Experiment: Green bean; epiphytic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0362 and Psyr_0363 are separated by 103 nucleotides Psyr_0363 and Psyr_0364 are separated by 105 nucleotides Psyr_0364 and Psyr_0365 are separated by 49 nucleotides Psyr_0365 and Psyr_0366 overlap by 4 nucleotides
Psyr_0362: Psyr_0362 - Sigma-70 region 2, at 387,282 to 387,848
_0362
Psyr_0363: Psyr_0363 - conserved hypothetical protein, at 387,952 to 388,485
_0363
Psyr_0364: Psyr_0364 - sodium/proton antiporter, NhaA family, at 388,591 to 389,766
_0364
Psyr_0365: Psyr_0365 - protein of unknown function DUF886, at 389,816 to 390,412
_0365
Psyr_0366: Psyr_0366 - transcriptional regulator, GntR family, at 390,409 to 391,230
_0366
Position (kb) 388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 387.763 kb on + strand, within Psyr_0362 at 387.820 kb on + strand at 387.873 kb on + strand at 387.874 kb on - strand at 387.913 kb on + strand at 387.918 kb on + strand at 387.919 kb on - strand at 387.919 kb on - strand at 387.919 kb on - strand at 387.974 kb on + strand at 387.975 kb on - strand at 387.975 kb on - strand at 387.986 kb on + strand at 387.986 kb on + strand at 387.986 kb on + strand at 387.987 kb on - strand at 387.987 kb on - strand at 388.073 kb on + strand, within Psyr_0363 at 388.073 kb on + strand, within Psyr_0363 at 388.073 kb on + strand, within Psyr_0363 at 388.073 kb on + strand, within Psyr_0363 at 388.074 kb on - strand, within Psyr_0363 at 388.074 kb on - strand, within Psyr_0363 at 388.074 kb on - strand, within Psyr_0363 at 388.074 kb on - strand, within Psyr_0363 at 388.074 kb on - strand, within Psyr_0363 at 388.074 kb on - strand, within Psyr_0363 at 388.224 kb on - strand, within Psyr_0363 at 388.224 kb on - strand, within Psyr_0363 at 388.226 kb on + strand, within Psyr_0363 at 388.226 kb on + strand, within Psyr_0363 at 388.226 kb on + strand, within Psyr_0363 at 388.226 kb on + strand, within Psyr_0363 at 388.226 kb on + strand, within Psyr_0363 at 388.226 kb on + strand, within Psyr_0363 at 388.227 kb on - strand, within Psyr_0363 at 388.227 kb on - strand, within Psyr_0363 at 388.328 kb on + strand, within Psyr_0363 at 388.328 kb on + strand, within Psyr_0363 at 388.328 kb on + strand, within Psyr_0363 at 388.328 kb on + strand, within Psyr_0363 at 388.329 kb on - strand, within Psyr_0363 at 388.542 kb on + strand at 388.542 kb on + strand at 388.545 kb on + strand at 388.766 kb on + strand, within Psyr_0364 at 388.767 kb on - strand, within Psyr_0364 at 388.915 kb on - strand, within Psyr_0364 at 388.982 kb on + strand, within Psyr_0364 at 389.135 kb on + strand, within Psyr_0364 at 389.235 kb on - strand, within Psyr_0364 at 389.423 kb on + strand, within Psyr_0364 at 389.423 kb on + strand, within Psyr_0364 at 389.423 kb on + strand, within Psyr_0364 at 389.423 kb on + strand, within Psyr_0364 at 389.424 kb on - strand, within Psyr_0364 at 389.424 kb on - strand, within Psyr_0364 at 389.424 kb on - strand, within Psyr_0364 at 