Strain Fitness in Serratia liquefaciens MT49 around IAI46_24040

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24030 and IAI46_24035 are separated by 68 nucleotidesIAI46_24035 and IAI46_24040 overlap by 14 nucleotidesIAI46_24040 and IAI46_24045 are separated by 184 nucleotidesIAI46_24045 and IAI46_24050 are separated by 15 nucleotides IAI46_24030: IAI46_24030 - TIM barrel protein, at 5,119,975 to 5,120,811 _24030 IAI46_24035: IAI46_24035 - iron export ABC transporter permease subunit FetB, at 5,120,880 to 5,121,653 _24035 IAI46_24040: IAI46_24040 - iron ABC transporter ATP-binding protein FetA, at 5,121,640 to 5,122,317 _24040 IAI46_24045: IAI46_24045 - hypothetical protein, at 5,122,502 to 5,122,783 _24045 IAI46_24050: IAI46_24050 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 5,122,799 to 5,123,965 _24050 Position (kb) 5121 5122 5123Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5120.768 kb on + strandat 5120.768 kb on + strandat 5120.768 kb on + strandat 5120.768 kb on + strandat 5120.768 kb on + strandat 5120.769 kb on - strandat 5120.769 kb on - strandat 5120.769 kb on - strandat 5120.868 kb on - strandat 5120.920 kb on + strandat 5120.921 kb on - strandat 5120.921 kb on - strandat 5120.921 kb on - strandat 5120.996 kb on + strand, within IAI46_24035at 5120.996 kb on + strand, within IAI46_24035at 5120.996 kb on + strand, within IAI46_24035at 5120.997 kb on - strand, within IAI46_24035at 5121.009 kb on - strand, within IAI46_24035at 5121.102 kb on - strand, within IAI46_24035at 5121.123 kb on - strand, within IAI46_24035at 5121.229 kb on + strand, within IAI46_24035at 5121.229 kb on + strand, within IAI46_24035at 5121.229 kb on + strand, within IAI46_24035at 5121.229 kb on + strand, within IAI46_24035at 5121.229 kb on + strand, within IAI46_24035at 5121.230 kb on - strand, within IAI46_24035at 5121.230 kb on - strand, within IAI46_24035at 5121.230 kb on - strand, within IAI46_24035at 5121.230 kb on - strand, within IAI46_24035at 5121.230 kb on - strand, within IAI46_24035at 5121.230 kb on - strand, within IAI46_24035at 5121.322 kb on - strand, within IAI46_24035at 5121.339 kb on + strand, within IAI46_24035at 5121.339 kb on + strand, within IAI46_24035at 5121.365 kb on + strand, within IAI46_24035at 5121.365 kb on + strand, within IAI46_24035at 5121.377 kb on + strand, within IAI46_24035at 5121.377 kb on + strand, within IAI46_24035at 5121.378 kb on - strand, within IAI46_24035at 5121.378 kb on - strand, within IAI46_24035at 5121.378 kb on - strand, within IAI46_24035at 5121.378 kb on - strand, within IAI46_24035at 5121.393 kb on - strand, within IAI46_24035at 5121.394 kb on + strand, within IAI46_24035at 5121.394 kb on + strand, within IAI46_24035at 5121.394 kb on + strand, within IAI46_24035at 5121.395 kb on - strand, within IAI46_24035at 5121.395 kb on - strand, within IAI46_24035at 5121.395 kb on - strand, within IAI46_24035at 5121.398 kb on + strand, within IAI46_24035at 5121.399 kb on - strand, within IAI46_24035at 5121.418 kb on + strand, within IAI46_24035at 5121.419 kb on - strand, within IAI46_24035at 5121.419 kb on - strand, within IAI46_24035at 5121.419 kb on - strand, within IAI46_24035at 5121.419 kb on - strand, within IAI46_24035at 5121.429 kb on - strand, within IAI46_24035at 5121.429 kb on - strand, within IAI46_24035at 5121.437 kb on + strand, within IAI46_24035at 5121.437 kb on + strand, within IAI46_24035at 5121.438 kb on - strand, within IAI46_24035at 5121.438 kb on - strand, within IAI46_24035at 5121.438 kb on - strand, within IAI46_24035at 5121.471 kb on - strand, within IAI46_24035at 5121.471 kb on - strand, within IAI46_24035at 5121.471 kb on - strand, within IAI46_24035at 5121.471 kb on - strand, within IAI46_24035at 5121.474 kb on + strand, within IAI46_24035at 5121.474 kb on + strand, within IAI46_24035at 5121.475 kb on - strand, within IAI46_24035at 5121.475 kb on - strand, within IAI46_24035at 5121.475 kb on - strand, within IAI46_24035at 5121.487 kb on + strand, within IAI46_24035at 5121.545 kb on + strand, within IAI46_24035at 5121.545 kb on + strand, within IAI46_24035at 5121.545 kb on + strand, within IAI46_24035at 5121.545 kb on + strand, within IAI46_24035at 5121.546 kb on - strand, within IAI46_24035at 5121.576 kb on - strandat 5121.586 kb on - strandat 5121.596 kb on + strandat 5121.597 kb on - strandat 5121.606 kb on + strandat 5121.607 kb on - strandat 5121.641 kb on + strandat 5121.641 kb on + strandat 5121.642 kb on - strandat 5121.642 kb on - strandat 5121.693 kb on + strandat 5121.802 kb on - strand, within IAI46_24040at 5121.804 kb on + strand, within IAI46_24040at 5121.805 kb on - strand, within IAI46_24040at 5121.805 kb on - strand, within IAI46_24040at 5121.838 kb on + strand, within IAI46_24040at 5121.839 kb on - strand, within IAI46_24040at 5121.855 kb on + strand, within IAI46_24040at 5121.855 kb on + strand, within IAI46_24040at 5121.931 kb on - strand, within IAI46_24040at 5122.017 kb on + strand, within IAI46_24040at 5122.018 kb on - strand, within IAI46_24040at 5122.026 kb on - strand, within IAI46_24040at 5122.026 kb on - strand, within IAI46_24040at 5122.026 kb on - strand, within IAI46_24040at 5122.026 kb on - strand, within IAI46_24040at 5122.026 kb on - strand, within IAI46_24040at 5122.064 kb on + strand, within IAI46_24040at 5122.065 kb on - strand, within IAI46_24040at 5122.098 kb on + strand, within IAI46_24040at 5122.098 kb on + strand, within IAI46_24040at 5122.099 kb on - strand, within