Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_22370 and IAI46_22375 are separated by 15 nucleotides IAI46_22375 and IAI46_22380 are separated by 274 nucleotides IAI46_22380 and IAI46_22385 are separated by 231 nucleotides IAI46_22385 and IAI46_22390 are separated by 195 nucleotides
IAI46_22370: IAI46_22370 - 30S ribosomal protein S9, at 4,768,143 to 4,768,535
_22370
IAI46_22375: IAI46_22375 - 50S ribosomal protein L13, at 4,768,551 to 4,768,979
_22375
IAI46_22380: IAI46_22380 - cell division protein ZapE, at 4,769,254 to 4,770,381
_22380
IAI46_22385: IAI46_22385 - DUF1043 family protein, at 4,770,613 to 4,771,014
_22385
IAI46_22390: IAI46_22390 - serine endoprotease DegQ, at 4,771,210 to 4,772,580
_22390
Position (kb) 4769
4770
4771 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4769.005 kb on - strand at 4769.087 kb on - strand at 4769.103 kb on - strand at 4769.203 kb on - strand at 4769.203 kb on - strand at 4769.203 kb on - strand at 4769.279 kb on + strand at 4769.280 kb on - strand at 4769.324 kb on + strand at 4769.351 kb on + strand at 4769.352 kb on - strand at 4769.443 kb on - strand, within IAI46_22380 at 4769.475 kb on + strand, within IAI46_22380 at 4769.475 kb on + strand, within IAI46_22380 at 4769.476 kb on - strand, within IAI46_22380 at 4769.476 kb on - strand, within IAI46_22380 at 4769.476 kb on - strand, within IAI46_22380 at 4769.477 kb on + strand, within IAI46_22380 at 4769.478 kb on - strand, within IAI46_22380 at 4769.506 kb on + strand, within IAI46_22380 at 4769.506 kb on + strand, within IAI46_22380 at 4769.550 kb on + strand, within IAI46_22380 at 4769.550 kb on + strand, within IAI46_22380 at 4769.578 kb on + strand, within IAI46_22380 at 4769.709 kb on - strand, within IAI46_22380 at 4769.709 kb on - strand, within IAI46_22380 at 4769.777 kb on + strand, within IAI46_22380 at 4769.778 kb on - strand, within IAI46_22380 at 4769.778 kb on - strand, within IAI46_22380 at 4769.853 kb on + strand, within IAI46_22380 at 4769.853 kb on + strand, within IAI46_22380 at 4769.853 kb on + strand, within IAI46_22380 at 4769.875 kb on - strand, within IAI46_22380 at 4769.875 kb on - strand, within IAI46_22380 at 4770.076 kb on + strand, within IAI46_22380 at 4770.076 kb on + strand, within IAI46_22380 at 4770.077 kb on - strand, within IAI46_22380 at 4770.077 kb on - strand, within IAI46_22380 at 4770.111 kb on + strand, within IAI46_22380 at 4770.153 kb on + strand, within IAI46_22380 at 4770.153 kb on + strand, within IAI46_22380 at 4770.153 kb on + strand, within IAI46_22380 at 4770.154 kb on - strand, within IAI46_22380 at 4770.154 kb on - strand, within IAI46_22380 at 4770.154 kb on - strand, within IAI46_22380 at 4770.154 kb on - strand, within IAI46_22380 at 4770.154 kb on - strand, within IAI46_22380 at 4770.154 kb on - strand, within IAI46_22380 at 4770.154 kb on - strand, within IAI46_22380 at 4770.154 kb on - strand, within IAI46_22380 at 4770.155 kb on + strand, within IAI46_22380 at 4770.155 kb on + strand, within IAI46_22380 at 4770.155 kb on + strand, within IAI46_22380 at 4770.155 kb on + strand, within IAI46_22380 at 4770.155 kb on + strand, within IAI46_22380 at 4770.156 kb on - strand, within IAI46_22380 at 4770.156 kb