Experiment: Green bean; epiphytic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0751 and Psyr_0752 are separated by 825 nucleotides Psyr_0752 and Psyr_0753 are separated by 215 nucleotides
Psyr_0751: Psyr_0751 - ISPs1, transposase OrfB, at 854,901 to 855,206
_0751
Psyr_0752: Psyr_0752 - conserved hypothetical protein, at 856,032 to 856,478
_0752
Psyr_0753: Psyr_0753 - Protein of unknown function DUF187, at 856,694 to 857,875
_0753
Position (kb) 856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 855.110 kb on + strand, within Psyr_0751 at 855.111 kb on - strand, within Psyr_0751 at 855.134 kb on + strand, within Psyr_0751 at 855.135 kb on - strand, within Psyr_0751 at 855.135 kb on - strand, within Psyr_0751 at 855.135 kb on - strand, within Psyr_0751 at 855.140 kb on + strand, within Psyr_0751 at 855.216 kb on + strand at 855.216 kb on + strand at 855.224 kb on - strand at 855.252 kb on + strand at 855.253 kb on - strand at 855.256 kb on - strand at 855.259 kb on - strand at 855.259 kb on - strand at 855.304 kb on - strand at 855.385 kb on - strand at 855.398 kb on - strand at 855.501 kb on + strand at 855.502 kb on - strand at 855.516 kb on + strand at 855.526 kb on + strand at 855.527 kb on - strand at 855.553 kb on + strand at 855.569 kb on + strand at 855.582 kb on - strand at 855.582 kb on - strand at 855.608 kb on + strand at 855.608 kb on + strand at 855.609 kb on - strand at 855.614 kb on + strand at 855.614 kb on + strand at 855.615 kb on - strand at 855.615 kb on - strand at 855.615 kb on - strand at 855.661 kb on + strand at 855.739 kb on + strand at 855.739 kb on + strand at 855.739 kb on + strand at 855.739 kb on + strand at 855.739 kb on + strand at 855.739 kb on + strand at 855.739 kb on + strand at 855.739 kb on + strand at 855.740 kb on - strand at 855.758 kb on + strand at 855.758 kb on + strand at 855.758 kb on + strand at 855.758 kb on + strand at 855.759 kb on - strand at 855.759 kb on - strand at 855.759 kb on - strand at 855.769 kb on + strand at 855.777 kb on - strand at 855.777 kb on - strand at 855.777 kb on - strand at 855.807 kb on - strand at 855.807 kb on - strand at 855.811 kb on + strand at 855.812 kb on - strand at 855.812 kb on - strand at 855.876 kb on + strand at 855.891 kb on - strand at 855.897 kb on + strand at 855.897 kb on + strand at 855.897 kb on + strand at 855.897 kb on + strand at 855.897 kb on + strand at 855.898 kb on - strand at 855.898 kb on - strand at 855.898 kb on - strand at 855.928 kb on + strand at 855.928 kb on + strand at 855.929 kb on - strand at 855.933 kb on - strand at 855.967 kb on - strand at 855.997 kb on + strand at 856.024 kb on + strand at 856.091 kb on + strand, within Psyr_0752 at 856.141 kb on - strand, within Psyr_0752 at 856.173 kb on + strand, within Psyr_0752 at 856.194 kb on + strand, within Psyr_0752 at 856.195 kb on - strand, within Psyr_0752 at 856.195 