Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0287

Experiment: Green bean; epiphytic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0286 and Psyr_0287 are separated by 120 nucleotidesPsyr_0287 and Psyr_0288 are separated by 104 nucleotides Psyr_0286: Psyr_0286 - conserved hypothetical protein, at 304,127 to 304,777 _0286 Psyr_0287: Psyr_0287 - Sulphate transporter, at 304,898 to 306,430 _0287 Psyr_0288: Psyr_0288 - Carbonate dehydratase, at 306,535 to 307,275 _0288 Position (kb) 304 305 306 307Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 303.997 kb on + strandat 303.998 kb on - strandat 304.030 kb on - strandat 304.053 kb on + strandat 304.057 kb on + strandat 304.057 kb on + strandat 304.057 kb on + strandat 304.067 kb on - strandat 304.071 kb on + strandat 304.072 kb on - strandat 304.155 kb on + strandat 304.156 kb on - strandat 304.156 kb on - strandat 304.156 kb on - strandat 304.156 kb on - strandat 304.161 kb on + strandat 304.161 kb on + strandat 304.161 kb on + strandat 304.292 kb on + strand, within Psyr_0286at 304.293 kb on - strand, within Psyr_0286at 304.293 kb on - strand, within Psyr_0286at 304.293 kb on - strand, within Psyr_0286at 304.365 kb on + strand, within Psyr_0286at 304.366 kb on - strand, within Psyr_0286at 304.460 kb on + strand, within Psyr_0286at 304.460 kb on + strand, within Psyr_0286at 304.461 kb on - strand, within Psyr_0286at 304.461 kb on - strand, within Psyr_0286at 304.461 kb on - strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.500 kb on - strand, within Psyr_0286at 304.500 kb on - strand, within Psyr_0286at 304.500 kb on - strand, within Psyr_0286at 304.500 kb on - strand, within Psyr_0286at 304.500 kb on - strand, within Psyr_0286at 304.537 kb on + strand, within Psyr_0286at 304.840 kb on - strandat 304.882 kb on - strandat 304.882 kb on - strandat 304.933 kb on - strandat 304.933 kb on - strandat 305.049 kb on + strandat 305.049 kb on + strandat 305.049 kb on + strandat 305.049 kb on + strandat 305.050 kb on - strandat 305.050 kb on - strandat 305.255 kb on + strand, within Psyr_0287at 305.256 kb on - strand, within Psyr_0287at 305.256 kb on - strand, within Psyr_0287at 305.304 kb on + strand, within Psyr_0287at 305.304 kb on + strand, within Psyr_0287at 305.304 kb on + strand, within Psyr_0287at 305.304 kb on + strand, within Psyr_0287at 305.305 kb on - strand, within Psyr_0287at 305.305 kb on - strand, within Psyr_0287at 305.305 kb on - strand, within Psyr_0287at 305.305 kb on - strand, within Psyr_0287at 305.379 kb on + strand, within Psyr_0287at 305.379 kb on + strand, within Psyr_0287at 305.380 kb on - strand, within Psyr_0287at 305.569 kb on + strand, within Psyr_0287at 305.569 kb on + strand, within Psyr_0287at 305.570 kb on - strand, within Psyr_0287at 305.570 kb on - strand, within Psyr_0287at 305.570 kb on - strand, within Psyr_0287at 305.923 kb on + strand, within Psyr_0287at 305.923 kb on + strand, within Psyr_0287at 306.044 kb on + strand, within Psyr_0287at 306.044 kb on + strand, within Psyr_0287at 306.044 kb on + strand, within Psyr_0287at 306.044 kb on + strand, within Psyr_0287at 306.045 kb on - strand, within Psyr_0287at 306.078 kb on + strand, within Psyr_0287at 306.078 kb on + strand, within Psyr_0287at 306.166 kb on + strand, within Psyr_0287at 306.167 kb on - strand, within Psyr_0287at 306.167 kb on - strand, within Psyr_0287at 306.197 kb on + strand, within Psyr_0287at 306.421 kb on + strandat 306.421 kb on + strandat 306.421 kb on + strandat 306.422 kb on - strandat 306.422 kb on - strandat 306.422 kb on - strandat 306.422 kb on - strandat 306.422 kb on - strandat 306.422 kb on - strandat 306.422 kb on - strandat 306.422 kb on - strandat 306.424 kb on + strandat 306.424 kb on + strandat 306.502 kb on + strandat 