on - strand, within IAI46_22380 at 4770.156 kb on - strand, within IAI46_22380 at 4770.156 kb on - strand, within IAI46_22380 at 4770.156 kb on - strand, within IAI46_22380 at 4770.156 kb on - strand, within IAI46_22380 at 4770.156 kb on - strand, within IAI46_22380 at 4770.156 kb on - strand, within IAI46_22380 at 4770.156 kb on - strand, within IAI46_22380 at 4770.156 kb on - strand, within IAI46_22380 at 4770.156 kb on - strand, within IAI46_22380 at 4770.156 kb on - strand, within IAI46_22380 at 4770.157 kb on + strand, within IAI46_22380 at 4770.157 kb on + strand, within IAI46_22380 at 4770.157 kb on + strand, within IAI46_22380 at 4770.157 kb on + strand, within IAI46_22380 at 4770.157 kb on + strand, within IAI46_22380 at 4770.157 kb on + strand, within IAI46_22380 at 4770.158 kb on - strand, within IAI46_22380 at 4770.158 kb on - strand, within IAI46_22380 at 4770.158 kb on - strand, within IAI46_22380 at 4770.158 kb on - strand, within IAI46_22380 at 4770.158 kb on - strand, within IAI46_22380 at 4770.158 kb on - strand, within IAI46_22380 at 4770.256 kb on + strand, within IAI46_22380 at 4770.275 kb on + strand at 4770.275 kb on + strand at 4770.275 kb on + strand at 4770.276 kb on - strand at 4770.276 kb on - strand at 4770.276 kb on - strand at 4770.276 kb on - strand at 4770.276 kb on - strand at 4770.279 kb on + strand at 4770.279 kb on + strand at 4770.279 kb on + strand at 4770.279 kb on + strand at 4770.279 kb on + strand at 4770.280 kb on - strand at 4770.280 kb on - strand at 4770.327 kb on - strand at 4770.327 kb on - strand at 4770.397 kb on + strand at 4770.415 kb on - strand at 4770.437 kb on - strand at 4770.439 kb on + strand at 4770.458 kb on + strand at 4770.458 kb on + strand at 4770.552 kb on - strand at 4770.553 kb on + strand at 4770.563 kb on + strand at 4770.567 kb on - strand at 4770.602 kb on + strand at 4770.603 kb on - strand at 4770.729 kb on + strand, within IAI46_22385 at 4770.832 kb on + strand, within IAI46_22385 at 4770.832 kb on + strand, within IAI46_22385 at 4770.833 kb on - strand, within IAI46_22385 at 4770.840 kb on + strand, within IAI46_22385 at 4771.066 kb on - strand at 4771.066 kb on - strand at 4771.066 kb on - strand at 4771.087 kb on + strand at 4771.087 kb on + strand at 4771.137 kb on + strand at 4771.147 kb on + strand at 4771.147 kb on + strand at 4771.148 kb on - strand at 4771.152 kb on + strand at 4771.166 kb on + strand at 4771.166 kb on + strand at 4771.166 kb on + strand at 4771.167 kb on - strand at 4771.175 kb on + strand at 4771.175 kb on + strand at 4771.176 kb on - strand at 4771.202 kb on + strand at 4771.202 kb on + strand at 4771.202 kb on + strand at 4771.202 kb on + strand at 4771.203 kb on - strand at 4771.234 kb on - strand at 4771.