Strain Fitness in Serratia liquefaciens MT49 around IAI46_12610

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12600 and IAI46_12605 overlap by 23 nucleotidesIAI46_12605 and IAI46_12610 are separated by 244 nucleotidesIAI46_12610 and IAI46_12615 are separated by 577 nucleotides IAI46_12600: IAI46_12600 - hypothetical protein, at 2,677,569 to 2,677,886 _12600 IAI46_12605: IAI46_12605 - nuclear transport factor 2 family protein, at 2,677,864 to 2,678,397 _12605 IAI46_12610: IAI46_12610 - alpha/beta hydrolase, at 2,678,642 to 2,679,472 _12610 IAI46_12615: IAI46_12615 - hypothetical protein, at 2,680,050 to 2,680,562 _12615 Position (kb) 2678 2679 2680Strain fitness (log2 ratio) -1 0 1at 2677.839 kb on + strand, within IAI46_12600at 2678.252 kb on + strand, within IAI46_12605at 2678.261 kb on - strand, within IAI46_12605at 2678.406 kb on - strandat 2678.499 kb on + strandat 2678.618 kb on + strandat 2678.653 kb on - strandat 2678.854 kb on + strand, within IAI46_12610at 2678.957 kb on + strand, within IAI46_12610at 2678.985 kb on + strand, within IAI46_12610at 2679.113 kb on + strand, within IAI46_12610at 2679.231 kb on - strand, within IAI46_12610at 2679.533 kb on + strandat 2679.792 kb on - strandat 2679.935 kb on + strandat 2679.935 kb on + strandat 2680.253 kb on + strand, within IAI46_12615at 2680.326 kb on + strand, within IAI46_12615

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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2,677,839 + IAI46_12600 0.85 +0.8
2,678,252 + IAI46_12605 0.73 +1.2
2,678,261 - IAI46_12605 0.74 -0.8
2,678,406 - +1.7
2,678,499 + -0.6
2,678,618 + -0.6
2,678,653 - -0.8
2,678,854 + IAI46_12610 0.26 +0.4
2,678,957 + IAI46_12610 0.38 -0.0
2,678,985 + IAI46_12610 0.41 -0.2
2,679,113 + IAI46_12610 0.57 +0.7
2,679,231 - IAI46_12610 0.71 +0.9
2,679,533 + +0.7
2,679,792 - +0.4
2,679,935 + +0.7
2,679,935 + +0.6
2,680,253 + IAI46_12615 0.40 +1.0
2,680,326 + IAI46_12615 0.54 +0.2

Or see this region's nucleotide sequence