Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03985 and IAI46_03990 overlap by 1 nucleotides IAI46_03990 and IAI46_03995 are separated by 130 nucleotides IAI46_03995 and IAI46_04000 are separated by 578 nucleotides
IAI46_03985: IAI46_03985 - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 861,060 to 862,037
_03985
IAI46_03990: IAI46_03990 - polyphenol oxidase, at 862,037 to 862,768
_03990
IAI46_03995: IAI46_03995 - ATP-dependent chaperone ClpB, at 862,899 to 865,472
_03995
IAI46_04000: IAI46_04000 - 16S ribosomal RNA, at 866,051 to 867,595
_04000
Position (kb) 862
863
864
865
866 Strain fitness (log2 ratio) -2
-1
0
1
2 at 861.917 kb on - strand, within IAI46_03985 at 861.917 kb on - strand, within IAI46_03985 at 861.919 kb on - strand, within IAI46_03985 at 861.972 kb on - strand at 862.081 kb on - strand at 862.081 kb on - strand at 862.081 kb on - strand at 862.310 kb on + strand, within IAI46_03990 at 862.430 kb on - strand, within IAI46_03990 at 862.527 kb on + strand, within IAI46_03990 at 862.552 kb on + strand, within IAI46_03990 at 862.552 kb on + strand, within IAI46_03990 at 862.552 kb on + strand, within IAI46_03990 at 862.552 kb on + strand, within IAI46_03990 at 862.600 kb on + strand, within IAI46_03990 at 862.600 kb on + strand, within IAI46_03990 at 862.601 kb on - strand, within IAI46_03990 at 862.615 kb on + strand, within IAI46_03990 at 862.615 kb on + strand, within IAI46_03990 at 862.616 kb on - strand, within IAI46_03990 at 862.619 kb on + strand, within IAI46_03990 at 862.619 kb on + strand, within IAI46_03990 at 862.619 kb on + strand, within IAI46_03990 at 862.619 kb on + strand, within IAI46_03990 at 862.619 kb on + strand, within IAI46_03990 at 862.619 kb on + strand, within IAI46_03990 at 862.620 kb on - strand, within IAI46_03990 at 862.620 kb on - strand, within IAI46_03990 at 862.620 kb on - strand, within IAI46_03990 at 862.624 kb on - strand, within IAI46_03990 at 862.641 kb on + strand, within IAI46_03990 at 862.641 kb on + strand, within IAI46_03990 at 862.663 kb on + strand, within IAI46_03990 at 862.663 kb on + strand, within IAI46_03990 at 862.663 kb on + strand, within IAI46_03990 at 862.663 kb on + strand, within IAI46_03990 at 862.663 kb on + strand, within IAI46_03990 at 862.663 kb on + strand, within IAI46_03990 at 862.664 kb on - strand, within IAI46_03990 at 862.664 kb on - strand, within IAI46_03990 at 862.664 kb on - strand, within IAI46_03990 at 862.684 kb on + strand, within IAI46_03990 at 862.685 kb on - strand, within IAI46_03990 at 862.716 kb on - strand at 862.764 kb on + strand at 862.767 kb on - strand at 862.804 kb on + strand at 862.804 kb on + strand at 862.805 kb on - strand at 862.805 kb on - strand at 862.805 kb on - strand at 862.805 kb on - strand at 862.816 kb on + strand at 862.819 kb on - strand at 862.830 kb on - strand at 862.860 kb on + strand at 862.861 kb on - strand at 862.871 kb on - strand at 862.898 kb on + strand at 