IAI46_24040at 5122.249 kb on + strand, within IAI46_24040at 5122.267 kb on + strandat 5122.281 kb on + strandat 5122.282 kb on - strandat 5122.282 kb on - strandat 5122.297 kb on + strandat 5122.318 kb on + strandat 5122.319 kb on - strandat 5122.320 kb on + strandat 5122.320 kb on + strandat 5122.320 kb on + strandat 5122.320 kb on + strandat 5122.320 kb on + strandat 5122.320 kb on + strandat 5122.321 kb on - strandat 5122.321 kb on - strandat 5122.321 kb on - strandat 5122.364 kb on + strandat 5122.364 kb on + strandat 5122.365 kb on - strandat 5122.366 kb on + strandat 5122.367 kb on - strandat 5122.409 kb on + strandat 5122.475 kb on - strandat 5122.528 kb on + strandat 5122.528 kb on + strandat 5122.529 kb on - strandat 5122.546 kb on + strand, within IAI46_24045at 5122.547 kb on - strand, within IAI46_24045at 5122.564 kb on + strand, within IAI46_24045at 5122.564 kb on + strand, within IAI46_24045at 5122.565 kb on - strand, within IAI46_24045at 5122.576 kb on + strand, within IAI46_24045at 5122.576 kb on + strand, within IAI46_24045at 5122.598 kb on + strand, within IAI46_24045at 5122.599 kb on - strand, within IAI46_24045at 5122.657 kb on + strand, within IAI46_24045at 5122.736 kb on + strand, within IAI46_24045at 5122.737 kb on - strand, within IAI46_24045at 5122.737 kb on - strand, within IAI46_24045at 5122.741 kb on + strand, within IAI46_24045at 5122.741 kb on + strand, within IAI46_24045at 5122.741 kb on + strand, within IAI46_24045at 5122.741 kb on + strand, within IAI46_24045at 5122.742 kb on - strand, within IAI46_24045at 5122.742 kb on - strand, within IAI46_24045at 5122.742 kb on - strand, within IAI46_24045at 5122.742 kb on - strand, within IAI46_24045at 5122.761 kb on + strandat 5122.761 kb on + strandat 5122.761 kb on + strandat 5122.761 kb on + strandat 5122.762 kb on - strandat 5122.762 kb on - strandat 5122.762 kb on - strandat 5122.762 kb on - strandat 5122.767 kb on - strandat 5122.788 kb on + strandat 5122.788 kb on + strandat 5122.788 kb on + strandat 5122.800 kb on + strandat 5122.851 kb on + strandat 5122.903 kb on - strandat 5123.005 kb on + strand, within IAI46_24050at 5123.005 kb on + strand, within IAI46_24050at 5123.005 kb on + strand, within IAI46_24050at 5123.006 kb on - strand, within IAI46_24050at 5123.006 kb on - strand, within IAI46_24050at 5123.026 kb on + strand, within IAI46_24050at 5123.027 kb on - strand, within IAI46_24050at 5123.063 kb on + strand, within IAI46_24050at 5123.093 kb on + strand, within IAI46_24050at 5123.094 kb on - strand, within IAI46_24050at 5123.112 kb on + strand, within IAI46_24050at 5123.113 kb on - strand, within IAI46_24050at 5123.127 kb on + strand, within IAI46_24050at 5123.189 kb on - strand, within IAI46_24050at 5123.305 kb on + strand, within IAI46_24050

