Strain Fitness in Serratia liquefaciens MT49 around IAI46_03780

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03770 and IAI46_03775 are separated by 107 nucleotidesIAI46_03775 and IAI46_03780 overlap by 7 nucleotidesIAI46_03780 and IAI46_03785 are separated by 325 nucleotides IAI46_03770: IAI46_03770 - acyltransferase, at 819,644 to 820,924 _03770 IAI46_03775: IAI46_03775 - 5'/3'-nucleotidase SurE, at 821,032 to 821,793 _03775 IAI46_03780: IAI46_03780 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 821,787 to 822,413 _03780 IAI46_03785: IAI46_03785 - murein hydrolase activator NlpD, at 822,739 to 823,731 _03785 Position (kb) 821 822 823Strain fitness (log2 ratio) -2 -1 0 1 2at 820.810 kb on + strandat 820.925 kb on - strandat 820.927 kb on + strandat 820.928 kb on - strandat 820.928 kb on - strandat 820.938 kb on + strandat 820.969 kb on + strandat 820.969 kb on + strandat 820.973 kb on + strandat 820.974 kb on - strandat 820.974 kb on - strandat 821.012 kb on + strandat 821.031 kb on + strandat 821.219 kb on + strand, within IAI46_03775at 821.219 kb on + strand, within IAI46_03775at 821.246 kb on + strand, within IAI46_03775at 821.246 kb on + strand, within IAI46_03775at 821.246 kb on + strand, within IAI46_03775at 821.249 kb on - strand, within IAI46_03775at 821.339 kb on - strand, within IAI46_03775at 821.422 kb on + strand, within IAI46_03775at 821.422 kb on + strand, within IAI46_03775at 821.423 kb on - strand, within IAI46_03775at 821.423 kb on - strand, within IAI46_03775at 821.502 kb on + strand, within IAI46_03775at 821.503 kb on - strand, within IAI46_03775at 821.534 kb on + strand, within IAI46_03775at 821.535 kb on - strand, within IAI46_03775at 821.681 kb on + strand, within IAI46_03775at 821.692 kb on + strand, within IAI46_03775at 821.692 kb on + strand, within IAI46_03775at 821.692 kb on + strand, within IAI46_03775at 821.692 kb on + strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.704 kb on - strand, within IAI46_03775at 821.732 kb on - strandat 821.732 kb on - strandat 821.747 kb on + strandat 821.751 kb on - strandat 821.801 kb on + strandat 821.970 kb on + strand, within IAI46_03780at 821.970 kb on + strand, within IAI46_03780at 821.970 kb on + strand, within IAI46_03780at 821.970 kb on + strand, within IAI46_03780at 821.970 kb on + strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.971 kb on - strand, within IAI46_03780at 821.972 kb on + strand, within IAI46_03780at 821.972 kb on + strand, within IAI46_03780at 821.973 kb on - strand, within IAI46_03780at 821.973 kb on - strand, within IAI46_03780at 822.061 kb on + strand, within IAI46_03780at 822.101 kb on + strand, within IAI46_03780at 822.155 kb on + strand, within IAI46_03780at 822.155 kb on + strand, within IAI46_03780at 822.156 kb on - strand, within IAI46_03780at 822.156 kb on - strand, within IAI46_03780at 822.164 kb on + strand, within IAI46_03780at 822.221 kb on + strand, within IAI46_03780at 822.222 kb on - strand, within IAI46_03780at 822.329 kb on + strand, within IAI46_03780at 822.330 kb on - strand, within IAI46_03780at 822.330 kb on - strand, within IAI46_03780at 822.330 kb on - strand, within IAI46_03780at 822.480 kb on - strandat 822.507 kb on - strandat 822.533 kb on + strandat 822.533 kb on + strandat 822.534 kb on - strandat 822.534 kb on - strandat 822.636 kb on + strandat 822.636 kb on + strandat 822.636 kb on + strandat 