Strain Fitness in Serratia liquefaciens MT49 around IAI46_13145

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13140 and IAI46_13145 are separated by 163 nucleotidesIAI46_13145 and IAI46_13150 are separated by 156 nucleotides IAI46_13140: IAI46_13140 - polyphosphate kinase 2, at 2,803,258 to 2,804,172 _13140 IAI46_13145: IAI46_13145 - D-alanyl-D-alanine endopeptidase, at 2,804,336 to 2,805,169 _13145 IAI46_13150: IAI46_13150 - MsnO8 family LLM class oxidoreductase, at 2,805,326 to 2,806,309 _13150 Position (kb) 2804 2805 2806Strain fitness (log2 ratio) -1 0 1at 2803.504 kb on + strand, within IAI46_13140at 2803.505 kb on - strand, within IAI46_13140at 2803.617 kb on + strand, within IAI46_13140at 2803.627 kb on + strand, within IAI46_13140at 2803.639 kb on + strand, within IAI46_13140at 2803.640 kb on - strand, within IAI46_13140at 2803.640 kb on - strand, within IAI46_13140at 2803.642 kb on - strand, within IAI46_13140at 2803.817 kb on - strand, within IAI46_13140at 2804.052 kb on + strand, within IAI46_13140at 2804.053 kb on - strand, within IAI46_13140at 2804.122 kb on + strandat 2804.148 kb on + strandat 2804.148 kb on + strandat 2804.149 kb on - strandat 2804.149 kb on - strandat 2804.149 kb on - strandat 2804.149 kb on - strandat 2804.264 kb on - strandat 2804.323 kb on - strandat 2804.323 kb on - strandat 2804.891 kb on + strand, within IAI46_13145at 2805.266 kb on - strandat 2805.266 kb on - strandat 2805.289 kb on - strandat 2805.311 kb on + strandat 2805.332 kb on + strandat 2805.513 kb on - strand, within IAI46_13150at 2805.573 kb on - strand, within IAI46_13150at 2805.581 kb on + strand, within IAI46_13150at 2805.744 kb on + strand, within IAI46_13150

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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2,803,504 + IAI46_13140 0.27 +0.6
2,803,505 - IAI46_13140 0.27 +0.8
2,803,617 + IAI46_13140 0.39 +0.7
2,803,627 + IAI46_13140 0.40 +0.3
2,803,639 + IAI46_13140 0.42 -0.7
2,803,640 - IAI46_13140 0.42 +1.3
2,803,640 - IAI46_13140 0.42 +0.5
2,803,642 - IAI46_13140 0.42 +0.9
2,803,817 - IAI46_13140 0.61 +0.5
2,804,052 + IAI46_13140 0.87 +0.2
2,804,053 - IAI46_13140 0.87 -1.1
2,804,122 + -0.1
2,804,148 + +0.1
2,804,148 + +0.4
2,804,149 - -0.3
2,804,149 - +0.8
2,804,149 - -0.1
2,804,149 - +0.5
2,804,264 - +0.1
2,804,323 - -0.4
2,804,323 - -0.9
2,804,891 + IAI46_13145 0.67 -0.7
2,805,266 - +0.9
2,805,266 - -0.2
2,805,289 - +0.3
2,805,311 + +0.8
2,805,332 + -0.3
2,805,513 - IAI46_13150 0.19 +0.0
2,805,573 - IAI46_13150 0.25 +0.6
2,805,581 + IAI46_13150 0.26 +0.3
2,805,744 + IAI46_13150 0.42 -0.1

Or see this region's nucleotide sequence