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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5,120,768 + +1.1
5,120,768 + -0.1
5,120,768 + -0.1
5,120,768 + +0.8
5,120,768 + -0.4
5,120,769 - -0.6
5,120,769 - -0.2
5,120,769 - -0.0
5,120,868 - +0.5
5,120,920 + +1.2
5,120,921 - +0.5
5,120,921 - +0.6
5,120,921 - +0.6
5,120,996 + IAI46_24035 0.15 -0.3
5,120,996 + IAI46_24035 0.15 +0.3
5,120,996 + IAI46_24035 0.15 +1.0
5,120,997 - IAI46_24035 0.15 +0.2
5,121,009 - IAI46_24035 0.17 +0.5
5,121,102 - IAI46_24035 0.29 +0.9
5,121,123 - IAI46_24035 0.31 +0.3
5,121,229 + IAI46_24035 0.45 -0.6
5,121,229 + IAI46_24035 0.45 -0.9
5,121,229 + IAI46_24035 0.45 +0.3
5,121,229 + IAI46_24035 0.45 +0.6
5,121,229 + IAI46_24035 0.45 +0.2
5,121,230 - IAI46_24035 0.45 +1.1
5,121,230 - IAI46_24035 0.45 -0.7
5,121,230 - IAI46_24035 0.45 -0.0
5,121,230 - IAI46_24035 0.45 +0.3
5,121,230 - IAI46_24035 0.45 +0.4
5,121,230 - IAI46_24035 0.45 +0.4
5,121,322 - IAI46_24035 0.57 +0.2
5,121,339 + IAI46_24035 0.59 -0.2
5,121,339 + IAI46_24035 0.59 +0.6
5,121,365 + IAI46_24035 0.63 -1.2
5,121,365 + IAI46_24035 0.63 -1.9
5,121,377 + IAI46_24035 0.64 -0.4
5,121,377 + IAI46_24035 0.64 +0.9
5,121,378 - IAI46_24035 0.64 +0.6
5,121,378 - IAI46_24035 0.64 +0.6
5,121,378 - IAI46_24035 0.64 +0.2
5,121,378 - IAI46_24035 0.64 -0.5
5,121,393 - IAI46_24035 0.66 +0.5
5,121,394 + IAI46_24035 0.66 -0.5
5,121,394 + IAI46_24035 0.66 +0.7
5,121,394 + IAI46_24035 0.66 +0.9
5,121,395 - IAI46_24035 0.67 -0.4
5,121,395 - IAI46_24035 0.67 -0.4
5,121,395 - IAI46_24035 0.67 -2.9
5,121,398 + IAI46_24035 0.67 +0.3
5,121,399 - IAI46_24035 0.67 +0.0
5,121,418 + IAI46_24035 0.70 +0.1
5,121,419 - IAI46_24035 0.70 -0.2
5,121,419 - IAI46_24035 0.70 +1.3
5,121,419 - IAI46_24035 0.70 +0.3
5,121,419 - IAI46_24035 0.70 +0.3
5,121,429 - IAI46_24035 0.71 -0.3
5,121,429 - IAI46_24035 0.71 +0.3
5,121,437 + IAI46_24035 0.72 +1.3
5,121,437 + IAI46_24035 0.72 +0.5
5,121,438 - IAI46_24035 0.72 -0.7
5,121,438 - IAI46_24035 0.72 +0.8
5,121,438 - IAI46_24035 0.72 +0.4
5,121,471 - IAI46_24035 0.76 +0.3
5,121,471 - IAI46_24035 0.76 -0.4
5,121,471 - IAI46_24035 0.76 +1.0
5,121,471 - IAI46_24035 0.76 +1.4
5,121,474 + IAI46_24035 0.77 +0.9
5,121,474 + IAI46_24035 0.77 +0.8
5,121,475 - IAI46_24035 0.77 -0.4
5,121,475 - IAI46_24035 0.77 +0.0
5,121,475 - IAI46_24035 0.77 +1.0
5,121,487 + IAI46_24035 0.78 +0.5
5,121,545 + IAI46_24035 0.86 -0.2
5,121,545 + IAI46_24035 0.86 -0.2
5,121,545 + IAI46_24035 0.86 +0.0
5,121,545 + IAI46_24035 0.86 -0.1
5,121,546 - IAI46_24035 0.86 -0.0
5,121,576 - -0.4
5,121,586 - +0.5
5,121,596 + -0.6
5,121,597 - +0.3
5,121,606 + +0.4
5,121,607 - -1.4
5,121,641 + +0.5
5,121,641 + +0.3
5,121,642 - -0.7
