Strain Fitness in Serratia liquefaciens MT49 around IAI46_02740

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02735 and IAI46_02740 are separated by 37 nucleotidesIAI46_02740 and IAI46_02745 are separated by 51 nucleotidesIAI46_02745 and IAI46_02750 are separated by 10 nucleotides IAI46_02735: IAI46_02735 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 588,956 to 590,410 _02735 IAI46_02740: IAI46_02740 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 590,448 to 591,521 _02740 IAI46_02745: IAI46_02745 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 591,573 to 591,959 _02745 IAI46_02750: IAI46_02750 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 591,970 to 592,773 _02750 Position (kb) 590 591 592Strain fitness (log2 ratio) -2 -1 0 1 2at 589.597 kb on + strand, within IAI46_02735at 589.597 kb on + strand, within IAI46_02735at 589.597 kb on + strand, within IAI46_02735at 589.598 kb on - strand, within IAI46_02735at 589.598 kb on - strand, within IAI46_02735at 589.810 kb on + strand, within IAI46_02735at 589.950 kb on - strand, within IAI46_02735at 589.950 kb on - strand, within IAI46_02735at 589.950 kb on - strand, within IAI46_02735at 590.165 kb on + strand, within IAI46_02735at 590.165 kb on + strand, within IAI46_02735at 590.180 kb on + strand, within IAI46_02735at 590.180 kb on + strand, within IAI46_02735at 590.181 kb on - strand, within IAI46_02735at 590.181 kb on - strand, within IAI46_02735at 590.228 kb on - strand, within IAI46_02735at 590.426 kb on - strandat 590.426 kb on - strandat 590.463 kb on - strandat 590.505 kb on + strandat 590.505 kb on + strandat 590.505 kb on + strandat 590.506 kb on - strandat 590.506 kb on - strandat 590.531 kb on + strandat 590.532 kb on - strandat 590.550 kb on + strandat 590.601 kb on + strand, within IAI46_02740at 590.602 kb on - strand, within IAI46_02740at 590.602 kb on - strand, within IAI46_02740at 590.602 kb on - strand, within IAI46_02740at 590.624 kb on + strand, within IAI46_02740at 590.633 kb on + strand, within IAI46_02740at 590.633 kb on + strand, within IAI46_02740at 590.634 kb on - strand, within IAI46_02740at 590.693 kb on + strand, within IAI46_02740at 590.724 kb on + strand, within IAI46_02740at 590.725 kb on - strand, within IAI46_02740at 590.835 kb on + strand, within IAI46_02740at 590.836 kb on - strand, within IAI46_02740at 590.836 kb on - strand, within IAI46_02740at 590.871 kb on + strand, within IAI46_02740at 590.871 kb on + strand, within IAI46_02740at 590.872 kb on - strand, within IAI46_02740at 590.881 kb on - strand, within IAI46_02740at 590.881 kb on - strand, within IAI46_02740at 590.952 kb on + strand, within IAI46_02740at 590.952 kb on + strand, within IAI46_02740at 591.089 kb on + strand, within IAI46_02740at 591.089 kb on + strand, within IAI46_02740at 591.089 kb on + strand, within IAI46_02740at 591.090 kb on - strand, within IAI46_02740at 591.090 kb on - strand, within