kb on - strand, within Psyr_0752 at 856.195 kb on - strand, within Psyr_0752 at 856.234 kb on - strand, within Psyr_0752 at 856.252 kb on + strand, within Psyr_0752 at 856.252 kb on + strand, within Psyr_0752 at 856.252 kb on + strand, within Psyr_0752 at 856.253 kb on - strand, within Psyr_0752 at 856.253 kb on - strand, within Psyr_0752 at 856.253 kb on - strand, within Psyr_0752 at 856.295 kb on + strand, within Psyr_0752 at 856.360 kb on + strand, within Psyr_0752 at 856.360 kb on + strand, within Psyr_0752 at 856.360 kb on + strand, within Psyr_0752 at 856.361 kb on - strand, within Psyr_0752 at 856.419 kb on + strand, within Psyr_0752 at 856.419 kb on + strand, within Psyr_0752 at 856.419 kb on + strand, within Psyr_0752 at 856.419 kb on + strand, within Psyr_0752 at 856.419 kb on + strand, within Psyr_0752 at 856.419 kb on + strand, within Psyr_0752 at 856.419 kb on + strand, within Psyr_0752 at 856.419 kb on + strand, within Psyr_0752 at 856.419 kb on + strand, within Psyr_0752 at 856.419 kb on + strand, within Psyr_0752 at 856.420 kb on - strand, within Psyr_0752 at 856.420 kb on - strand, within Psyr_0752 at 856.420 kb on - strand, within Psyr_0752 at 856.420 kb on - strand, within Psyr_0752 at 856.420 kb on - strand, within Psyr_0752 at 856.420 kb on - strand, within Psyr_0752 at 856.457 kb on + strand at 856.476 kb on + strand at 856.477 kb on - strand at 856.477 kb on - strand at 856.506 kb on + strand at 856.506 kb on + strand at 856.507 kb on - strand at 856.507 kb on - strand at 856.512 kb on + strand at 856.512 kb on + strand at 856.512 kb on + strand at 856.512 kb on + strand at 856.513 kb on - strand at 856.615 kb on + strand at 856.616 kb on - strand at 856.695 kb on + strand at 856.722 kb on + strand at 856.760 kb on + strand at 856.760 kb on + strand at 856.760 kb on + strand at 856.760 kb on + strand at 856.760 kb on + strand at 856.760 kb on + strand at 856.761 kb on - strand at 856.761 kb on - strand at 856.761 kb on - strand at 856.761 kb on - strand at 856.762 kb on + strand at 856.777 kb on + strand at 856.778 kb on - strand at 856.888 kb on + strand, within Psyr_0753 at 856.888 kb on + strand, within Psyr_0753 at 856.889 kb on - strand, within Psyr_0753 at 856.889 kb on - strand, within Psyr_0753 at 856.890 kb on + strand, within Psyr_0753 at 856.890 kb on + strand, within Psyr_0753 at 856.891 kb on - strand, within Psyr_0753 at 856.900 kb on + strand, within Psyr_0753 at 856.906 kb on + strand, within Psyr_0753 at 856.906 kb on + strand, within Psyr_0753 at 856.906 kb on + strand, within Psyr_0753 at 856.906 kb on + strand, within Psyr_0753 at 856.906 kb on + strand, within Psyr_0753 at 856.906 kb on + strand, within Psyr_0753 at 856.906 kb on + strand, within Psyr_0753 at 856.907 kb on - strand, within Psyr_0753 at 856.907 kb on - strand, within Psyr_0753 at 856.907 kb on - strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.908 