862.899 kb on - strand at 862.899 kb on - strand at 862.916 kb on + strand at 862.916 kb on + strand at 862.917 kb on - strand at 862.917 kb on - strand at 862.920 kb on - strand at 862.920 kb on - strand at 862.920 kb on - strand at 863.044 kb on + strand at 863.047 kb on + strand at 863.047 kb on + strand at 863.048 kb on - strand at 863.214 kb on - strand, within IAI46_03995 at 863.258 kb on + strand, within IAI46_03995 at 863.309 kb on + strand, within IAI46_03995 at 863.388 kb on + strand, within IAI46_03995 at 863.388 kb on + strand, within IAI46_03995 at 863.388 kb on + strand, within IAI46_03995 at 863.388 kb on + strand, within IAI46_03995 at 863.389 kb on - strand, within IAI46_03995 at 863.393 kb on + strand, within IAI46_03995 at 863.459 kb on - strand, within IAI46_03995 at 863.490 kb on - strand, within IAI46_03995 at 863.601 kb on - strand, within IAI46_03995 at 863.728 kb on + strand, within IAI46_03995 at 863.728 kb on + strand, within IAI46_03995 at 863.728 kb on + strand, within IAI46_03995 at 863.728 kb on + strand, within IAI46_03995 at 863.729 kb on - strand, within IAI46_03995 at 863.729 kb on - strand, within IAI46_03995 at 863.729 kb on - strand, within IAI46_03995 at 863.744 kb on + strand, within IAI46_03995 at 863.744 kb on + strand, within IAI46_03995 at 863.745 kb on - strand, within IAI46_03995 at 863.745 kb on - strand, within IAI46_03995 at 863.745 kb on - strand, within IAI46_03995 at 863.745 kb on - strand, within IAI46_03995 at 863.745 kb on - strand, within IAI46_03995 at 863.790 kb on - strand, within IAI46_03995 at 863.790 kb on - strand, within IAI46_03995 at 863.853 kb on + strand, within IAI46_03995 at 863.862 kb on + strand, within IAI46_03995 at 863.863 kb on - strand, within IAI46_03995 at 863.863 kb on - strand, within IAI46_03995 at 863.863 kb on - strand, within IAI46_03995 at 863.863 kb on - strand, within IAI46_03995 at 863.864 kb on + strand, within IAI46_03995 at 863.864 kb on + strand, within IAI46_03995 at 863.864 kb on + strand, within IAI46_03995 at 863.866 kb on + strand, within IAI46_03995 at 863.866 kb on + strand, within IAI46_03995 at 863.866 kb on + strand, within IAI46_03995 at 863.867 kb on - strand, within IAI46_03995 at 863.867 kb on - strand, within IAI46_03995 at 863.867 kb on - strand, within IAI46_03995 at 863.867 kb on - strand, within IAI46_03995 at 863.867 kb on - strand, within IAI46_03995 at 863.942 kb on + strand, within IAI46_03995 at 863.942 kb on + strand, within IAI46_03995 at 863.943 kb on - strand, within IAI46_03995 at 863.968 kb on - strand, within IAI46_03995 at 864.037 kb on - strand, within IAI46_03995 at 864.037 kb on - strand, within IAI46_03995 at 864.038 kb on + strand, within IAI46_03995 at 864.188 kb on + strand, within IAI46_03995 at 864.321 kb on - strand, within IAI46_03995 at 864.405 kb on + strand, within IAI46_03995 at 864.483 kb on - strand, within IAI46_03995 at 864.578 kb on - strand, within IAI46_03995 