Strain Fitness in Pseudomonas sp. RS175 around PFR28_05154

Experiment: acetate carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate carbon 10 mM
5,903,349	+		PFR28_05153	0.30	+0.9
5,903,350	-		PFR28_05153	0.30	-1.7
5,903,350	-		PFR28_05153	0.30	-0.4
5,903,350	-		PFR28_05153	0.30	-0.0
5,903,475	+		PFR28_05153	0.41	-0.3
5,903,475	+		PFR28_05153	0.41	-1.5
5,903,475	+		PFR28_05153	0.41	-1.4
5,903,475	+		PFR28_05153	0.41	-0.1
5,903,476	-		PFR28_05153	0.42	-1.0
5,903,476	-		PFR28_05153	0.42	+0.1
5,903,476	-		PFR28_05153	0.42	-0.5
5,903,532	+		PFR28_05153	0.46	-0.8
5,903,532	+		PFR28_05153	0.46	-0.7
5,903,532	+		PFR28_05153	0.46	-0.5
5,903,532	+		PFR28_05153	0.46	-0.1
5,903,532	+		PFR28_05153	0.46	-2.2
5,903,532	+		PFR28_05153	0.46	+2.5
5,903,532	+		PFR28_05153	0.46	-1.0
5,903,532	+		PFR28_05153	0.46	-0.1
5,903,532	+		PFR28_05153	0.46	-0.4
5,903,533	-		PFR28_05153	0.47	-0.8
5,903,533	-		PFR28_05153	0.47	+0.3
5,903,533	-		PFR28_05153	0.47	+0.3
5,903,533	-		PFR28_05153	0.47	-0.5
5,903,533	-		PFR28_05153	0.47	-0.3
5,903,533	-		PFR28_05153	0.47	-0.6
5,903,533	-		PFR28_05153	0.47	-0.6
5,903,598	+		PFR28_05153	0.52	-1.1
5,903,598	+		PFR28_05153	0.52	-2.0
5,903,599	-		PFR28_05153	0.52	-0.1
5,903,599	-		PFR28_05153	0.52	-0.9
5,903,671	+		PFR28_05153	0.59	-1.0
5,903,671	+		PFR28_05153	0.59	+0.5
5,903,671	+		PFR28_05153	0.59	-1.8
5,903,671	+		PFR28_05153	0.59	+0.2
5,903,671	+		PFR28_05153	0.59	-0.3
5,903,671	+		PFR28_05153	0.59	-0.3
5,903,671	+		PFR28_05153	0.59	-1.1
5,903,671	+		PFR28_05153	0.59	-0.3
5,903,672	-		PFR28_05153	0.59	-0.8
5,903,672	-		PFR28_05153	0.59	-1.3
5,903,672	-		PFR28_05153	0.59	-0.8
5,903,676	+		PFR28_05153	0.59	+0.9
5,903,676	+		PFR28_05153	0.59	+0.7
5,903,677	-		PFR28_05153	0.59	+0.6
5,903,811	+		PFR28_05153	0.71	+0.6
5,903,811	+		PFR28_05153	0.71	-0.1
5,903,811	+		PFR28_05153	0.71	-1.0
5,903,826	+		PFR28_05153	0.72	+0.3
5,903,826	+		PFR28_05153	0.72	-1.8
5,903,826	+		PFR28_05153	0.72	-0.8
5,903,826	+		PFR28_05153	0.72	-1.8
5,903,826	+		PFR28_05153	0.72	-0.4
5,903,826	+		PFR28_05153	0.72	-0.2
5,903,826	+		PFR28_05153	0.72	-1.3
5,903,827	-		PFR28_05153	0.72	-0.4
5,903,827	-		PFR28_05153	0.72	-1.9
5,903,827	-		PFR28_05153	0.72	-0.4
5,903,917	-		PFR28_05153	0.80	-0.7
5,903,925	+		PFR28_05153	0.81	-0.2
5,903,925	+		PFR28_05153	0.81	-0.8
5,903,926	-		PFR28_05153	0.81	-0.1
5,903,926	-		PFR28_05153	0.81	-0.4
5,903,931	+		PFR28_05153	0.82	-1.0
5,903,931	+		PFR28_05153	0.82	-0.3
5,903,931	+		PFR28_05153	0.82	-0.6
5,903,931	+		PFR28_05153	0.82	-0.6
5,903,932	-		PFR28_05153	0.82	-1.3
5,903,932	-		PFR28_05153	0.82	-0.0
5,903,932	-		PFR28_05153	0.82	-0.6
5,903,932	-		PFR28_05153	0.82	-2.9