306.503 kb on - strandat 306.623 kb on + strand, within Psyr_0288at 306.624 kb on - strand, within Psyr_0288at 306.624 kb on - strand, within Psyr_0288at 306.654 kb on - strand, within Psyr_0288at 306.844 kb on + strand, within Psyr_0288at 306.844 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.175 kb on - strand, within Psyr_0288at 307.175 kb on - strand, within Psyr_0288at 307.175 kb on - strand, within Psyr_0288at 307.191 kb on + strand, within Psyr_0288at 307.192 kb on - strand, within Psyr_0288at 307.204 kb on + strandat 307.204 kb on + strandat 307.205 kb on - strandat 307.205 kb on - strandat 307.205 kb on - strandat 307.425 kb on - strandat 307.425 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
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303,997 + +0.2
303,998 - -0.7
304,030 - +0.3
304,053 + +0.8
304,057 + +0.3
304,057 + +0.6
304,057 + +2.2
304,067 - -0.5
304,071 + +0.1
304,072 - -2.8
304,155 + +0.1
304,156 - -1.4
304,156 - -0.3
304,156 - -0.6
304,156 - -0.2
304,161 + -1.3
304,161 + +0.4
304,161 + -0.6
304,292 + Psyr_0286 0.25 -1.5
304,293 - Psyr_0286 0.25 -1.7
304,293 - Psyr_0286 0.25 -1.0
304,293 - Psyr_0286 0.25 +0.1
304,365 + Psyr_0286 0.37 +0.2
304,366 - Psyr_0286 0.37 +0.0
304,460 + Psyr_0286 0.51 -0.0
304,460 + Psyr_0286 0.51 -1.0
304,461 - Psyr_0286 0.51 +0.1
304,461 - Psyr_0286 0.51 +0.2
304,461 - Psyr_0286 0.51 +0.6
304,499 + Psyr_0286 0.57 +0.2
304,499 + Psyr_0286 0.57 -0.1
304,499 + Psyr_0286 0.57 +0.1
304,499 + Psyr_0286 0.57 -0.2
304,499 + Psyr_0286 0.57 -1.3
304,499 + Psyr_0286 0.57 +0.7
304,499 + Psyr_0286 0.57 -0.2
304,500 - Psyr_0286 0.57 -2.2
304,500 - Psyr_0286 0.57 -1.3
304,500 - Psyr_0286 0.57 -0.2
304,500 - Psyr_0286 0.57 -1.4
304,500 - Psyr_0286 0.57 -0.5
304,537 + Psyr_0286 0.63 -0.6
304,840 - +2.0
304,882 - -0.9
304,882 - +0.4
304,933 - -0.2
304,933 - +0.0
305,049 + -1.2
305,049 + -1.4
305,049 + -0.6
305,049 + +0.7
305,050 - +0.4
305,050 - -0.6
305,255 + Psyr_0287 0.23 +1.4
305,256 - Psyr_0287 0.23 +0.5
305,256 - Psyr_0287 0.23 -0.1
305,304 + Psyr_0287 0.26 +0.1
305,304 + Psyr_0287 0.26 -0.2
305,304 + Psyr_0287 0.26 -0.7
305,304 + Psyr_0287 0.26 +0.0
305,305 - Psyr_0287 0.27 +0.3
305,305 - Psyr_0287 0.27 -0.6
305,305 - Psyr_0287 0.27 -0.3
305,305 - Psyr_0287 0.27 -0.8
305,379 + Psyr_0287 0.31 +0.7
305,379 + Psyr_0287 0.31 +1.1
305,380 - Psyr_0287 0.31 -0.7
305,569 + Psyr_0287 0.44 +0.6
305,569 + Psyr_0287 0.44 +0.1
305,570 - Psyr_0287 0.44 -1.5
305,570 - Psyr_0287 0.44 +1.4
305,570 - Psyr_0287 0.44 -0.9
305,923 + Psyr_0287 0.67 -0.4
305,923 + Psyr_0287 0.67 -0.2
306,044 + Psyr_0287 0.75 +0.3
306,044 + Psyr_0287 0.75 +0.5
306,044 + Psyr_0287 0.75 +0.0
306,044 + Psyr_0287 0.75 -1.2
306,045 - Psyr_0287 0.75 +1.0
306,078 + Psyr_0287 0.77 -0.7
306,078 + Psyr_0287 0.77 -0.2
306,166 + Psyr_0287 0.83 -0.6
306,167 - Psyr_0287 0.83 -1.6
306,167 - Psyr_0287 0.83 +0.8
306,197 + Psyr_0287 0.85 +2.6
306,421 + +1.0
306,421 + +0.6
306,421 + -0.4
306,422 - +0.8
306,422 - -0.7
306,422 - -1.0
306,422 - +3.0
306,422 - -0.2
306,422 - +0.9
306,422 - -0.9
306,422 - +0.2
306,424 + -0.4
306,424 + -1.4
306,502 + -0.7
306,503 - +0.3
306,623 + Psyr_0288 0.12 -0.9
306,624 - Psyr_0288 0.12 +0.2
306,624 - Psyr_0288 0.12 +2.0
306,654 - Psyr_0288 0.16 -0.5
306,844 + Psyr_0288 0.42 +2.2
306,844 + Psyr_0288 0.42 +0.2
307,174 + Psyr_0288 0.86 -0.3
307,174 + Psyr_0288 0.86 -0.7
307,174 + Psyr_0288 0.86 -0.6
307,174 + Psyr_0288 0.86 +0.8
307,174 + Psyr_0288 0.86 +0.4
307,174 + Psyr_0288 0.86 +0.2
307,175 - Psyr_0288 0.86 +1.3
307,175 - Psyr_0288 0.86 +1.0
307,175 - Psyr_0288 0.86 -0.2
307,191 + Psyr_0288 0.89 -1.0
307,192 - Psyr_0288 0.89 -0.7
307,204 + -0.7
307,204 + -0.0
307,205 - +0.5
307,205 - -0.2
307,205 - +0.9
307,425 - +1.3
307,425 - -0.4

Or see this region's nucleotide sequence