kb on + strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.909 kb on - strand, within Psyr_0753 at 856.910 kb on + strand, within Psyr_0753 at 856.910 kb on + strand, within Psyr_0753 at 856.910 kb on + strand, within Psyr_0753 at 856.911 kb on - strand, within Psyr_0753 at 856.911 kb on - strand, within Psyr_0753 at 856.965 kb on + strand, within Psyr_0753 at 856.995 kb on + strand, within Psyr_0753 at 856.995 kb on + strand, within Psyr_0753 at 857.011 kb on + strand, within Psyr_0753 at 857.011 kb on + strand, within Psyr_0753 at 857.013 kb on + strand, within Psyr_0753 at 857.013 kb on + strand, within Psyr_0753 at 857.013 kb on + strand, within Psyr_0753 at 857.013 kb on + strand, within Psyr_0753 at 857.014 kb on - strand, within Psyr_0753 at 857.014 kb on - strand, within Psyr_0753 at 857.014 kb on - strand, within Psyr_0753 at 857.014 kb on - strand, within Psyr_0753 at 857.068 kb on - strand, within Psyr_0753 at 857.068 kb on - strand, within Psyr_0753 at 857.071 kb on + strand, within Psyr_0753 at 857.071 kb on + strand, within Psyr_0753 at 857.071 kb on + strand, within Psyr_0753 at 857.072 kb on - strand, within Psyr_0753 at 857.072 kb on - strand, within Psyr_0753 at 857.072 kb on - strand, within Psyr_0753 at 857.072 kb on - strand, within Psyr_0753 at 857.072 kb on - strand, within Psyr_0753 at 857.072 kb on - strand, within Psyr_0753 at 857.116 kb on + strand, within Psyr_0753 at 857.205 kb on + strand, within Psyr_0753 at 857.206 kb on - strand, within Psyr_0753 at 857.248 kb on + strand, within Psyr_0753 at 857.248 kb on + strand, within Psyr_0753 at 857.253 kb on + strand, within Psyr_0753 at 857.253 kb on + strand, within Psyr_0753 at 857.253 kb on + strand, within Psyr_0753 at 857.253 kb on + strand, within Psyr_0753 at 857.253 kb on + strand, within Psyr_0753 at 857.253 kb on + strand, within Psyr_0753 at 857.254 kb on - strand, within Psyr_0753 at 857.254 kb on - strand, within Psyr_0753 at 857.254 kb on - strand, within Psyr_0753 at 857.254 kb on - strand, within Psyr_0753 at 857.254 kb on - strand, within Psyr_0753 at 857.254 kb on - strand, within Psyr_0753 at 857.254 kb on - strand, within Psyr_0753 at 857.254 kb on - strand, within Psyr_0753 at 857.254 kb on - strand, within Psyr_0753 at 857.262 kb on + strand, within Psyr_0753 at 857.263 kb on - strand, within Psyr_0753 at 857.304 kb on + strand, within Psyr_0753 at 857.310 kb on + strand, within Psyr_0753 at 857.340 kb on + strand, within Psyr_0753 at 857.366 kb on - strand, within Psyr_0753 at 857.368 kb on + strand, within Psyr_0753 at 857.368 kb on + strand, within Psyr_0753 at 857.452 kb on + strand, within Psyr_0753
Per-strain Table
