Strain Fitness in Serratia liquefaciens MT49 around IAI46_17595

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17590 and IAI46_17595 are separated by 1 nucleotidesIAI46_17595 and IAI46_17600 are separated by 265 nucleotides IAI46_17590: IAI46_17590 - LacI family DNA-binding transcriptional regulator, at 3,707,245 to 3,708,228 _17590 IAI46_17595: IAI46_17595 - DUF1097 domain-containing protein, at 3,708,230 to 3,708,724 _17595 IAI46_17600: IAI46_17600 - MFS transporter, at 3,708,990 to 3,710,234 _17600 Position (kb) 3708 3709Strain fitness (log2 ratio) -2 -1 0 1at 3707.274 kb on + strandat 3707.275 kb on - strandat 3707.318 kb on - strandat 3707.516 kb on - strand, within IAI46_17590at 3707.536 kb on + strand, within IAI46_17590at 3707.536 kb on + strand, within IAI46_17590at 3707.536 kb on + strand, within IAI46_17590at 3707.536 kb on + strand, within IAI46_17590at 3707.542 kb on + strand, within IAI46_17590at 3707.542 kb on + strand, within IAI46_17590at 3707.543 kb on - strand, within IAI46_17590at 3707.543 kb on - strand, within IAI46_17590at 3707.543 kb on - strand, within IAI46_17590at 3707.569 kb on - strand, within IAI46_17590at 3707.588 kb on - strand, within IAI46_17590at 3707.626 kb on - strand, within IAI46_17590at 3707.626 kb on - strand, within IAI46_17590at 3707.626 kb on - strand, within IAI46_17590at 3707.644 kb on + strand, within IAI46_17590at 3707.644 kb on + strand, within IAI46_17590at 3707.836 kb on + strand, within IAI46_17590at 3707.945 kb on - strand, within IAI46_17590at 3707.966 kb on + strand, within IAI46_17590at 3707.966 kb on + strand, within IAI46_17590at 3707.967 kb on - strand, within IAI46_17590at 3707.967 kb on - strand, within IAI46_17590at 3707.967 kb on - strand, within IAI46_17590at 3707.999 kb on + strand, within IAI46_17590at 3708.108 kb on + strand, within IAI46_17590at 3708.162 kb on + strandat 3708.227 kb on - strandat 3708.330 kb on - strand, within IAI46_17595at 3708.481 kb on - strand, within IAI46_17595at 3708.610 kb on - strand, within IAI46_17595at 3708.610 kb on - strand, within IAI46_17595at 3708.616 kb on + strand, within IAI46_17595at 3708.655 kb on + strand, within IAI46_17595at 3708.725 kb on - strandat 3708.787 kb on - strandat 3708.864 kb on + strandat 3708.864 kb on + strandat 3709.033 kb on - strandat 3709.033 kb on - strandat 3709.135 kb on + strand, within IAI46_17600at 3709.136 kb on - strand, within IAI46_17600at 3709.143 kb on + strand, within IAI46_17600at 3709.144 kb on - strand, within IAI46_17600at 3709.148 kb on - strand, within IAI46_17600at 3709.382 kb on + strand, within IAI46_17600at 3709.382 kb on + strand, within IAI46_17600at 3709.382 kb on + strand, within IAI46_17600at 3709.383 kb on - strand, within IAI46_17600at 3709.402 kb on + strand, within IAI46_17600at 3709.403 kb on - strand, within IAI46_17600at 3709.413 kb on + strand, within IAI46_17600at 3709.414 kb on - strand, within IAI46_17600at 3709.414 kb on - strand, within IAI46_17600at 3709.414 kb on - strand, within IAI46_17600at 3709.418 kb on - strand, within IAI46_17600at 3709.424 kb on - strand, within IAI46_17600at 3709.485 kb on - strand, within IAI46_17600at 3709.617 kb on + strand, within IAI46_17600at 3709.689 kb on - strand, within IAI46_17600

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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3,707,274 + -0.9
3,707,275 - +0.9
3,707,318 - -0.7
3,707,516 - IAI46_17590 0.28 -0.2
3,707,536 + IAI46_17590 0.30 -0.1
3,707,536 + IAI46_17590 0.30 -0.5
3,707,536 + IAI46_17590 0.30 +0.1
3,707,536 + IAI46_17590 0.30 +0.8
3,707,542 + IAI46_17590 0.30 +0.1
3,707,542 + IAI46_17590 0.30 +0.1
3,707,543 - IAI46_17590 0.30 +0.8
3,707,543 - IAI46_17590 0.30 -0.4
3,707,543 - IAI46_17590 0.30 +0.3
3,707,569 - IAI46_17590 0.33 -0.6
3,707,588 - IAI46_17590 0.35 -1.1
3,707,626 - IAI46_17590 0.39 +1.5
3,707,626 - IAI46_17590 0.39 -0.4
3,707,626 - IAI46_17590 0.39 +0.6
3,707,644 + IAI46_17590 0.41 +0.1
3,707,644 + IAI46_17590 0.41 +0.8
3,707,836 + IAI46_17590 0.60 +0.7
3,707,945 - IAI46_17590 0.71 -0.1
3,707,966 + IAI46_17590 0.73 +1.1
3,707,966 + IAI46_17590 0.73 -0.8
3,707,967 - IAI46_17590 0.73 -0.7
3,707,967 - IAI46_17590 0.73 +0.5
3,707,967 - IAI46_17590 0.73 +0.9
3,707,999 + IAI46_17590 0.77 +0.4
3,708,108 + IAI46_17590 0.88 +0.7
3,708,162 + +0.6
3,708,227 - +1.0
3,708,330 - IAI46_17595 0.20 -0.7
3,708,481 - IAI46_17595 0.51 +0.4
3,708,610 - IAI46_17595 0.77 +1.2
3,708,610 - IAI46_17595 0.77 -1.8
3,708,616 + IAI46_17595 0.78 -0.5
3,708,655 + IAI46_17595 0.86 +1.1
3,708,725 - +0.0
3,708,787 - -0.4
3,708,864 + +0.7
3,708,864 + +1.4
3,709,033 - -0.4
3,709,033 - -0.6
3,709,135 + IAI46_17600 0.12 +0.3
3,709,136 - IAI46_17600 0.12 +0.5
3,709,143 + IAI46_17600 0.12 +0.9
3,709,144 - IAI46_17600 0.12 -0.1
3,709,148 - IAI46_17600 0.13 -0.3
3,709,382 + IAI46_17600 0.31 -0.6
3,709,382 + IAI46_17600 0.31 +0.3
3,709,382 + IAI46_17600 0.31 +1.4
3,709,383 - IAI46_17600 0.32 -0.3
3,709,402 + IAI46_17600 0.33 +0.4
3,709,403 - IAI46_17600 0.33 -0.1
3,709,413 + IAI46_17600 0.34 -0.8
3,709,414 - IAI46_17600 0.34 +0.7
3,709,414 - IAI46_17600 0.34 -1.5
3,709,414 - IAI46_17600 0.34 -0.1
3,709,418 - IAI46_17600 0.34 +0.8
3,709,424 - IAI46_17600 0.35 +0.0
3,709,485 - IAI46_17600 0.40 -0.2
3,709,617 + IAI46_17600 0.50 -1.1
3,709,689 - IAI46_17600 0.56 -0.2

Or see this region's nucleotide sequence