Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_16910 and IAI46_16915 are separated by 39 nucleotides IAI46_16915 and IAI46_16920 are separated by 356 nucleotides
IAI46_16910: IAI46_16910 - FadR family transcriptional regulator, at 3,545,632 to 3,546,348
_16910
IAI46_16915: IAI46_16915 - starvation-sensing protein RspA, at 3,546,388 to 3,547,641
_16915
IAI46_16920: IAI46_16920 - SDR family oxidoreductase, at 3,547,998 to 3,548,765
_16920
Position (kb)
3546
3547
3548 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3545.391 kb on + strand at 3545.529 kb on + strand at 3545.529 kb on + strand at 3545.529 kb on + strand at 3545.529 kb on + strand at 3545.529 kb on + strand at 3545.530 kb on - strand at 3545.530 kb on - strand at 3545.589 kb on + strand at 3545.589 kb on + strand at 3545.688 kb on - strand at 3545.727 kb on + strand, within IAI46_16910 at 3545.727 kb on + strand, within IAI46_16910 at 3545.782 kb on - strand, within IAI46_16910 at 3545.880 kb on - strand, within IAI46_16910 at 3545.985 kb on - strand, within IAI46_16910 at 3545.985 kb on - strand, within IAI46_16910 at 3546.148 kb on - strand, within IAI46_16910 at 3546.157 kb on + strand, within IAI46_16910 at 3546.157 kb on + strand, within IAI46_16910 at 3546.157 kb on + strand, within IAI46_16910 at 3546.158 kb on - strand, within IAI46_16910 at 3546.158 kb on - strand, within IAI46_16910 at 3546.161 kb on - strand, within IAI46_16910 at 3546.161 kb on - strand, within IAI46_16910 at 3546.161 kb on - strand, within IAI46_16910 at 3546.163 kb on + strand, within IAI46_16910 at 3546.163 kb on + strand, within IAI46_16910 at 3546.163 kb on + strand, within IAI46_16910 at 3546.163 kb on + strand, within IAI46_16910 at 3546.196 kb on - strand, within IAI46_16910 at 3546.234 kb on + strand, within IAI46_16910 at 3546.369 kb on + strand at 3546.370 kb on - strand at 3546.484 kb on - strand at 3546.488 kb on - strand at 3546.594 kb on + strand, within IAI46_16915 at 3546.701 kb on - strand, within IAI46_16915 at 3546.760 kb on - strand, within IAI46_16915 at 3546.760 kb on - strand, within IAI46_16915 at 3546.814 kb on + strand, within IAI46_16915 at 3546.814 kb on + strand, within IAI46_16915 at 3546.815 kb on - strand, within IAI46_16915 at 3546.815 kb on - strand, within IAI46_16915 at 3546.902 kb on + strand, within IAI46_16915 at 3546.981 kb on + strand, within IAI46_16915 at 3547.046 kb on + strand, within IAI46_16915 at 3547.065 kb on - strand, within IAI46_16915 at 3547.065 kb on - strand, within IAI46_16915 at 3547.077 kb on + strand, within IAI46_16915 at 3547.169 kb on + strand, within IAI46_16915 at 3547.170 kb on - strand, within IAI46_16915 at 3547.189 kb on + strand, within IAI46_16915 at 3547.189 kb on + strand, within IAI46_16915 at 3547.190 kb on - strand, within IAI46_16915 at 3547.194 kb on - strand, within IAI46_16915 at 3547.194 kb on - strand, within IAI46_16915 at 3547.194 kb on - strand, within IAI46_16915 at 3547.234 kb on + strand, within IAI46_16915 at 3547.234 kb on + strand, within IAI46_16915 at 3547.268 kb on + strand, within IAI46_16915 at 3547.311 kb on - strand, within IAI46_16915 at 3547.312 kb on + strand, within IAI46_16915 at 3547.313 kb on - strand, within IAI46_16915 at 3547.333 kb on - strand, within IAI46_16915 at 3547.432 kb on - strand, within IAI46_16915 at 3547.476 kb on + strand, within IAI46_16915 at 3547.477 kb on - strand, within IAI46_16915 at 3547.477 kb on - strand, within IAI46_16915 at 3547.477 kb on - strand, within IAI46_16915 at 3547.478 kb on + strand, within IAI46_16915 at 3547.478 kb on + strand, within IAI46_16915 at 