822.637 kb on - strandat 822.644 kb on + strandat 822.666 kb on + strandat 822.666 kb on + strandat 822.667 kb on - strandat 822.673 kb on + strandat 822.674 kb on - strandat 822.690 kb on - strandat 822.690 kb on - strandat 822.691 kb on + strandat 822.691 kb on + strandat 822.700 kb on + strandat 822.701 kb on - strandat 822.744 kb on + strandat 822.744 kb on + strandat 822.745 kb on - strandat 822.749 kb on + strandat 822.749 kb on + strandat 822.768 kb on + strandat 822.768 kb on + strandat 822.769 kb on - strandat 822.776 kb on + strandat 822.777 kb on - strandat 822.798 kb on + strandat 822.798 kb on + strandat 822.799 kb on - strandat 822.825 kb on + strandat 822.825 kb on + strandat 822.910 kb on + strand, within IAI46_03785at 822.922 kb on + strand, within IAI46_03785at 822.923 kb on - strand, within IAI46_03785at 822.924 kb on + strand, within IAI46_03785at 822.924 kb on + strand, within IAI46_03785at 822.924 kb on + strand, within IAI46_03785at 822.925 kb on - strand, within IAI46_03785at 822.946 kb on + strand, within IAI46_03785at 822.947 kb on - strand, within IAI46_03785at 822.947 kb on - strand, within IAI46_03785at 822.955 kb on - strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.958 kb on - strand, within IAI46_03785at 822.958 kb on - strand, within IAI46_03785at 822.958 kb on - strand, within IAI46_03785at 822.958 kb on - strand, within IAI46_03785at 822.961 kb on + strand, within IAI46_03785at 822.961 kb on + strand, within IAI46_03785at 822.962 kb on - strand, within IAI46_03785at 822.962 kb on - strand, within IAI46_03785at 822.962 kb on - strand, within IAI46_03785at 822.962 kb on - strand, within IAI46_03785at 822.963 kb on + strand, within IAI46_03785at 823.039 kb on - strand, within IAI46_03785at 823.044 kb on + strand, within IAI46_03785at 823.045 kb on - strand, within IAI46_03785at 823.057 kb on + strand, within IAI46_03785at 823.058 kb on - strand, within IAI46_03785at 823.092 kb on + strand, within IAI46_03785at 823.159 kb on - strand, within IAI46_03785at 823.159 kb on - strand, within IAI46_03785at 823.219 kb on + strand, within IAI46_03785at 823.252 kb on - strand, within IAI46_03785at 823.260 kb on - strand, within IAI46_03785at 823.287 kb on + strand, within IAI46_03785at 823.287 kb on + strand, within IAI46_03785at 823.361 kb on + strand, within IAI46_03785at 823.361 kb on + strand, within IAI46_03785at 823.365 kb on + strand, within IAI46_03785at 823.396 kb on - strand, within IAI46_03785at 823.396 kb on - strand, within IAI46_03785at 823.396 kb on - strand, within IAI46_03785at 823.402 kb on - strand, within IAI46_03785

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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820,810 + -0.7
820,925 - -2.3
820,927 + +0.1
820,928 - +0.8
820,928 - -0.0
820,938 + -0.0
820,969 + +0.8
820,969 + -0.1
820,973 + -0.2
820,974 - +0.8
820,974 - +0.2
821,012 + +1.5
821,031 + -1.4
821,219 + IAI46_03775 0.25 -0.2
821,219 + IAI46_03775 0.25 +0.3
821,246 + IAI46_03775 0.28 -0.1
821,246 + IAI46_03775 0.28 +0.9
821,246 + IAI46_03775 0.28 -0.6
821,249 - IAI46_03775 0.28 -0.1
821,339 - IAI46_03775 0.40 +0.0
821,422 + IAI46_03775 0.51 -0.1
821,422 + IAI46_03775 0.51 +1.0
821,423 - IAI46_03775 0.51 +0.9
821,423 - IAI46_03775 0.51 +0.8
821,502 + IAI46_03775 0.62 +0.5
821,503 - IAI46_03775 0.62 +0.1
821,534 + IAI46_03775 0.66 +1.8
821,535 - IAI46_03775 0.66 -1.2
821,681 + IAI46_03775 0.85 -0.8