Position Strand Gene LocusTag Fraction Green bean; epiphytic remove 855,110 + Psyr_0751 0.68 +1.4 855,111 - Psyr_0751 0.69 -0.3 855,134 + Psyr_0751 0.76 -1.2 855,135 - Psyr_0751 0.76 +0.0 855,135 - Psyr_0751 0.76 -2.0 855,135 - Psyr_0751 0.76 -1.7 855,140 + Psyr_0751 0.78 +0.0 855,216 + +0.6 855,216 + +0.0 855,224 - -1.1 855,252 + +1.0 855,253 - +1.5 855,256 - -1.3 855,259 - +0.2 855,259 - +0.8 855,304 - -0.2 855,385 - +0.0 855,398 - -0.6 855,501 + -0.6 855,502 - -1.6 855,516 + +1.0 855,526 + +0.8 855,527 - +1.0 855,553 + -0.2 855,569 + +0.1 855,582 - +0.1 855,582 - -0.6 855,608 + -0.8 855,608 + -0.7 855,609 - -0.5 855,614 + -0.6 855,614 + +1.7 855,615 - -0.7 855,615 - -1.3 855,615 - +0.9 855,661 + -0.1 855,739 + -0.7 855,739 + +0.7 855,739 + +0.4 855,739 + -1.0 855,739 + -0.6 855,739 + -1.6 855,739 + +0.4 855,739 + -2.0 855,740 - -0.1 855,758 + -0.6 855,758 + +0.4 855,758 + -1.9 855,758 + -1.6 855,759 - +0.5 855,759 - +0.8 855,759 - +0.6 855,769 + -0.8 855,777 - -0.2 855,777 - -0.7 855,777 - -0.5 855,807 - +0.0 855,807 - +0.0 855,811 + +0.4 855,812 - +0.6 855,812 - -0.9 855,876 + +1.1 855,891 - -0.7 855,897 + -2.5 855,897 + -0.4 855,897 + +0.3 855,897 + +0.4 855,897 + -1.0 855,898 - -0.6 855,898 - -0.2 855,898 - +1.0 855,928 + +0.1 855,928 + +0.3 855,929 - -0.3 855,933 - +0.2 855,967 - +1.8 855,997 + -0.7 856,024 + +1.0 856,091 + Psyr_0752 0.13 +0.4 856,141 - Psyr_0752 0.24 -0.6 856,173 + Psyr_0752 0.32 -0.1 856,194 + Psyr_0752 0.36 -0.3 856,195 - Psyr_0752 0.36 +1.3 856,195 - Psyr_0752 0.36 -0.6 856,195 - Psyr_0752 0.36 +0.5 856,234 - Psyr_0752 0.45 -0.3 856,252 + Psyr_0752 0.49 +0.1 856,252 + Psyr_0752 0.49 +0.0 856,252 + Psyr_0752 0.49 -1.8 856,253 - Psyr_0752 0.49 +1.0 856,253 - Psyr_0752 0.49 +1.4 856,253 - Psyr_0752 0.49 -0.4 856,295 + Psyr_0752 0.59 +1.1 856,360 + Psyr_0752 0.73 -0.3 856,360 + Psyr_0752 0.73 +0.3 856,360 + Psyr_0752 0.73 +0.0 856,361 - Psyr_0752 0.74 +0.4 856,419 + Psyr_0752 0.87 -0.1 856,419 + Psyr_0752 0.87 -0.4 856,419 + Psyr_0752 0.87 +0.5 856,419 + Psyr_0752 0.87 +0.3 856,419 + Psyr_0752 0.87 +0.0 856,419 + Psyr_0752 0.87 -0.5 856,419 + Psyr_0752 0.87 -0.6 856,419 + Psyr_0752 0.87 +0.9 856,419 + Psyr_0752 0.87 -2.3 856,419 + Psyr_0752 0.87 -1.9 856,420 - Psyr_0752 0.87 -0.0 856,420 - Psyr_0752 0.87 -0.8 856,420 - Psyr_0752 0.87 +0.6 856,420 - Psyr_0752 0.87 -1.3 856,420 - Psyr_0752 0.87 -0.1 856,420 - Psyr_0752 0.87 -1.3 856,457 + +0.0 856,476 + +0.0 856,477 - -1.0 856,477 - +0.5 856,506 + +0.5 856,506 + -0.7 856,507 - +0.2 856,507 - -0.8 856,512 + -0.1 856,512 + -0.1 856,512 + -0.9 856,512 + -0.6 856,513 - +1.0 856,615 + -0.5 856,616 - -0.1 856,695 + -0.6 856,722 + +1.6 856,760 + +0.0 856,760 + -0.1 856,760 + +1.0 856,760 + -1.9 856,760 + -2.8 856,760 + +1.5 856,761 - -1.2 856,761 - -0.7 856,761 - +0.1 856,761 - -0.5 856,762 + +2.2 856,777 + +0.3 856,778 - -1.0 856,888 + Psyr_0753 0.16 +0.1 856,888 + Psyr_0753 0.16 +0.1 856,889 - Psyr_0753 0.16 -0.1 856,889 - Psyr_0753 0.16 +2.7 856,890 + Psyr_0753 0.17 -1.4 856,890 + Psyr_0753 0.17 -0.1 856,891 - Psyr_0753 0.17 -0.4 856,900 + Psyr_0753 0.17 -0.3 