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 4,769,005 - +0.2 4,769,087 - +0.2 4,769,103 - -1.1 4,769,203 - -0.1 4,769,203 - +0.2 4,769,203 - -0.4 4,769,279 + -0.5 4,769,280 - -0.6 4,769,324 + -2.4 4,769,351 + +1.0 4,769,352 - +0.3 4,769,443 - IAI46_22380 0.17 -0.1 4,769,475 + IAI46_22380 0.20 -0.6 4,769,475 + IAI46_22380 0.20 -0.2 4,769,476 - IAI46_22380 0.20 -0.2 4,769,476 - IAI46_22380 0.20 -0.4 4,769,476 - IAI46_22380 0.20 +1.4 4,769,477 + IAI46_22380 0.20 -0.5 4,769,478 - IAI46_22380 0.20 -0.3 4,769,506 + IAI46_22380 0.22 -0.0 4,769,506 + IAI46_22380 0.22 -0.1 4,769,550 + IAI46_22380 0.26 -0.3 4,769,550 + IAI46_22380 0.26 -0.7 4,769,578 + IAI46_22380 0.29 -0.1 4,769,709 - IAI46_22380 0.40 -1.0 4,769,709 - IAI46_22380 0.40 +0.1 4,769,777 + IAI46_22380 0.46 -1.5 4,769,778 - IAI46_22380 0.46 +0.8 4,769,778 - IAI46_22380 0.46 -1.2 4,769,853 + IAI46_22380 0.53 +0.2 4,769,853 + IAI46_22380 0.53 +0.2 4,769,853 + IAI46_22380 0.53 +0.5 4,769,875 - IAI46_22380 0.55 +0.7 4,769,875 - IAI46_22380 0.55 -0.0 4,770,076 + IAI46_22380 0.73 +0.8 4,770,076 + IAI46_22380 0.73 +0.3 4,770,077 - IAI46_22380 0.73 -0.7 4,770,077 - IAI46_22380 0.73 +0.1 4,770,111 + IAI46_22380 0.76 +1.1 4,770,153 + IAI46_22380 0.80 +0.2 4,770,153 + IAI46_22380 0.80 +0.5 4,770,153 + IAI46_22380 0.80 +0.7 4,770,154 - IAI46_22380 0.80 +0.4 4,770,154 - IAI46_22380 0.80 +0.6 4,770,154 - IAI46_22380 0.80 +0.1 4,770,154 - IAI46_22380 0.80 -0.5 4,770,154 - IAI46_22380 0.80 +0.7 4,770,154 - IAI46_22380 0.80 +0.3 4,770,154 - IAI46_22380 0.80 -0.6 4,770,154 - IAI46_22380 0.80 +1.4 4,770,155 + IAI46_22380 0.80 -0.4 4,770,155 + IAI46_22380 0.80 -0.0 4,770,155 + IAI46_22380 0.80 +0.7 4,770,155 + IAI46_22380 0.80 +0.4 4,770,155 + IAI46_22380 0.80 +1.0 4,770,156 - IAI46_22380 0.80 -0.0 4,770,156 - IAI46_22380 0.80 +0.3 4,770,156 - IAI46_22380 0.80 -1.0 4,770,156 - IAI46_22380 0.80 -0.3 4,770,156 - IAI46_22380 0.80 +0.2 4,770,156 - IAI46_22380 0.80 +0.0 4,770,156 - IAI46_22380 0.80 +0.2 4,770,156 - IAI46_22380 0.80 -0.8 4,770,156 - IAI46_22380 0.80 +0.4 4,770,156 - IAI46_22380 0.80 -0.3 4,770,156 - IAI46_22380 0.80 -0.0 4,770,156 - IAI46_22380 0.80 +0.7 4,770,157 + IAI46_22380 0.80 +1.1 4,770,157 + IAI46_22380 0.80 +0.1 4,770,157 + IAI46_22380 0.80 -0.8 4,770,157 + IAI46_22380 0.80 -0.3 4,770,157 + IAI46_22380 0.80 +0.5 4,770,157 + IAI46_22380 0.80 +0.4 4,770,158 - IAI46_22380 0.80 -0.2 4,770,158 - IAI46_22380 0.80 +0.7 4,770,158 - IAI46_22380 0.80 +0.6 4,770,158 - IAI46_22380 0.80 +0.0 4,770,158 - IAI46_22380 0.80 +0.8 4,770,158 - IAI46_22380 0.80 +0.0 4,770,256 + IAI46_22380 0.89 +0.5 4,770,275 + -0.8 4,770,275 + +0.4 4,770,275 + -0.6 4,770,276 - +1.4 4,770,276 - +0.8 4,770,276 - -0.1 4,770,276 - -0.2 4,770,276 - -0.1 4,770,279 + +1.0 4,770,279 + +0.3 4,770,279 + +0.8 4,770,279 + +0.2 4,770,279 + -0.5 4,770,280 - +1.2 4,770,280 - +0.3 4,770,327 - -0.1 4,770,327 - +1.7 4,770,397 + -0.2 4,770,415 - +0.3 4,770,437 - +0.2 4,770,439 + -0.7 4,770,458 + +0.4 4,770,458 + -0.7 4,770,552 - +0.3 4,770,553 + -0.2 4,770,563 + +0.1 4,770,567 - +1.8 4,770,602 + -0.2 4,770,603 - +0.5 4,770,729 + IAI46_22385 0.29 -0.0 4,770,832 + IAI46_22385 0.54 -1.5 4,770,832 + IAI46_22385 0.54 -0.7 4,770,833 - IAI46_22385 0.55 -0.2 4,770,840 + IAI46_22385 0.56 +0.1 4,771,066 - +0.2 4,771,066 - +0.0 4,771,066 - +0.5 4,771,087 + +0.3 4,771,087 + -0.0 4,771,137 + +0.4 4,771,147 + -0.5 4,771,147 + +0.4 4,771,148 - +0.0 4,771,152 + +0.9 4,771,166 + -0.3 4,771,166 + +0.2 4,771,166 + +0.5 4,771,167 - +1.5 4,771,175 + +0.7 4,771,175 + -0.3 4,771,176 - +0.7 4,771,202 + +0.5 4,771,202 + -0.4 4,771,202 + -0.4 4,771,202 + +0.1 4,771,203 - -0.3 4,771,234 - +0.7 4,771,251 + -0.3
Or see this region's nucleotide sequence