Strain Fitness in Serratia liquefaciens MT49 around IAI46_24820

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24810 and IAI46_24815 are separated by 79 nucleotidesIAI46_24815 and IAI46_24820 are separated by 11 nucleotidesIAI46_24820 and IAI46_24825 are separated by 263 nucleotides IAI46_24810: IAI46_24810 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 5,295,347 to 5,296,156 _24810 IAI46_24815: IAI46_24815 - 50S ribosomal protein L33, at 5,296,236 to 5,296,403 _24815 IAI46_24820: IAI46_24820 - 50S ribosomal protein L28, at 5,296,415 to 5,296,651 _24820 IAI46_24825: IAI46_24825 - DNA repair protein RadC, at 5,296,915 to 5,297,598 _24825 Position (kb) 5296 5297Strain fitness (log2 ratio) -1 0 1at 5295.447 kb on + strand, within IAI46_24810at 5295.448 kb on - strand, within IAI46_24810at 5295.482 kb on - strand, within IAI46_24810at 5295.626 kb on - strand, within IAI46_24810at 5295.645 kb on + strand, within IAI46_24810at 5295.646 kb on - strand, within IAI46_24810at 5295.646 kb on - strand, within IAI46_24810at 5295.646 kb on - strand, within IAI46_24810at 5295.676 kb on + strand, within IAI46_24810at 5295.732 kb on + strand, within IAI46_24810at 5295.732 kb on + strand, within IAI46_24810at 5295.732 kb on + strand, within IAI46_24810at 5295.733 kb on - strand, within IAI46_24810at 5295.733 kb on - strand, within IAI46_24810at 5295.743 kb on - strand, within IAI46_24810at 5295.841 kb on + strand, within IAI46_24810at 5295.841 kb on + strand, within IAI46_24810at 5295.843 kb on + strand, within IAI46_24810at 5295.843 kb on + strand, within IAI46_24810at 5295.844 kb on - strand, within IAI46_24810at 5295.844 kb on - strand, within IAI46_24810at 5295.953 kb on - strand, within IAI46_24810at 5295.984 kb on + strand, within IAI46_24810at 5295.984 kb on + strand, within IAI46_24810at 5295.984 kb on + strand, within IAI46_24810at 5295.985 kb on - strand, within IAI46_24810at 5295.985 kb on - strand, within IAI46_24810at 5296.107 kb on + strandat 5296.108 kb on - strandat 5296.108 kb on - strandat 5296.189 kb on - strandat 5296.884 kb on - strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.961 kb on - strandat 5296.963 kb on - strandat 5296.993 kb on + strand, within IAI46_24825at 5297.056 kb on - strand, within IAI46_24825at 5297.071 kb on - strand, within IAI46_24825at 5297.071 kb on - strand, within IAI46_24825at 5297.071 kb on - strand, within IAI46_24825at 5297.071 kb on - strand, within IAI46_24825at 5297.083 kb on - strand, within IAI46_24825at 5297.098 kb on - strand, within IAI46_24825at 5297.134 kb on + strand, within IAI46_24825at 5297.134 kb on + strand, within IAI46_24825at 5297.135 kb on - strand, within IAI46_24825at 5297.135 kb on - strand, within IAI46_24825at 5297.135 kb on - strand, within IAI46_24825at 5297.154 kb on + strand, within IAI46_24825at 5297.155 kb on - strand, within IAI46_24825at 5297.155 kb on - strand, within IAI46_24825at 5297.155 kb on - strand, within IAI46_24825at 5297.155 kb on - strand, within IAI46_24825at 5297.182 kb on - strand, within IAI46_24825at 5297.209 kb on + strand, within IAI46_24825at 5297.255 kb on + strand, within IAI46_24825at 5297.255 