at 864.689 kb on + strand, within IAI46_03995 at 864.729 kb on - strand, within IAI46_03995 at 864.729 kb on - strand, within IAI46_03995 at 864.743 kb on + strand, within IAI46_03995 at 864.743 kb on + strand, within IAI46_03995 at 864.782 kb on + strand, within IAI46_03995 at 864.783 kb on - strand, within IAI46_03995 at 864.783 kb on - strand, within IAI46_03995 at 864.797 kb on + strand, within IAI46_03995 at 864.855 kb on + strand, within IAI46_03995 at 864.865 kb on - strand, within IAI46_03995 at 864.865 kb on - strand, within IAI46_03995 at 864.865 kb on - strand, within IAI46_03995 at 864.909 kb on + strand, within IAI46_03995 at 864.909 kb on + strand, within IAI46_03995 at 864.976 kb on + strand, within IAI46_03995 at 864.976 kb on + strand, within IAI46_03995 at 864.976 kb on + strand, within IAI46_03995 at 865.098 kb on + strand, within IAI46_03995 at 865.098 kb on + strand, within IAI46_03995 at 865.098 kb on + strand, within IAI46_03995 at 865.098 kb on + strand, within IAI46_03995 at 865.099 kb on - strand, within IAI46_03995 at 865.100 kb on + strand, within IAI46_03995 at 865.132 kb on + strand, within IAI46_03995 at 865.166 kb on + strand, within IAI46_03995 at 865.168 kb on + strand, within IAI46_03995 at 865.168 kb on + strand, within IAI46_03995 at 865.168 kb on + strand, within IAI46_03995 at 865.169 kb on - strand, within IAI46_03995 at 865.169 kb on - strand, within IAI46_03995 at 865.169 kb on - strand, within IAI46_03995 at 865.169 kb on - strand, within IAI46_03995 at 865.180 kb on + strand, within IAI46_03995 at 865.181 kb on - strand, within IAI46_03995 at 865.181 kb on - strand, within IAI46_03995 at 865.246 kb on - strand at 865.246 kb on - strand at 865.246 kb on - strand at 865.246 kb on - strand at 865.246 kb on - strand at 865.270 kb on - strand at 865.280 kb on + strand at 865.280 kb on + strand at 865.281 kb on - strand at 865.332 kb on + strand at 865.333 kb on - strand at 865.358 kb on + strand at 865.358 kb on + strand at 865.359 kb on - strand at 865.359 kb on - strand at 865.423 kb on + strand at 865.455 kb on - strand at 865.477 kb on + strand at 865.478 kb on - strand at 865.481 kb on + strand at 865.481 kb on + strand at 865.481 kb on + strand at 865.482 kb on - strand at 865.482 kb on - strand at 865.482 kb on - strand at 865.482 kb on - strand at 865.484 kb on + strand at 865.485 kb on - strand at 865.485 kb on - strand at 865.488 kb on + strand at 865.488 kb on + strand at 865.488 kb on + strand at 865.488 kb on + strand at 865.488 kb on + strand at 865.489 kb on - strand at 865.489 kb on - strand at 865.489 kb on - strand at 865.489 kb on - strand at 865.489 kb on - strand at 865.489 kb on - strand at 865.489 kb on - strand at 865.491 kb on - strand at 865.491 kb on - strand at 865.491 kb on - strand at 865.491 kb on - strand at 865.492 kb on + strand at 865.493 kb on - strand at 865.493 kb on - strand at 865.493 kb on - strand at 865.493 kb on - strand at 865.554 kb on + strand at 865.555 kb on - strand at 865.581 kb on - strand at 865.603 kb on + strand at 865.603 kb on + strand at 865.603 kb on + strand at 865.604 kb on - strand at 865.612 kb on + strand at 865.