb on - strandat 989.290 kb on + strandat 989.290 kb on + strandat 989.290 kb on + strandat 989.291 kb on - strandat 989.293 kb on + strandat 989.294 kb on - strandat 989.294 kb on - strandat 989.343 kb on - strandat 989.469 kb on - strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.717 kb on - strand, within Psyr_0868at 989.717 kb on - strand, within Psyr_0868at 989.729 kb on + strand, within Psyr_0868at 989.729 kb on + strand, within Psyr_0868at 989.796 kb on + strand, within Psyr_0868at 989.796 kb on + strand, within Psyr_0868at 989.796 kb on + strand, within Psyr_0868at 989.796 kb on + strand, within Psyr_0868at 989.797 kb on - strand, within Psyr_0868at 989.797 kb on - strand, within Psyr_0868at 989.797 kb on - strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.849 kb on - strand, within Psyr_0868at 989.849 kb on - strand, within Psyr_0868at 989.849 kb on - strand, within Psyr_0868at 989.849 kb on - strand, within Psyr_0868at 989.849 kb on - strand, within Psyr_0868at 989.849 kb on - strand, within Psyr_0868at 990.017 kb on - strand, within Psyr_0868at 990.827 kb on - strandat 990.848 kb on + strandat 990.848 kb on + strandat 990.848 kb on + strandat 990.848 kb on + strandat 990.848 kb on + strandat 990.849 kb on - strandat 990.849 kb on - strandat 990.849 kb on - strandat 990.940 kb on - strand, within Psyr_0869at 991.111 kb on - strand, within Psyr_0869at 991.111 kb on - strand, within Psyr_0869at 991.393 kb on + strandat 991.393 kb on + strandat 991.393 kb on + strandat 991.393 kb on + strandat 991.394 kb on - strandat 991.394 kb on - strandat 991.394 kb on - strandat 991.394 kb on - strandat 991.417 kb on - strandat 991.699 kb on + strand, within Psyr_0870at 991.700 kb on - strand, within Psyr_0870at 991.719 kb on + strand, within Psyr_0870at 991.719 kb on + strand, within Psyr_0870at 991.719 kb on + strand, within Psyr_0870at 991.719 kb on + strand, within Psyr_0870at 991.719 kb on + strand, within Psyr_0870at 991.719 kb on + strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.720 kb on - strand, within Psyr_0870at 991.731 kb on + strand, within Psyr_0870at 991.732 kb on - strand, within Psyr_0870

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Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
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988,284 - Psyr_0867 0.67 -1.8
988,286 + Psyr_0867 0.67 +0.6
988,286 + Psyr_0867 0.67 -1.0
988,286 + Psyr_0867 0.67 +0.3
988,287 - Psyr_0867 0.67 -0.0
988,287 - Psyr_0867 0.67 +1.0
988,287 - Psyr_0867 0.67 +0.9
988,287 - Psyr_0867 0.67 +0.3
988,305 - Psyr_0867 0.68 -0.6
988,418 + Psyr_0867 0.74 -1.3
988,474 - Psyr_0867 0.76 -0.2