3547.541 kb on + strand at 3547.541 kb on + strand at 3547.541 kb on + strand at 3547.542 kb on - strand at 3547.557 kb on + strand at 3547.570 kb on - strand at 3547.630 kb on + strand at 3547.630 kb on + strand at 3547.630 kb on + strand at 3547.630 kb on + strand at 3547.631 kb on - strand at 3547.631 kb on - strand at 3547.644 kb on + strand at 3547.695 kb on + strand at 3547.958 kb on + strand at 3547.959 kb on - strand at 3547.997 kb on + strand at 3547.997 kb on + strand at 3547.998 kb on - strand at 3547.998 kb on - strand at 3548.003 kb on + strand at 3548.295 kb on - strand, within IAI46_16920 at 3548.364 kb on - strand, within IAI46_16920 at 3548.364 kb on - strand, within IAI46_16920 at 3548.569 kb on - strand, within IAI46_16920 at 3548.569 kb on - strand, within IAI46_16920
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 3,545,391 + +0.0 3,545,529 + -0.6 3,545,529 + -0.9 3,545,529 + +0.2 3,545,529 + -0.4 3,545,529 + +0.4 3,545,530 - +0.4 3,545,530 - +0.2 3,545,589 + +1.2 3,545,589 + -0.3 3,545,688 - +0.9 3,545,727 + IAI46_16910 0.13 -0.3 3,545,727 + IAI46_16910 0.13 +0.0 3,545,782 - IAI46_16910 0.21 -0.6 3,545,880 - IAI46_16910 0.35 +0.2 3,545,985 - IAI46_16910 0.49 -0.5 3,545,985 - IAI46_16910 0.49 -0.2 3,546,148 - IAI46_16910 0.72 -1.2 3,546,157 + IAI46_16910 0.73 -0.4 3,546,157 + IAI46_16910 0.73 -0.4 3,546,157 + IAI46_16910 0.73 -0.2 3,546,158 - IAI46_16910 0.73 +0.6 3,546,158 - IAI46_16910 0.73 -1.9 3,546,161 - IAI46_16910 0.74 -1.6 3,546,161 - IAI46_16910 0.74 +0.2 3,546,161 - IAI46_16910 0.74 -0.2 3,546,163 + IAI46_16910 0.74 -0.9 3,546,163 + IAI46_16910 0.74 -0.7 3,546,163 + IAI46_16910 0.74 -0.4 3,546,163 + IAI46_16910 0.74 +0.6 3,546,196 - IAI46_16910 0.79 +0.3 3,546,234 + IAI46_16910 0.84 +0.1 3,546,369 + -0.1 3,546,370 - +1.0 3,546,484 - +0.5 3,546,488 - +1.1 3,546,594 + IAI46_16915 0.16 +0.3 3,546,701 - IAI46_16915 0.25 -0.3 3,546,760 - IAI46_16915 0.30 +0.5 3,546,760 - IAI46_16915 0.30 +0.7 3,546,814 + IAI46_16915 0.34 +0.9 3,546,814 + IAI46_16915 0.34 +0.6 3,546,815 - IAI46_16915 0.34 -2.5 3,546,815 - IAI46_16915 0.34 +0.4 3,546,902 + IAI46_16915 0.41 +1.4 3,546,981 + IAI46_16915 0.47 +0.9 3,547,046 + IAI46_16915 0.52 +0.7 3,547,065 - IAI46_16915 0.54 -1.1 3,547,065 - IAI46_16915 0.54 -0.5 3,547,077 + IAI46_16915 0.55 +0.5 3,547,169 + IAI46_16915 0.62 +0.6 3,547,170 - IAI46_16915 0.62 -0.3 3,547,189 + IAI46_16915 0.64 +1.2 3,547,189 + IAI46_16915 0.64 +1.1 3,547,190 - IAI46_16915 0.64 -0.3 3,547,194 - IAI46_16915 0.64 -1.7 3,547,194 - IAI46_16915 0.64 -0.5 3,547,194 - IAI46_16915 0.64 +0.1 3,547,234 + IAI46_16915 0.67 -0.6 3,547,234 + IAI46_16915 0.67 +0.4 3,547,268 + IAI46_16915 0.70 -0.2 3,547,311 - IAI46_16915 0.74 -1.0 3,547,312 + IAI46_16915 0.74 +0.2 3,547,313 - IAI46_16915 0.74 +0.7 3,547,333 - IAI46_16915 0.75 -0.3 3,547,432 - IAI46_16915 0.83 +0.2 3,547,476 + IAI46_16915 0.87 -1.9 3,547,477 - IAI46_16915 0.87 +0.9 3,547,477 - IAI46_16915 0.87 +0.6 3,547,477 - IAI46_16915 0.87 +0.1 3,547,478 + IAI46_16915 0.87 +0.9 3,547,478 + IAI46_16915 0.87 +0.2 3,547,541 + -0.1 3,547,541 + +1.3 3,547,541 + +0.5 3,547,542 - -0.4 3,547,557 + -0.7 3,547,570 - +0.2 3,547,630 + +0.0 3,547,630 + +1.8 3,547,630 + +0.7 3,547,630 + +0.3 3,547,631 - +0.5 3,547,631 - +1.0 3,547,644 + +0.6 3,547,695 + +0.0 3,547,958 + -0.3 3,547,959 - +0.5 3,547,997 + +1.3 3,547,997 + -0.1 3,547,998 - +0.6 3,547,998 - +0.5 3,548,003 + +1.2 3,548,295 - IAI46_16920 0.39 +1.5 3,548,364 - IAI46_16920 0.48 +0.7 3,548,364 - IAI46_16920 0.48 -0.3 3,548,569 - IAI46_16920 0.74 +0.1 3,548,569 - IAI46_16920 0.74 +0.0
Or see this region's nucleotide sequence