5,121,642 - +0.7
5,121,693 + -0.1
5,121,802 - IAI46_24040 0.24 -0.3
5,121,804 + IAI46_24040 0.24 -0.3
5,121,805 - IAI46_24040 0.24 +0.3
5,121,805 - IAI46_24040 0.24 -0.4
5,121,838 + IAI46_24040 0.29 +0.3
5,121,839 - IAI46_24040 0.29 +1.6
5,121,855 + IAI46_24040 0.32 +0.7
5,121,855 + IAI46_24040 0.32 +0.1
5,121,931 - IAI46_24040 0.43 +0.6
5,122,017 + IAI46_24040 0.56 +0.9
5,122,018 - IAI46_24040 0.56 +0.7
5,122,026 - IAI46_24040 0.57 +1.1
5,122,026 - IAI46_24040 0.57 +0.4
5,122,026 - IAI46_24040 0.57 -0.7
5,122,026 - IAI46_24040 0.57 +1.0
5,122,026 - IAI46_24040 0.57 +1.0
5,122,064 + IAI46_24040 0.63 +0.5
5,122,065 - IAI46_24040 0.63 +0.5
5,122,098 + IAI46_24040 0.68 +0.5
5,122,098 + IAI46_24040 0.68 +1.5
5,122,099 - IAI46_24040 0.68 -0.3
5,122,249 + IAI46_24040 0.90 +0.1
5,122,267 + -0.2
5,122,281 + +0.2
5,122,282 - +0.4
5,122,282 - -0.7
5,122,297 + +1.2
5,122,318 + +0.3
5,122,319 - +0.9
5,122,320 + -1.7
5,122,320 + -0.2
5,122,320 + +0.7
5,122,320 + -0.3
5,122,320 + -1.2
5,122,320 + +0.3
5,122,321 - +0.4
5,122,321 - +1.5
5,122,321 - -0.2
5,122,364 + +0.3
5,122,364 + +0.0
5,122,365 - +0.6
5,122,366 + +0.3
5,122,367 - -0.1
5,122,409 + -0.8
5,122,475 - +1.0
5,122,528 + +0.3
5,122,528 + +0.3
5,122,529 - -1.0
5,122,546 + IAI46_24045 0.16 +0.1
5,122,547 - IAI46_24045 0.16 +0.4
5,122,564 + IAI46_24045 0.22 +0.3
5,122,564 + IAI46_24045 0.22 +0.0
5,122,565 - IAI46_24045 0.22 -0.3
5,122,576 + IAI46_24045 0.26 -0.0
5,122,576 + IAI46_24045 0.26 -0.5
5,122,598 + IAI46_24045 0.34 +0.3
5,122,599 - IAI46_24045 0.34 -0.3
5,122,657 + IAI46_24045 0.55 -0.1
5,122,736 + IAI46_24045 0.83 +1.0
5,122,737 - IAI46_24045 0.83 +0.8
5,122,737 - IAI46_24045 0.83 +0.5
5,122,741 + IAI46_24045 0.85 +0.2
5,122,741 + IAI46_24045 0.85 -1.0
5,122,741 + IAI46_24045 0.85 -0.1
5,122,741 + IAI46_24045 0.85 +0.1
5,122,742 - IAI46_24045 0.85 -0.7
5,122,742 - IAI46_24045 0.85 -0.1
5,122,742 - IAI46_24045 0.85 +0.7
5,122,742 - IAI46_24045 0.85 +0.7
5,122,761 + +0.2
5,122,761 + -0.5
5,122,761 + -0.5
5,122,761 + +0.6
5,122,762 - -0.1
5,122,762 - +0.7
5,122,762 - -0.0
5,122,762 - +2.1
5,122,767 - +0.6
5,122,788 + +0.2
5,122,788 + -0.8
5,122,788 + +0.3
5,122,800 + -0.3
5,122,851 + +0.8
5,122,903 - +0.2
5,123,005 + IAI46_24050 0.18 -0.3
5,123,005 + IAI46_24050 0.18 +0.1
5,123,005 + IAI46_24050 0.18 -0.1
5,123,006 - IAI46_24050 0.18 +0.3
5,123,006 - IAI46_24050 0.18 +0.5
5,123,026 + IAI46_24050 0.19 +0.4
5,123,027 - IAI46_24050 0.20 +0.7
5,123,063 + IAI46_24050 0.23 -2.0
5,123,093 + IAI46_24050 0.25 +0.2
5,123,094 - IAI46_24050 0.25 -1.2
5,123,112 + IAI46_24050 0.27 -0.6
5,123,113 - IAI46_24050 0.27 -0.3
5,123,127 + IAI46_24050 0.28 +1.1
5,123,189 - IAI46_24050 0.33 -0.1
5,123,305 + IAI46_24050 0.43 +1.8

Or see this region's nucleotide sequence