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 861,917 - IAI46_03985 0.88 -1.1 861,917 - IAI46_03985 0.88 -1.8 861,919 - IAI46_03985 0.88 -0.4 861,972 - -1.1 862,081 - +0.0 862,081 - +0.6 862,081 - -0.1 862,310 + IAI46_03990 0.37 +1.1 862,430 - IAI46_03990 0.54 -0.4 862,527 + IAI46_03990 0.67 +0.3 862,552 + IAI46_03990 0.70 +0.1 862,552 + IAI46_03990 0.70 +0.2 862,552 + IAI46_03990 0.70 -0.8 862,552 + IAI46_03990 0.70 -0.2 862,600 + IAI46_03990 0.77 +0.3 862,600 + IAI46_03990 0.77 -0.8 862,601 - IAI46_03990 0.77 +0.0 862,615 + IAI46_03990 0.79 -0.9 862,615 + IAI46_03990 0.79 -0.2 862,616 - IAI46_03990 0.79 +0.1 862,619 + IAI46_03990 0.80 +1.1 862,619 + IAI46_03990 0.80 +0.7 862,619 + IAI46_03990 0.80 -0.9 862,619 + IAI46_03990 0.80 +0.1 862,619 + IAI46_03990 0.80 +0.1 862,619 + IAI46_03990 0.80 +0.9 862,620 - IAI46_03990 0.80 -0.3 862,620 - IAI46_03990 0.80 -0.3 862,620 - IAI46_03990 0.80 -0.1 862,624 - IAI46_03990 0.80 +0.1 862,641 + IAI46_03990 0.83 +0.2 862,641 + IAI46_03990 0.83 -1.4 862,663 + IAI46_03990 0.86 +1.1 862,663 + IAI46_03990 0.86 -0.6 862,663 + IAI46_03990 0.86 +0.1 862,663 + IAI46_03990 0.86 -1.1 862,663 + IAI46_03990 0.86 +0.2 862,663 + IAI46_03990 0.86 -1.1 862,664 - IAI46_03990 0.86 -0.9 862,664 - IAI46_03990 0.86 -0.3 862,664 - IAI46_03990 0.86 -0.3 862,684 + IAI46_03990 0.88 -0.4 862,685 - IAI46_03990 0.89 +1.4 862,716 - +0.1 862,764 + -0.1 862,767 - +0.5 862,804 + -0.3 862,804 + +0.1 862,805 - +0.3 862,805 - -0.1 862,805 - +0.1 862,805 - +0.6 862,816 + -0.2 862,819 - +0.9 862,830 - -0.2 862,860 + -0.1 862,861 - -0.9 862,871 - +0.3 862,898 + -0.6 862,899 - +0.0 862,899 - +0.4 862,916 + -0.5 862,916 + +0.1 862,917 - +0.8 862,917 - -0.0 862,920 - -0.3 862,920 - +0.7 862,920 - +0.0 863,044 + +1.2 863,047 + +0.5 863,047 + +0.1 863,048 - +0.4 863,214 - IAI46_03995 0.12 +0.7 863,258 + IAI46_03995 0.14 +0.2 863,309 + IAI46_03995 0.16 +0.8 863,388 + IAI46_03995 0.19 -0.4 863,388 + IAI46_03995 0.19 +0.9 863,388 + IAI46_03995 0.19 -0.1 863,388 + IAI46_03995 0.19 +1.1 863,389 - IAI46_03995 0.19 -0.4 863,393 + IAI46_03995 0.19 -0.4 863,459 - IAI46_03995 0.22 -0.4 863,490 - IAI46_03995 0.23 +1.0 863,601 - IAI46_03995 0.27 -1.2 863,728 + IAI46_03995 0.32 +0.6 863,728 + IAI46_03995 0.32 +0.6 863,728 + IAI46_03995 0.32 -0.2 863,728 + IAI46_03995 0.32 +0.5 863,729 - IAI46_03995 0.32 -1.9 863,729 - IAI46_03995 0.32 +1.8 863,729 - IAI46_03995 0.32 -1.0 863,744 + IAI46_03995 0.33 -1.0 863,744 + IAI46_03995 0.33 +0.1 863,745 - IAI46_03995 0.33 +0.1 863,745 - IAI46_03995 0.33 +1.8 863,745 - IAI46_03995 0.33 +0.9 863,745 - IAI46_03995 0.33 -0.1 863,745 - IAI46_03995 0.33 -0.0 863,790 - IAI46_03995 0.35 +0.3 863,790 - IAI46_03995 0.35 +0.7 863,853 + IAI46_03995 0.37 +0.0 863,862 + IAI46_03995 