IAI46_02740at 591.090 kb on - strand, within IAI46_02740at 591.090 kb on - strand, within IAI46_02740at 591.210 kb on + strand, within IAI46_02740at 591.210 kb on + strand, within IAI46_02740at 591.211 kb on - strand, within IAI46_02740at 591.211 kb on - strand, within IAI46_02740at 591.216 kb on + strand, within IAI46_02740at 591.244 kb on + strand, within IAI46_02740at 591.244 kb on + strand, within IAI46_02740at 591.252 kb on + strand, within IAI46_02740at 591.252 kb on + strand, within IAI46_02740at 591.253 kb on - strand, within IAI46_02740at 591.253 kb on - strand, within IAI46_02740at 591.253 kb on - strand, within IAI46_02740at 591.264 kb on + strand, within IAI46_02740at 591.264 kb on + strand, within IAI46_02740at 591.264 kb on + strand, within IAI46_02740at 591.265 kb on - strand, within IAI46_02740at 591.265 kb on - strand, within IAI46_02740at 591.265 kb on - strand, within IAI46_02740at 591.267 kb on + strand, within IAI46_02740at 591.268 kb on - strand, within IAI46_02740at 591.268 kb on - strand, within IAI46_02740at 591.268 kb on - strand, within IAI46_02740at 591.412 kb on + strand, within IAI46_02740at 591.500 kb on + strandat 591.572 kb on + strandat 591.572 kb on + strandat 591.572 kb on + strandat 591.572 kb on + strandat 591.573 kb on - strandat 591.716 kb on + strand, within IAI46_02745at 591.738 kb on - strand, within IAI46_02745at 591.761 kb on + strand, within IAI46_02745at 591.761 kb on + strand, within IAI46_02745at 591.761 kb on + strand, within IAI46_02745at 591.762 kb on - strand, within IAI46_02745at 591.871 kb on - strand, within IAI46_02745at 591.918 kb on + strand, within IAI46_02745at 591.919 kb on - strand, within IAI46_02745at 591.978 kb on + strandat 591.991 kb on - strandat 592.087 kb on + strand, within IAI46_02750at 592.088 kb on - strand, within IAI46_02750at 592.088 kb on - strand, within IAI46_02750at 592.088 kb on - strand, within IAI46_02750at 592.110 kb on - strand, within IAI46_02750at 592.150 kb on - strand, within IAI46_02750at 592.269 kb on + strand, within IAI46_02750at 592.269 kb on + strand, within IAI46_02750at 592.351 kb on + strand, within IAI46_02750at 592.351 kb on + strand, within IAI46_02750at 592.352 kb on - strand, within IAI46_02750at 592.352 kb on - strand, within IAI46_02750at 592.354 kb on - strand, within IAI46_02750at 592.367 kb on - strand, within IAI46_02750at 592.367 kb on - strand, within IAI46_02750at 592.407 kb on + strand, within IAI46_02750

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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589,597 + IAI46_02735 0.44 +0.6
589,597 + IAI46_02735 0.44 -0.5
589,597 + IAI46_02735 0.44 -0.4
589,598 - IAI46_02735 0.44 -0.3
589,598 - IAI46_02735 0.44 +0.5
589,810 + IAI46_02735 0.59 -0.6
589,950 - IAI46_02735 0.68 +0.7
589,950 - IAI46_02735 0.68 -0.3
589,950 - IAI46_02735 0.68 +0.7
590,165 + IAI46_02735 0.83 +0.8
590,165 + IAI46_02735 0.83 -0.3