988,601 + Psyr_0867 0.83 +0.4
988,740 + Psyr_0867 0.90 -1.4
988,766 - -1.2
988,766 - -0.7
988,770 - -0.6
988,770 - -0.4
988,770 - +1.3
988,770 - -0.3
988,801 - -1.3
988,824 + -0.1
988,955 + +3.6
988,956 - +0.3
989,014 + -0.3
989,015 - +0.1
989,081 + -2.2
989,081 + +1.0
989,082 - +1.0
989,129 + -0.1
989,129 + +0.4
989,130 - -0.1
989,130 - +1.5
989,130 - -0.0
989,130 - +0.3
989,130 - +0.1
989,130 - -1.6
989,130 - -0.2
989,130 - +1.9
989,135 + -0.7
989,135 + +0.2
989,135 + -0.5
989,136 - -0.7
989,136 - -1.0
989,136 - +1.2
989,136 - +0.1
989,136 - +0.3
989,136 - -0.3
989,136 - -0.3
989,159 + +1.0
989,205 - +1.2
989,218 - -1.0
989,218 - +1.0
989,290 + +1.0
989,290 + +1.0
989,290 + -0.6
989,291 - -1.0
989,293 + -1.5
989,294 - +1.4
989,294 - +1.3
989,343 - -0.0
989,469 - Psyr_0868 0.16 -1.6
989,674 + Psyr_0868 0.29 -0.9
989,674 + Psyr_0868 0.29 -0.4
989,674 + Psyr_0868 0.29 +0.5
989,674 + Psyr_0868 0.29 -1.0
989,675 - Psyr_0868 0.29 +0.5
989,675 - Psyr_0868 0.29 +0.1
989,675 - Psyr_0868 0.29 +1.1
989,675 - Psyr_0868 0.29 +0.8
989,675 - Psyr_0868 0.29 -3.0
989,675 - Psyr_0868 0.29 +0.2
989,717 - Psyr_0868 0.31 +0.1
989,717 - Psyr_0868 0.31 -0.2
989,729 + Psyr_0868 0.32 -0.7
989,729 + Psyr_0868 0.32 -0.4
989,796 + Psyr_0868 0.36 +0.1
989,796 + Psyr_0868 0.36 -0.1
989,796 + Psyr_0868 0.36 -2.6
989,796 + Psyr_0868 0.36 -0.2
989,797 - Psyr_0868 0.36 -1.0
989,797 - Psyr_0868 0.36 +1.0
989,797 - Psyr_0868 0.36 +0.4
989,848 + Psyr_0868 0.39 +1.0
989,848 + Psyr_0868 0.39 +0.9
989,848 + Psyr_0868 0.39 -0.8
989,848 + Psyr_0868 0.39 +1.0
989,849 - Psyr_0868 0.39 -0.6
989,849 - Psyr_0868 0.39 +0.6
989,849 - Psyr_0868 0.39 -0.9
989,849 - Psyr_0868 0.39 +1.0
989,849 - Psyr_0868 0.39 -0.6
989,849 - Psyr_0868 0.39 -1.5
990,017 - Psyr_0868 0.49 +0.2
990,827 - -0.3
990,848 + -0.0
990,848 + +0.3
990,848 + -0.0
990,848 + +0.7
990,848 + +1.4
990,849 - +0.4
990,849 - -0.7
990,849 - +0.7
990,940 - Psyr_0869 0.20 +0.1
991,111 - Psyr_0869 0.59 -1.6
991,111 - Psyr_0869 0.59 -0.6
991,393 + +0.5
991,393 + -0.6
991,393 + -0.0
991,393 + -0.8
991,394 - +1.7
991,394 - +0.3
991,394 - +2.6
991,394 - -2.2
991,417 - +1.0
991,699 + Psyr_0870 0.27 -0.4
991,700 - Psyr_0870 0.27 +1.0
991,719 + Psyr_0870 0.29 -0.6
991,719 + Psyr_0870 0.29 -1.3
991,719 + Psyr_0870 0.29 +0.2
991,719 + Psyr_0870 0.29 -0.4
991,719 + Psyr_0870 0.29 -0.0
991,719 + Psyr_0870 0.29 +0.6
991,720 - Psyr_0870 0.29 +0.6
991,720 - Psyr_0870 0.29 -1.0
991,720 - Psyr_0870 0.29 -1.9
991,720 - Psyr_0870 0.29 +0.5
991,720 - Psyr_0870 0.29 +0.2
991,720 - Psyr_0870 0.29 -1.2
991,720 - Psyr_0870 0.29 -1.6
991,731 + Psyr_0870 0.30 -0.4
991,732 - Psyr_0870 0.30 -1.0

Or see this region's nucleotide sequence