821,692 + IAI46_03775 0.87 -0.3
821,692 + IAI46_03775 0.87 -0.2
821,692 + IAI46_03775 0.87 +0.3
821,692 + IAI46_03775 0.87 -0.8
821,693 - IAI46_03775 0.87 -0.1
821,693 - IAI46_03775 0.87 -0.3
821,693 - IAI46_03775 0.87 +0.3
821,693 - IAI46_03775 0.87 -0.5
821,693 - IAI46_03775 0.87 +0.3
821,704 - IAI46_03775 0.88 -0.4
821,732 - -0.5
821,732 - -0.5
821,747 + +0.0
821,751 - +0.2
821,801 + -0.6
821,970 + IAI46_03780 0.29 -0.1
821,970 + IAI46_03780 0.29 +0.4
821,970 + IAI46_03780 0.29 -0.2
821,970 + IAI46_03780 0.29 -0.2
821,970 + IAI46_03780 0.29 +0.6
821,971 - IAI46_03780 0.29 +0.7
821,971 - IAI46_03780 0.29 +0.7
821,971 - IAI46_03780 0.29 -0.4
821,971 - IAI46_03780 0.29 +0.5
821,971 - IAI46_03780 0.29 -0.5
821,972 + IAI46_03780 0.30 +0.9
821,972 + IAI46_03780 0.30 -0.4
821,973 - IAI46_03780 0.30 +0.2
821,973 - IAI46_03780 0.30 +0.2
822,061 + IAI46_03780 0.44 +0.1
822,101 + IAI46_03780 0.50 -0.2
822,155 + IAI46_03780 0.59 -0.8
822,155 + IAI46_03780 0.59 -0.2
822,156 - IAI46_03780 0.59 +0.4
822,156 - IAI46_03780 0.59 +0.4
822,164 + IAI46_03780 0.60 +0.8
822,221 + IAI46_03780 0.69 -0.8
822,222 - IAI46_03780 0.69 +1.2
822,329 + IAI46_03780 0.86 +0.3
822,330 - IAI46_03780 0.87 +0.5
822,330 - IAI46_03780 0.87 +0.4
822,330 - IAI46_03780 0.87 +1.2
822,480 - +0.6
822,507 - -0.0
822,533 + -0.0
822,533 + -0.8
822,534 - -0.3
822,534 - +0.3
822,636 + +1.1
822,636 + +0.2
822,636 + -0.2
822,637 - -1.2
822,644 + +0.3
822,666 + +0.1
822,666 + +0.3
822,667 - +0.7
822,673 + -0.3
822,674 - +1.1
822,690 - -0.8
822,690 - -0.8
822,691 + +0.1
822,691 + +0.6
822,700 + -0.5
822,701 - +0.1
822,744 + -0.5
822,744 + +2.1
822,745 - -1.9
822,749 + -0.2
822,749 + +0.9
822,768 + +1.0
822,768 + +0.4
822,769 - +0.4
822,776 + +0.4
822,777 - -1.2
822,798 + -1.3
822,798 + -0.1
822,799 - -0.2
822,825 + -0.2
822,825 + -0.2
822,910 + IAI46_03785 0.17 +0.2
822,922 + IAI46_03785 0.18 +0.4
822,923 - IAI46_03785 0.19 -0.2
822,924 + IAI46_03785 0.19 +0.9
822,924 + IAI46_03785 0.19 +0.2
822,924 + IAI46_03785 0.19 +0.9
822,925 - IAI46_03785 0.19 -1.2
822,946 + IAI46_03785 0.21 +0.3
822,947 - IAI46_03785 0.21 +0.2
822,947 - IAI46_03785 0.21 -0.1
822,955 - IAI46_03785 0.22 +1.1
822,957 + IAI46_03785 0.22 -0.3
822,957 + IAI46_03785 0.22 +0.2
822,957 + IAI46_03785 0.22 +0.0
822,957 + IAI46_03785 0.22 +0.3
822,957 + IAI46_03785 0.22 +1.1
822,957 + IAI46_03785 0.22 +0.0
822,958 - IAI46_03785 0.22 +0.3
822,958 - IAI46_03785 0.22 +0.1
822,958 - IAI46_03785 0.22 +0.4
822,958 - IAI46_03785 0.22 -0.3
822,961 + IAI46_03785 0.22 +0.6
822,961 + IAI46_03785 0.22 -0.0
822,962 - IAI46_03785 0.22 +0.4
822,962 - IAI46_03785 0.22 +0.2
822,962 - IAI46_03785 0.22 -0.2
822,962 - IAI46_03785 0.22 +1.0
822,963 + IAI46_03785 0.23 +0.1
823,039 - IAI46_03785 0.30 +1.4
823,044 + IAI46_03785 0.31 -0.5
823,045 - IAI46_03785 0.31 +0.6
823,057 + IAI46_03785 0.32 +0.8
823,058 - IAI46_03785 0.32 +0.2
823,092 + IAI46_03785 0.36 +1.1
823,159 - IAI46_03785 0.42 -0.7
823,159 - IAI46_03785 0.42 -0.5
823,219 + IAI46_03785 0.48 +0.3
823,252 - IAI46_03785 0.52 -0.0
823,260 - IAI46_03785 0.52 +0.2
823,287 + IAI46_03785 0.55 +1.1
823,287 + IAI46_03785 0.55 +1.5
823,361 + IAI46_03785 0.63 +0.5
823,361 + IAI46_03785 0.63 -0.4
823,365 + IAI46_03785 0.63 +0.9
823,396 - IAI46_03785 0.66 +1.6
823,396 - IAI46_03785 0.66 +1.6
823,396 - IAI46_03785 0.66 +0.5
823,402 - IAI46_03785 0.67 +1.4

Or see this region's nucleotide sequence