5,903,932	-		PFR28_05153	0.82	-0.7
5,904,081	+				+0.0
5,904,081	+				+0.3
5,904,081	+				-2.0
5,904,081	+				-0.2
5,904,081	+				-0.8
5,904,082	-				-1.2
5,904,082	-				-2.5
5,904,082	-				-0.6
5,904,090	+				-0.1
5,904,091	-				-1.0
5,904,114	+				-0.4
5,904,114	+				+0.2
5,904,114	+				+1.9
5,904,114	+				-0.3
5,904,114	+				-0.5
5,904,114	+				+1.1
5,904,115	-				+0.5
5,904,115	-				-0.7
5,904,115	-				-0.5
5,904,115	-				-0.5
5,904,115	-				-1.0
5,904,115	-				-0.5
5,904,138	+				+1.3
5,904,138	+				-0.1
5,904,138	+				+1.1
5,904,138	+				-0.4
5,904,138	+				+0.5
5,904,138	+				-0.4
5,904,138	+				+0.4
5,904,138	+				+0.6
5,904,139	-				-0.7
5,904,139	-				-0.7
5,904,139	-				-0.0
5,904,139	-				-0.5
5,904,139	-				+0.0
5,904,139	-				-0.2
5,904,139	-				-0.6
5,904,231	-				-0.3
5,904,231	-				+0.7
5,904,231	-				-1.6
5,904,238	+				+0.0
5,904,239	-				-1.2
5,904,310	+				-1.4
5,904,311	-				-0.0
5,904,311	-				+1.2
5,904,311	-				-0.4
5,904,311	-				-1.3
5,904,311	-				-1.1
5,904,356	+				-1.2
5,904,356	+				-0.1
5,904,356	+				-0.2
5,904,356	+				+0.5
5,904,356	+				-1.0
5,904,356	+				-1.3
5,904,357	-				-0.5
5,904,357	-				-0.5
5,904,357	-				+0.9
5,904,389	+				+1.1
5,904,389	+				-1.0
5,904,389	+				-1.2
5,904,390	-				+0.4
5,904,390	-				-0.7
5,904,390	-				+0.5
5,904,431	+		PFR28_05154	0.14	-0.7
5,904,431	+		PFR28_05154	0.14	-1.4
5,904,432	-		PFR28_05154	0.14	+0.4
5,904,432	-		PFR28_05154	0.14	-1.1
5,904,432	-		PFR28_05154	0.14	+1.1
5,904,432	-		PFR28_05154	0.14	-0.0
5,904,432	-		PFR28_05154	0.14	-1.4
5,904,432	-		PFR28_05154	0.14	-0.9
5,904,432	-		PFR28_05154	0.14	-0.7
5,904,432	-		PFR28_05154	0.14	-0.6
5,904,432	-		PFR28_05154	0.14	+0.0
5,904,446	+		PFR28_05154	0.16	-0.4
5,904,447	-		PFR28_05154	0.16	+0.1
5,904,479	+		PFR28_05154	0.19	-0.0
5,904,480	-		PFR28_05154	0.19	-0.4
5,904,505	-		PFR28_05154	0.22	-1.6
5,904,549	+		PFR28_05154	0.27	-1.4
5,904,550	-		PFR28_05154	0.27	-0.3
5,904,551	+		PFR28_05154	0.27	+0.7
5,904,552	-		PFR28_05154	0.27	-0.8
5,904,552	-		PFR28_05154	0.27	+1.0
5,904,579	-		PFR28_05154	0.30	-0.6
5,904,631	+		PFR28_05154	0.36	-0.5
5,904,631	+		PFR28_05154	0.36	-1.2
5,904,653	+		PFR28_05154	0.38	+1.5
5,904,653	+		PFR28_05154	0.38	+0.3
5,904,653	+		PFR28_05154	0.38	+0.1
5,904,653	+		PFR28_05154	0.38	-1.1
5,904,653	+		PFR28_05154	0.38	-0.8
5,904,653	+		PFR28_05154	0.38	-0.4
5,904,653	+		PFR28_05154	0.38	-1.1
5,904,653	+		PFR28_05154	0.38	-0.2
5,904,654	-		PFR28_05154	0.38	-0.5
5,904,654	-		PFR28_05154	0.38	-0.5
5,904,654	-		PFR28_05154	0.38	+0.5
5,904,654	-		PFR28_05154	0.38	+0.9
5,904,654	-		PFR28_05154	0.38	-0.7
5,904,654	-		PFR28_05154	0.38	-0.6