856,906 + Psyr_0753 0.18 -1.7 856,906 + Psyr_0753 0.18 -0.8 856,906 + Psyr_0753 0.18 +0.6 856,906 + Psyr_0753 0.18 +0.7 856,906 + Psyr_0753 0.18 -0.1 856,906 + Psyr_0753 0.18 +0.3 856,906 + Psyr_0753 0.18 -0.2 856,907 - Psyr_0753 0.18 +1.0 856,907 - Psyr_0753 0.18 -0.2 856,907 - Psyr_0753 0.18 +0.6 856,908 + Psyr_0753 0.18 -1.5 856,908 + Psyr_0753 0.18 -0.1 856,908 + Psyr_0753 0.18 -0.4 856,908 + Psyr_0753 0.18 -0.6 856,908 + Psyr_0753 0.18 +0.3 856,908 + Psyr_0753 0.18 +1.2 856,908 + Psyr_0753 0.18 -1.0 856,908 + Psyr_0753 0.18 +0.6 856,908 + Psyr_0753 0.18 -0.8 856,908 + Psyr_0753 0.18 +0.3 856,908 + Psyr_0753 0.18 -1.2 856,908 + Psyr_0753 0.18 +3.0 856,908 + Psyr_0753 0.18 -0.4 856,909 - Psyr_0753 0.18 +1.0 856,909 - Psyr_0753 0.18 -1.0 856,909 - Psyr_0753 0.18 -1.5 856,909 - Psyr_0753 0.18 +0.1 856,909 - Psyr_0753 0.18 -0.6 856,909 - Psyr_0753 0.18 -0.8 856,909 - Psyr_0753 0.18 -2.1 856,909 - Psyr_0753 0.18 +1.0 856,909 - Psyr_0753 0.18 +0.0 856,909 - Psyr_0753 0.18 -0.2 856,909 - Psyr_0753 0.18 +0.1 856,909 - Psyr_0753 0.18 -1.3 856,909 - Psyr_0753 0.18 +1.5 856,909 - Psyr_0753 0.18 +1.0 856,910 + Psyr_0753 0.18 +0.5 856,910 + Psyr_0753 0.18 -0.4 856,910 + Psyr_0753 0.18 -0.4 856,911 - Psyr_0753 0.18 -1.3 856,911 - Psyr_0753 0.18 -1.0 856,965 + Psyr_0753 0.23 +2.5 856,995 + Psyr_0753 0.25 -0.8 856,995 + Psyr_0753 0.25 +1.2 857,011 + Psyr_0753 0.27 +0.0 857,011 + Psyr_0753 0.27 -0.2 857,013 + Psyr_0753 0.27 -0.4 857,013 + Psyr_0753 0.27 -0.3 857,013 + Psyr_0753 0.27 -0.5 857,013 + Psyr_0753 0.27 -0.5 857,014 - Psyr_0753 0.27 -0.2 857,014 - Psyr_0753 0.27 -1.1 857,014 - Psyr_0753 0.27 +0.5 857,014 - Psyr_0753 0.27 +0.0 857,068 - Psyr_0753 0.32 +2.0 857,068 - Psyr_0753 0.32 -0.6 857,071 + Psyr_0753 0.32 +0.1 857,071 + Psyr_0753 0.32 -0.3 857,071 + Psyr_0753 0.32 +0.6 857,072 - Psyr_0753 0.32 -0.3 857,072 - Psyr_0753 0.32 -2.2 857,072 - Psyr_0753 0.32 +0.0 857,072 - Psyr_0753 0.32 -0.7 857,072 - Psyr_0753 0.32 -0.5 857,072 - Psyr_0753 0.32 +0.3 857,116 + Psyr_0753 0.36 -0.6 857,205 + Psyr_0753 0.43 +0.2 857,206 - Psyr_0753 0.43 -0.3 857,248 + Psyr_0753 0.47 -0.3 857,248 + Psyr_0753 0.47 -0.1 857,253 + Psyr_0753 0.47 +1.3 857,253 + Psyr_0753 0.47 +0.0 857,253 + Psyr_0753 0.47 +2.1 857,253 + Psyr_0753 0.47 -0.6 857,253 + Psyr_0753 0.47 -0.1 857,253 + Psyr_0753 0.47 +0.5 857,254 - Psyr_0753 0.47 +0.7 857,254 - Psyr_0753 0.47 +0.2 857,254 - Psyr_0753 0.47 -0.2 857,254 - Psyr_0753 0.47 -0.4 857,254 - Psyr_0753 0.47 -0.0 857,254 - Psyr_0753 0.47 -0.8 857,254 - Psyr_0753 0.47 +1.0 857,254 - Psyr_0753 0.47 +0.2 857,254 - Psyr_0753 0.47 +0.3 857,262 + Psyr_0753 0.48 -0.2 857,263 - Psyr_0753 0.48 -0.8 857,304 + Psyr_0753 0.52 -0.2 857,310 + Psyr_0753 0.52 +1.7 857,340 + Psyr_0753 0.55 -2.2 857,366 - Psyr_0753 0.57 -1.0 857,368 + Psyr_0753 0.57 -0.5 857,368 + Psyr_0753 0.57 +0.1 857,452 + Psyr_0753 0.64 -2.8
Or see this region's nucleotide sequence