Strain Fitness in Serratia liquefaciens MT49 around IAI46_11150

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11140 and IAI46_11145 are separated by 555 nucleotidesIAI46_11145 and IAI46_11150 are separated by 14 nucleotidesIAI46_11150 and IAI46_11155 are separated by 42 nucleotidesIAI46_11155 and IAI46_11160 overlap by 26 nucleotides IAI46_11140: IAI46_11140 - hypothetical protein, at 2,356,104 to 2,356,508 _11140 IAI46_11145: IAI46_11145 - Fe-S cluster assembly scaffold SufA, at 2,357,064 to 2,357,435 _11145 IAI46_11150: IAI46_11150 - Fe-S cluster assembly protein SufB, at 2,357,450 to 2,358,946 _11150 IAI46_11155: IAI46_11155 - Fe-S cluster assembly ATPase SufC, at 2,358,989 to 2,359,735 _11155 IAI46_11160: IAI46_11160 - Fe-S cluster assembly protein SufD, at 2,359,710 to 2,361,002 _11160 Position (kb) 2357 2358 2359Strain fitness (log2 ratio) -2 -1 0 1at 2356.460 kb on + strand, within IAI46_11140at 2356.460 kb on + strand, within IAI46_11140at 2356.634 kb on - strandat 2356.662 kb on + strandat 2356.841 kb on + strandat 2357.016 kb on + strandat 2357.016 kb on + strandat 2357.056 kb on + strandat 2357.063 kb on + strandat 2357.132 kb on + strand, within IAI46_11145at 2357.154 kb on - strand, within IAI46_11145at 2357.158 kb on + strand, within IAI46_11145at 2357.229 kb on + strand, within IAI46_11145at 2357.230 kb on - strand, within IAI46_11145at 2357.298 kb on + strand, within IAI46_11145at 2357.299 kb on - strand, within IAI46_11145at 2357.372 kb on - strand, within IAI46_11145at 2357.372 kb on - strand, within IAI46_11145at 2357.390 kb on + strand, within IAI46_11145at 2357.466 kb on + strandat 2357.512 kb on + strandat 2357.711 kb on + strand, within IAI46_11150at 2357.711 kb on + strand, within IAI46_11150at 2357.810 kb on + strand, within IAI46_11150at 2357.922 kb on - strand, within IAI46_11150at 2358.005 kb on + strand, within IAI46_11150at 2358.087 kb on - strand, within IAI46_11150at 2358.198 kb on - strand, within IAI46_11150at 2358.443 kb on + strand, within IAI46_11150at 2358.456 kb on + strand, within IAI46_11150at 2358.456 kb on + strand, within IAI46_11150at 2358.611 kb on - strand, within IAI46_11150at 2358.615 kb on - strand, within IAI46_11150at 2358.709 kb on + strand, within IAI46_11150at 2358.709 kb on + strand, within IAI46_11150at 2358.710 kb on - strand, within IAI46_11150at 2358.720 kb on - strand, within IAI46_11150at 2358.797 kb on + strandat 2358.797 kb on + strandat 2358.798 kb on - strandat 2358.993 kb on + strandat 2359.145 kb on + strand, within IAI46_11155at 2359.606 kb on + strand, within IAI46_11155at 2359.607 kb on - strand, within IAI46_11155at 2359.616 kb on + strand, within IAI46_11155at 2359.632 kb on - strand, within IAI46_11155at 2359.632 kb on - strand, within IAI46_11155at 2359.709 kb on + strandat 2359.759 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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2,356,460 + IAI46_11140 0.88 +1.0
2,356,460 + IAI46_11140 0.88 -0.4
2,356,634 - +0.3
2,356,662 + -0.9
2,356,841 + +1.3
2,357,016 + -0.3
2,357,016 + +0.0
2,357,056 + +0.0
2,357,063 + -0.4
2,357,132 + IAI46_11145 0.18 -0.6
2,357,154 - IAI46_11145 0.24 +0.1
2,357,158 + IAI46_11145 0.25 +0.4
2,357,229 + IAI46_11145 0.44 +0.7
2,357,230 - IAI46_11145 0.45 +1.3
2,357,298 + IAI46_11145 0.63 +0.1
2,357,299 - IAI46_11145 0.63 +1.1
2,357,372 - IAI46_11145 0.83 +0.5
2,357,372 - IAI46_11145 0.83 +0.2
2,357,390 + IAI46_11145 0.88 -0.6
2,357,466 + +0.3
2,357,512 + -0.4
2,357,711 + IAI46_11150 0.17 +0.7
2,357,711 + IAI46_11150 0.17 -0.7
2,357,810 + IAI46_11150 0.24 +0.4
2,357,922 - IAI46_11150 0.32 -0.3
2,358,005 + IAI46_11150 0.37 +0.3
2,358,087 - IAI46_11150 0.43 -0.5
2,358,198 - IAI46_11150 0.50 -0.7
2,358,443 + IAI46_11150 0.66 +0.2
2,358,456 + IAI46_11150 0.67 +0.1
2,358,456 + IAI46_11150 0.67 -0.3
2,358,611 - IAI46_11150 0.78 +1.1
2,358,615 - IAI46_11150 0.78 -0.5
2,358,709 + IAI46_11150 0.84 +0.5
2,358,709 + IAI46_11150 0.84 +0.2
2,358,710 - IAI46_11150 0.84 +0.2
2,358,720 - IAI46_11150 0.85 -1.3
2,358,797 + -0.7
2,358,797 + +1.4
2,358,798 - -2.7
2,358,993 + +0.3
2,359,145 + IAI46_11155 0.21 +0.2
2,359,606 + IAI46_11155 0.83 -0.6
2,359,607 - IAI46_11155 0.83 -0.6
2,359,616 + IAI46_11155 0.84 +0.6
2,359,632 - IAI46_11155 0.86 -0.5
2,359,632 - IAI46_11155 0.86 +0.3
2,359,709 + +0.5
2,359,759 - +0.3

Or see this region's nucleotide sequence