590,180 + IAI46_02735 0.84 -0.2
590,180 + IAI46_02735 0.84 +0.7
590,181 - IAI46_02735 0.84 -0.1
590,181 - IAI46_02735 0.84 +0.0
590,228 - IAI46_02735 0.87 -1.3
590,426 - +0.3
590,426 - -0.2
590,463 - +0.2
590,505 + +0.3
590,505 + +1.4
590,505 + -2.0
590,506 - +0.2
590,506 - +0.2
590,531 + +0.1
590,532 - +0.5
590,550 + -0.5
590,601 + IAI46_02740 0.14 +1.2
590,602 - IAI46_02740 0.14 +1.8
590,602 - IAI46_02740 0.14 +0.2
590,602 - IAI46_02740 0.14 -0.4
590,624 + IAI46_02740 0.16 +0.5
590,633 + IAI46_02740 0.17 +0.7
590,633 + IAI46_02740 0.17 +0.6
590,634 - IAI46_02740 0.17 -0.2
590,693 + IAI46_02740 0.23 +0.7
590,724 + IAI46_02740 0.26 +0.2
590,725 - IAI46_02740 0.26 -0.3
590,835 + IAI46_02740 0.36 +0.5
590,836 - IAI46_02740 0.36 +0.1
590,836 - IAI46_02740 0.36 +0.4
590,871 + IAI46_02740 0.39 +0.1
590,871 + IAI46_02740 0.39 -0.7
590,872 - IAI46_02740 0.39 -0.5
590,881 - IAI46_02740 0.40 -0.6
590,881 - IAI46_02740 0.40 +0.1
590,952 + IAI46_02740 0.47 -1.1
590,952 + IAI46_02740 0.47 -1.1
591,089 + IAI46_02740 0.60 +0.1
591,089 + IAI46_02740 0.60 +0.3
591,089 + IAI46_02740 0.60 +0.2
591,090 - IAI46_02740 0.60 -0.1
591,090 - IAI46_02740 0.60 -0.1
591,090 - IAI46_02740 0.60 +0.8
591,090 - IAI46_02740 0.60 -0.2
591,210 + IAI46_02740 0.71 -0.3
591,210 + IAI46_02740 0.71 +0.1
591,211 - IAI46_02740 0.71 +0.8
591,211 - IAI46_02740 0.71 -1.3
591,216 + IAI46_02740 0.72 +0.6
591,244 + IAI46_02740 0.74 -0.0
591,244 + IAI46_02740 0.74 +0.3
591,252 + IAI46_02740 0.75 +0.5
591,252 + IAI46_02740 0.75 -0.1
591,253 - IAI46_02740 0.75 -0.7
591,253 - IAI46_02740 0.75 +0.8
591,253 - IAI46_02740 0.75 +0.2
591,264 + IAI46_02740 0.76 -1.4
591,264 + IAI46_02740 0.76 +1.1
591,264 + IAI46_02740 0.76 +0.1
591,265 - IAI46_02740 0.76 +0.5
591,265 - IAI46_02740 0.76 -0.1
591,265 - IAI46_02740 0.76 -0.8
591,267 + IAI46_02740 0.76 -0.1
591,268 - IAI46_02740 0.76 +0.2
591,268 - IAI46_02740 0.76 +0.2
591,268 - IAI46_02740 0.76 +0.2
591,412 + IAI46_02740 0.90 +0.7
591,500 + -0.5
591,572 + +1.2
591,572 + +0.4
591,572 + -0.0
591,572 + +0.5
591,573 - +0.6
591,716 + IAI46_02745 0.37 +0.7
591,738 - IAI46_02745 0.43 -0.5
591,761 + IAI46_02745 0.49 +0.9
591,761 + IAI46_02745 0.49 -0.9
591,761 + IAI46_02745 0.49 +0.1
591,762 - IAI46_02745 0.49 +0.2
591,871 - IAI46_02745 0.77 +0.5
591,918 + IAI46_02745 0.89 +0.8
591,919 - IAI46_02745 0.89 +0.2
591,978 + -0.3
591,991 - -0.6
592,087 + IAI46_02750 0.15 +0.1
592,088 - IAI46_02750 0.15 -0.8
592,088 - IAI46_02750 0.15 +0.4
592,088 - IAI46_02750 0.15 -0.9
592,110 - IAI46_02750 0.17 -0.7
592,150 - IAI46_02750 0.22 -1.0
592,269 + IAI46_02750 0.37 -0.2
592,269 + IAI46_02750 0.37 -1.1
592,351 + IAI46_02750 0.47 +0.5
592,351 + IAI46_02750 0.47 +0.9
592,352 - IAI46_02750 0.48 -0.5
592,352 - IAI46_02750 0.48 +0.1
592,354 - IAI46_02750 0.48 -0.3
592,367 - IAI46_02750 0.49 +1.3
592,367 - IAI46_02750 0.49 +0.7
592,407 + IAI46_02750 0.54 -0.0

Or see this region's nucleotide sequence