5,904,752	+		PFR28_05154	0.49	-0.2
5,904,753	-		PFR28_05154	0.49	-2.3
5,904,806	+		PFR28_05154	0.55	+0.6
5,904,806	+		PFR28_05154	0.55	-1.3
5,904,806	+		PFR28_05154	0.55	-0.1
5,904,806	+		PFR28_05154	0.55	-0.3
5,904,806	+		PFR28_05154	0.55	-0.2
5,904,806	+		PFR28_05154	0.55	-1.9
5,904,806	+		PFR28_05154	0.55	-0.2
5,904,806	+		PFR28_05154	0.55	+0.4
5,904,806	+		PFR28_05154	0.55	-0.5
5,904,807	-		PFR28_05154	0.55	-1.1
5,904,807	-		PFR28_05154	0.55	-0.4
5,904,807	-		PFR28_05154	0.55	+0.2
5,904,807	-		PFR28_05154	0.55	-0.3
5,904,807	-		PFR28_05154	0.55	+0.4
5,904,818	+		PFR28_05154	0.56	+0.5
5,904,818	+		PFR28_05154	0.56	+0.5
5,904,818	+		PFR28_05154	0.56	-0.4
5,904,818	+		PFR28_05154	0.56	-0.9
5,904,818	+		PFR28_05154	0.56	-0.8
5,904,819	-		PFR28_05154	0.57	-0.1
5,904,819	-		PFR28_05154	0.57	+0.5
5,904,819	-		PFR28_05154	0.57	-0.1
5,904,819	-		PFR28_05154	0.57	-2.0
5,904,908	+		PFR28_05154	0.66	-0.0
5,904,908	+		PFR28_05154	0.66	-0.8
5,904,908	+		PFR28_05154	0.66	-1.1
5,904,909	-		PFR28_05154	0.66	-1.2
5,904,968	+		PFR28_05154	0.73	-0.5
5,904,969	-		PFR28_05154	0.73	-0.1
5,904,969	-		PFR28_05154	0.73	-0.5
5,904,986	+		PFR28_05154	0.75	-1.2
5,904,986	+		PFR28_05154	0.75	-0.5
5,904,987	-		PFR28_05154	0.75	-0.3
5,904,987	-		PFR28_05154	0.75	-0.0
5,904,987	-		PFR28_05154	0.75	-0.5
5,904,987	-		PFR28_05154	0.75	+0.0
5,904,987	-		PFR28_05154	0.75	-1.0
5,904,987	-		PFR28_05154	0.75	-0.7
5,904,987	-		PFR28_05154	0.75	-0.8
5,905,124	+		PFR28_05154	0.90	+0.3
5,905,124	+		PFR28_05154	0.90	-0.3
5,905,212	+				-0.6
5,905,212	+				-1.5
5,905,212	+				+0.9
5,905,212	+				-1.1
5,905,212	+				-0.3
5,905,212	+				-0.1
5,905,212	+				-1.5
5,905,213	-				-0.1
5,905,213	-				-1.8
5,905,213	-				+0.1
5,905,213	-				+0.1
5,905,213	-				-3.0
5,905,213	-				-0.3
5,905,213	-				-0.3
5,905,213	-				-0.8
5,905,213	-				-0.1
5,905,213	-				-1.7
5,905,214	+				-0.4
5,905,214	+				+0.6
5,905,214	+				+1.5
5,905,214	+				-0.1
5,905,214	+				+0.3
5,905,214	+				+1.3
5,905,214	+				-0.1
5,905,214	+				+0.8
5,905,214	+				-0.4
5,905,214	+				-0.5
5,905,214	+				-0.2
5,905,214	+				-1.0
5,905,214	+				+1.2
5,905,214	+				+0.4
5,905,214	+				-0.9
5,905,214	+				-0.1
5,905,214	+				-0.2
5,905,214	+				-0.2
5,905,214	+				-0.7
5,905,214	+				-0.4
5,905,214	+				-0.0
5,905,214	+				-0.4
5,905,214	+				+0.7
5,905,214	+				-0.8
5,905,214	+				+0.4
5,905,214	+				+0.3
5,905,214	+				-0.1
5,905,214	+				-0.0
5,905,214	+				+0.1
5,905,214	+				+0.3
5,905,215	-				-1.4
5,905,215	-				-0.6
5,905,215	-				+0.9
5,905,215	-				-2.1
5,905,215	-				-0.3
5,905,215	-				+0.5
5,905,215	-				-1.0
5,905,215	-				+0.3
5,905,215	-				-0.4