0.37 +0.2 863,863 - IAI46_03995 0.37 +0.0 863,863 - IAI46_03995 0.37 +0.5 863,863 - IAI46_03995 0.37 +0.9 863,863 - IAI46_03995 0.37 -2.6 863,864 + IAI46_03995 0.37 +0.2 863,864 + IAI46_03995 0.37 -0.3 863,864 + IAI46_03995 0.37 -1.5 863,866 + IAI46_03995 0.38 -0.1 863,866 + IAI46_03995 0.38 +0.1 863,866 + IAI46_03995 0.38 +1.0 863,867 - IAI46_03995 0.38 +0.4 863,867 - IAI46_03995 0.38 +0.3 863,867 - IAI46_03995 0.38 +0.1 863,867 - IAI46_03995 0.38 +0.4 863,867 - IAI46_03995 0.38 +0.2 863,942 + IAI46_03995 0.41 -0.1 863,942 + IAI46_03995 0.41 +0.5 863,943 - IAI46_03995 0.41 +0.2 863,968 - IAI46_03995 0.42 +1.1 864,037 - IAI46_03995 0.44 +0.2 864,037 - IAI46_03995 0.44 +0.8 864,038 + IAI46_03995 0.44 -0.5 864,188 + IAI46_03995 0.50 +0.4 864,321 - IAI46_03995 0.55 +0.9 864,405 + IAI46_03995 0.59 +1.5 864,483 - IAI46_03995 0.62 -0.2 864,578 - IAI46_03995 0.65 +0.4 864,689 + IAI46_03995 0.70 +0.1 864,729 - IAI46_03995 0.71 +0.2 864,729 - IAI46_03995 0.71 -0.0 864,743 + IAI46_03995 0.72 +0.0 864,743 + IAI46_03995 0.72 +0.1 864,782 + IAI46_03995 0.73 -0.1 864,783 - IAI46_03995 0.73 -1.4 864,783 - IAI46_03995 0.73 +0.6 864,797 + IAI46_03995 0.74 -0.4 864,855 + IAI46_03995 0.76 +0.1 864,865 - IAI46_03995 0.76 -0.0 864,865 - IAI46_03995 0.76 +0.6 864,865 - IAI46_03995 0.76 +0.2 864,909 + IAI46_03995 0.78 +1.2 864,909 + IAI46_03995 0.78 +0.1 864,976 + IAI46_03995 0.81 -0.3 864,976 + IAI46_03995 0.81 +0.6 864,976 + IAI46_03995 0.81 +0.4 865,098 + IAI46_03995 0.85 +0.8 865,098 + IAI46_03995 0.85 +0.1 865,098 + IAI46_03995 0.85 +0.3 865,098 + IAI46_03995 0.85 -0.6 865,099 - IAI46_03995 0.85 +0.4 865,100 + IAI46_03995 0.86 +0.5 865,132 + IAI46_03995 0.87 +0.3 865,166 + IAI46_03995 0.88 +1.1 865,168 + IAI46_03995 0.88 +0.8 865,168 + IAI46_03995 0.88 -0.9 865,168 + IAI46_03995 0.88 +0.3 865,169 - IAI46_03995 0.88 -0.1 865,169 - IAI46_03995 0.88 -0.1 865,169 - IAI46_03995 0.88 -2.1 865,169 - IAI46_03995 0.88 +0.8 865,180 + IAI46_03995 0.89 +0.3 865,181 - IAI46_03995 0.89 +0.4 865,181 - IAI46_03995 0.89 -1.1 865,246 - -0.9 865,246 - +0.7 865,246 - +0.2 865,246 - -1.5 865,246 - -0.6 865,270 - +0.8 865,280 + +0.5 865,280 + -0.9 865,281 - +1.1 865,332 + -1.5 865,333 - +0.6 865,358 + -0.3 865,358 + -0.9 865,359 - -0.1 865,359 - +0.9 865,423 + +0.6 865,455 - +0.6 865,477 + -0.3 865,478 - -0.4 865,481 + -1.1 865,481 + +0.1 865,481 + -0.3 865,482 - -0.2 865,482 - +0.1 865,482 - +0.8 865,482 - +0.6 865,484 + -0.1 865,485 - -0.6 865,485 - +0.0 865,488 + +0.0 865,488 + +0.9 865,488 + +0.2 865,488 + -0.6 865,488 + +0.1 865,489 - +0.7 865,489 - -0.2 865,489 - +0.5 865,489 - +0.0 865,489 - +0.4 865,489 - -0.3 865,489 - +0.5 865,491 - -0.1 865,491 - +0.1 865,491 - +0.5 865,491 - -0.7 865,492 + +0.1 865,493 - +1.1 865,493 - -2.3 865,493 - +1.1 865,493 - +0.0 865,554 + +0.0 865,555 - +0.1 865,581 - -0.4 865,603 + -0.2 865,603 + +0.7 865,603 + +0.6 865,604 - +1.7 865,612 + +0.5 865,624 - +1.2
Or see this region's nucleotide sequence