389.424 kb on - strand, within Psyr_0364 at 389.794 kb on + strand at 389.796 kb on + strand at 389.796 kb on + strand at 389.797 kb on - strand at 389.797 kb on - strand at 389.999 kb on - strand, within Psyr_0365 at 390.039 kb on - strand, within Psyr_0365 at 390.075 kb on + strand, within Psyr_0365 at 390.075 kb on + strand, within Psyr_0365 at 390.075 kb on + strand, within Psyr_0365 at 390.075 kb on + strand, within Psyr_0365 at 390.076 kb on - strand, within Psyr_0365 at 390.076 kb on - strand, within Psyr_0365 at 390.417 kb on + strand at 390.495 kb on + strand, within Psyr_0366 at 390.495 kb on + strand, within Psyr_0366 at 390.620 kb on + strand, within Psyr_0366 at 390.620 kb on + strand, within Psyr_0366 at 390.626 kb on + strand, within Psyr_0366 at 390.626 kb on + strand, within Psyr_0366 at 390.660 kb on - strand, within Psyr_0366
Per-strain Table
Position Strand Gene LocusTag Fraction Green bean; epiphytic remove 387,763 + Psyr_0362 0.85 +0.1 387,820 + +1.2 387,873 + -0.1 387,874 - -0.2 387,913 + +0.4 387,918 + -1.1 387,919 - +0.3 387,919 - +0.2 387,919 - -2.3 387,974 + -0.6 387,975 - -1.8 387,975 - +0.4 387,986 + +0.5 387,986 + -0.9 387,986 + +0.3 387,987 - +0.1 387,987 - -1.1 388,073 + Psyr_0363 0.23 -1.8 388,073 + Psyr_0363 0.23 +0.6 388,073 + Psyr_0363 0.23 +0.7 388,073 + Psyr_0363 0.23 +0.4 388,074 - Psyr_0363 0.23 -1.4 388,074 - Psyr_0363 0.23 +0.7 388,074 - Psyr_0363 0.23 +0.3 388,074 - Psyr_0363 0.23 -1.8 388,074 - Psyr_0363 0.23 +0.3 388,074 - Psyr_0363 0.23 +0.7 388,224 - Psyr_0363 0.51 -0.3 388,224 - Psyr_0363 0.51 +0.4 388,226 + Psyr_0363 0.51 -1.3 388,226 + Psyr_0363 0.51 +0.4 388,226 + Psyr_0363 0.51 +1.2 388,226 + Psyr_0363 0.51 +0.8 388,226 + Psyr_0363 0.51 +0.4 388,226 + Psyr_0363 0.51 +1.4 388,227 - Psyr_0363 0.51 -0.4 388,227 - Psyr_0363 0.51 +1.1 388,328 + Psyr_0363 0.70 +0.0 388,328 + Psyr_0363 0.70 -0.3 388,328 + Psyr_0363 0.70 +2.0 388,328 + Psyr_0363 0.70 +0.4 388,329 - Psyr_0363 0.71 +0.5 388,542 + +1.7 388,542 + -1.9 388,545 + +0.8 388,766 + Psyr_0364 0.15 -0.3 388,767 - Psyr_0364 0.15 -0.1 388,915 - Psyr_0364 0.28 -1.8 388,982 + Psyr_0364 0.33 +0.3 389,135 + Psyr_0364 0.46 +0.2 389,235 - Psyr_0364 0.55 -0.2 389,423 + Psyr_0364 0.71 +1.6 389,423 + Psyr_0364 0.71 +1.4 389,423 + Psyr_0364 0.71 +0.1 389,423 + Psyr_0364 0.71 -0.7 389,424 - Psyr_0364 0.71 -0.3 389,424 - Psyr_0364 0.71 -0.6 389,424 - Psyr_0364 0.71 -1.5 389,424 - Psyr_0364 0.71 -0.6 389,794 + -0.2 389,796 + -0.3 389,796 + -3.0 389,797 - +0.1 389,797 - +0.0 389,999 - Psyr_0365 0.31 +0.2 390,039 - Psyr_0365 0.37 +0.1 390,075 + Psyr_0365 0.43 +0.4 390,075 + Psyr_0365 0.43 +1.0 390,075 + Psyr_0365 0.43 +1.0 390,075 + Psyr_0365 0.43 +0.4 390,076 - Psyr_0365 0.44 -0.7 390,076 - Psyr_0365 0.44 +0.7 390,417 + +0.9 390,495 + Psyr_0366 0.10 +0.1 390,495 + Psyr_0366 0.10 +1.0 390,620 + Psyr_0366 0.26 +1.2 390,620 + Psyr_0366 0.26 +0.0 390,626 + Psyr_0366 0.26 -2.3 390,626 + Psyr_0366 0.26 -1.6 390,660 - Psyr_0366 0.31 +0.1
Or see this region's nucleotide sequence