kb on + strand, within IAI46_24825at 5297.256 kb on - strand, within IAI46_24825at 5297.256 kb on - strand, within IAI46_24825at 5297.354 kb on + strand, within IAI46_24825at 5297.355 kb on - strand, within IAI46_24825at 5297.355 kb on - strand, within IAI46_24825at 5297.364 kb on + strand, within IAI46_24825at 5297.417 kb on + strand, within IAI46_24825at 5297.440 kb on + strand, within IAI46_24825at 5297.440 kb on + strand, within IAI46_24825at 5297.460 kb on + strand, within IAI46_24825at 5297.565 kb on + strandat 5297.565 kb on + strandat 5297.566 kb on - strandat 5297.566 kb on - strandat 5297.566 kb on - strandat 5297.585 kb on - strandat 5297.600 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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5,295,447 + IAI46_24810 0.12 -0.3
5,295,448 - IAI46_24810 0.12 +0.6
5,295,482 - IAI46_24810 0.17 -0.7
5,295,626 - IAI46_24810 0.34 -0.5
5,295,645 + IAI46_24810 0.37 -0.1
5,295,646 - IAI46_24810 0.37 -0.3
5,295,646 - IAI46_24810 0.37 +0.6
5,295,646 - IAI46_24810 0.37 +0.4
5,295,676 + IAI46_24810 0.41 -0.3
5,295,732 + IAI46_24810 0.48 -0.7
5,295,732 + IAI46_24810 0.48 +1.1
5,295,732 + IAI46_24810 0.48 +0.1
5,295,733 - IAI46_24810 0.48 +0.9
5,295,733 - IAI46_24810 0.48 -0.6
5,295,743 - IAI46_24810 0.49 +0.4
5,295,841 + IAI46_24810 0.61 +0.7
5,295,841 + IAI46_24810 0.61 +0.8
5,295,843 + IAI46_24810 0.61 -0.3
5,295,843 + IAI46_24810 0.61 +0.8
5,295,844 - IAI46_24810 0.61 -0.3
5,295,844 - IAI46_24810 0.61 +0.9
5,295,953 - IAI46_24810 0.75 +1.4
5,295,984 + IAI46_24810 0.79 +0.1
5,295,984 + IAI46_24810 0.79 -0.4
5,295,984 + IAI46_24810 0.79 +0.3
5,295,985 - IAI46_24810 0.79 +0.4
5,295,985 - IAI46_24810 0.79 -0.2
5,296,107 + +0.9
5,296,108 - +0.6
5,296,108 - -1.7
5,296,189 - -0.5
5,296,884 - +0.3
5,296,960 + +0.6
5,296,960 + +0.7
5,296,960 + -0.6
5,296,960 + -0.6
5,296,960 + -0.1
5,296,960 + -1.6
5,296,961 - +0.4
5,296,963 - -0.7
5,296,993 + IAI46_24825 0.11 -0.3
5,297,056 - IAI46_24825 0.21 -0.1
5,297,071 - IAI46_24825 0.23 +0.3
5,297,071 - IAI46_24825 0.23 +0.3
5,297,071 - IAI46_24825 0.23 +0.1
5,297,071 - IAI46_24825 0.23 -0.2
5,297,083 - IAI46_24825 0.25 -0.2
5,297,098 - IAI46_24825 0.27 -0.3
5,297,134 + IAI46_24825 0.32 -0.6
5,297,134 + IAI46_24825 0.32 +0.6
5,297,135 - IAI46_24825 0.32 -0.1
5,297,135 - IAI46_24825 0.32 -1.3
5,297,135 - IAI46_24825 0.32 -0.4
5,297,154 + IAI46_24825 0.35 -0.2
5,297,155 - IAI46_24825 0.35 -0.3
5,297,155 - IAI46_24825 0.35 -0.3
5,297,155 - IAI46_24825 0.35 -0.1
5,297,155 - IAI46_24825 0.35 -0.6
5,297,182 - IAI46_24825 0.39 +0.6
5,297,209 + IAI46_24825 0.43 -0.1
5,297,255 + IAI46_24825 0.50 -0.1
5,297,255 + IAI46_24825 0.50 -0.8
5,297,256 - IAI46_24825 0.50 +0.1
5,297,256 - IAI46_24825 0.50 -0.1
5,297,354 + IAI46_24825 0.64 +0.6
5,297,355 - IAI46_24825 0.64 -0.2
5,297,355 - IAI46_24825 0.64 +1.2
5,297,364 + IAI46_24825 0.66 +0.3
5,297,417 + IAI46_24825 0.73 +0.7
5,297,440 + IAI46_24825 0.77 -0.2
5,297,440 + IAI46_24825 0.77 -0.0
5,297,460 + IAI46_24825 0.80 +0.0
5,297,565 + +0.4
5,297,565 + +0.0
5,297,566 - -0.2
5,297,566 - +0.1
5,297,566 - -0.2
5,297,585 - +0.4
5,297,600 - +0.9

Or see this region's nucleotide sequence