5,905,215	-				-0.2
5,905,215	-				-1.4
5,905,215	-				-1.1
5,905,215	-				-1.2
5,905,215	-				-0.3
5,905,215	-				-0.9
5,905,215	-				-1.0
5,905,215	-				+0.6
5,905,215	-				-1.5
5,905,215	-				-0.3
5,905,215	-				-0.1
5,905,215	-				+0.1
5,905,215	-				-0.5
5,905,215	-				+0.2
5,905,215	-				-0.1
5,905,215	-				-0.4
5,905,215	-				-1.0
5,905,215	-				-1.1
5,905,215	-				-2.2
5,905,215	-				-1.5
5,905,215	-				-0.6
5,905,215	-				-0.6
5,905,215	-				-0.4
5,905,215	-				-0.4
5,905,215	-				+0.1
5,905,215	-				-0.4
5,905,215	-				-0.8
5,905,215	-				+0.2
5,905,218	+				+0.5
5,905,218	+				+0.1
5,905,218	+				-0.5
5,905,218	+				-0.4
5,905,218	+				-1.4
5,905,218	+				+0.9
5,905,218	+				+0.1
5,905,218	+				+0.1
5,905,218	+				+0.3
5,905,218	+				+0.3
5,905,218	+				+0.6
5,905,218	+				+0.2
5,905,218	+				-0.5
5,905,218	+				+0.5
5,905,218	+				+0.0
5,905,218	+				-1.0
5,905,218	+				-1.7
5,905,218	+				+0.1
5,905,219	-				+0.0
5,905,219	-				-0.2
5,905,219	-				-0.1
5,905,219	-				-0.1
5,905,219	-				+0.1
5,905,219	-				-0.5
5,905,219	-				+0.6
5,905,219	-				-0.7
5,905,219	-				-0.3
5,905,219	-				-0.3
5,905,219	-				-0.4
5,905,219	-				-0.7
5,905,219	-				-0.4
5,905,219	-				-0.0
5,905,219	-				-2.8
5,905,219	-				-0.6
5,905,219	-				-1.3
5,905,219	-				-1.2
5,905,219	-				-0.0
5,905,219	-				-0.6
5,905,219	-				+0.7
5,905,219	-				-0.1
5,905,219	-				-0.4
5,905,219	-				-0.3
5,905,219	-				-1.0
5,905,219	-				+0.3
5,905,219	-				+0.2
5,905,219	-				-1.5
5,905,219	-				-0.5
5,905,234	-				-1.7
5,905,245	+				-0.6
5,905,246	-				+1.5
5,905,333	+				-1.4
5,905,333	+				-0.4
5,905,333	+				-0.5
5,905,334	-				+0.5
5,905,334	-				-0.3
5,905,492	+		PFR28_05155	0.21	-0.4
5,905,493	-		PFR28_05155	0.21	+0.2
5,905,493	-		PFR28_05155	0.21	-0.8
5,905,567	+		PFR28_05155	0.27	+0.6
5,905,567	+		PFR28_05155	0.27	-0.4
5,905,567	+		PFR28_05155	0.27	-0.4
5,905,567	+		PFR28_05155	0.27	-1.2
5,905,567	+		PFR28_05155	0.27	+0.9
5,905,567	+		PFR28_05155	0.27	-0.8
5,905,568	-		PFR28_05155	0.27	+0.4
5,905,568	-		PFR28_05155	0.27	+0.1
5,905,576	-		PFR28_05155	0.28	-1.2
5,905,576	-		PFR28_05155	0.28	+0.1
5,905,600	+		PFR28_05155	0.30	-1.0
5,905,600	+		PFR28_05155	0.30	+0.0
5,905,600	+		PFR28_05155	0.30	-2.4
5,905,601	-		PFR28_05155	0.30	-0.5
5,905,601	-		PFR28_05155	0.30	-1.1
5,905,601	-		PFR28_05155	0.30	-0.4
5,905,601	-		PFR28_05155	0.30	-0.4
5,905,601	-		PFR28_05155	0.30	-1.3
5,905,601	-		PFR28_05155	0.30	+0.3
5,905,601	-		PFR28_05155	0.30	-0.8
5,905,663	+		PFR28_05155	0.35	-0.8
5,905,663	+		PFR28_05155	0.35	-0.5
5,905,675	+		PFR28_05155	0.36	+0.1
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