Strain Fitness in Serratia liquefaciens MT49 around IAI46_02270

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02255 and IAI46_02260 are separated by 8 nucleotidesIAI46_02260 and IAI46_02265 are separated by 43 nucleotidesIAI46_02265 and IAI46_02270 are separated by 157 nucleotidesIAI46_02270 and IAI46_02275 are separated by 12 nucleotides IAI46_02255: IAI46_02255 - hypothetical protein, at 478,019 to 478,639 _02255 IAI46_02260: IAI46_02260 - hypothetical protein, at 478,648 to 478,908 _02260 IAI46_02265: IAI46_02265 - 2-iminobutanoate/2-iminopropanoate deaminase, at 478,952 to 479,338 _02265 IAI46_02270: IAI46_02270 - aspartate carbamoyltransferase regulatory subunit, at 479,496 to 479,960 _02270 IAI46_02275: IAI46_02275 - aspartate carbamoyltransferase, at 479,973 to 480,908 _02275 Position (kb) 479 480Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 478.501 kb on + strand, within IAI46_02255at 478.501 kb on + strand, within IAI46_02255at 478.501 kb on + strand, within IAI46_02255at 478.502 kb on - strand, within IAI46_02255at 478.508 kb on - strand, within IAI46_02255at 478.554 kb on + strand, within IAI46_02255at 478.601 kb on + strandat 478.636 kb on - strandat 478.638 kb on - strandat 478.638 kb on - strandat 478.638 kb on - strandat 478.647 kb on + strandat 478.647 kb on + strandat 478.648 kb on - strandat 478.656 kb on + strandat 478.656 kb on + strandat 478.657 kb on - strandat 478.657 kb on - strandat 478.677 kb on - strand, within IAI46_02260at 478.693 kb on + strand, within IAI46_02260at 478.707 kb on - strand, within IAI46_02260at 478.708 kb on + strand, within IAI46_02260at 478.709 kb on - strand, within IAI46_02260at 478.747 kb on + strand, within IAI46_02260at 478.749 kb on + strand, within IAI46_02260at 478.765 kb on - strand, within IAI46_02260at 478.795 kb on - strand, within IAI46_02260at 479.067 kb on + strand, within IAI46_02265at 479.095 kb on + strand, within IAI46_02265at 479.330 kb on - strandat 479.330 kb on - strandat 479.330 kb on - strandat 479.351 kb on + strandat 479.351 kb on + strandat 479.351 kb on + strandat 479.352 kb on - strandat 479.352 kb on - strandat 479.352 kb on - strandat 479.353 kb on + strandat 479.353 kb on + strandat 479.354 kb on - strandat 479.354 kb on - strandat 479.354 kb on - strandat 479.443 kb on + strandat 479.444 kb on - strandat 479.444 kb on - strandat 479.445 kb on + strandat 479.445 kb on + strandat 479.445 kb on + strandat 479.446 kb on - strandat 479.464 kb on + strandat 479.559 kb on + strand, within IAI46_02270at 479.560 kb on - strand, within IAI46_02270at 479.560 kb on - strand, within IAI46_02270at 479.585 kb on + strand, within IAI46_02270at 479.695 kb on + strand, within IAI46_02270at 479.696 kb on - strand, within IAI46_02270at 479.731 kb on + strand, within IAI46_02270at 479.731 kb on + strand, within IAI46_02270at 479.732 kb on - strand, within IAI46_02270at 479.732 kb on - strand, within IAI46_02270at 479.732 kb on - strand, within IAI46_02270at 479.879 kb on + strand, within IAI46_02270at 479.880 kb on - strand, within IAI46_02270at 479.900 kb on + strand, within IAI46_02270at 479.901 kb on - strand, within IAI46_02270at 480.052 kb on + strandat 480.053 kb on - strandat 480.083 kb on + strand, within IAI46_02275at 480.229 kb on + strand, within IAI46_02275at 480.229 kb on + strand, within IAI46_02275at 480.229 kb on + strand, within IAI46_02275at 480.229 kb on + strand, within IAI46_02275at 480.229 kb on + strand, within IAI46_02275at 480.230 kb on - strand, within IAI46_02275at 480.230 kb on - strand, within IAI46_02275at 480.314 kb on + strand, within IAI46_02275at 480.317 kb on - strand, within IAI46_02275at 480.317 kb on - strand, within IAI46_02275at 480.613 kb on + strand, within IAI46_02275at 480.614 kb on - strand, within IAI46_02275at 480.614 kb on - strand, within IAI46_02275at 480.869 kb on + strandat 480.872 kb on + strandat 480.872 kb on + strandat 480.872 kb on + strandat 480.873 kb on - strandat 480.873 kb on - strandat 480.873 kb on - strandat 480.881 kb on + strandat 480.881 kb on + strandat 480.881 kb on + strandat 480.881 kb on + strandat 480.882 kb on - strandat 480.882 kb on - strandat 480.882 kb on - strandat 480.882 kb on - strandat 480.882 kb on - strandat 480.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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478,501 + IAI46_02255 0.78 -0.1
478,501 + IAI46_02255 0.78 +1.3
478,501 + IAI46_02255 0.78 -0.4
478,502 - IAI46_02255 0.78 +2.1
478,508 - IAI46_02255 0.79 +0.0
478,554 + IAI46_02255 0.86 +0.3
478,601 + -0.2
478,636 - -0.3
478,638 - +0.1
478,638 - -0.2
478,638 - -0.5
478,647 + +1.1
478,647 + +0.6
478,648 - -0.2
478,656 + -0.2
478,656 + +0.7
478,657 - -0.4
478,657 - +0.6
478,677 - IAI46_02260 0.11 -1.2
478,693 + IAI46_02260 0.17 -1.0
478,707 - IAI46_02260 0.23 +0.3
478,708 + IAI46_02260 0.23 +0.5
478,709 - IAI46_02260 0.23 +1.2
478,747 + IAI46_02260 0.38 +0.8
478,749 + IAI46_02260 0.39 -0.0
478,765 - IAI46_02260 0.45 +1.5
478,795 - IAI46_02260 0.56 -0.5
479,067 + IAI46_02265 0.30 +0.3
479,095 + IAI46_02265 0.37 +0.1
479,330 - +1.2
479,330 - -0.1
479,330 - -0.4
479,351 + -0.6
479,351 + +1.1
479,351 + -0.1
479,352 - +1.1
479,352 - -0.4
479,352 - +0.4
479,353 + +0.4
479,353 + +0.9
479,354 - -0.0
479,354 - +0.2
479,354 - -0.3
479,443 + +0.1
479,444 - +0.0
479,444 - -0.5
479,445 + -0.4
479,445 + -0.3
479,445 + -0.5
479,446 - -1.0
479,464 + -0.4
479,559 + IAI46_02270 0.14 -0.7
479,560 - IAI46_02270 0.14 +0.4
479,560 - IAI46_02270 0.14 -0.6
479,585 + IAI46_02270 0.19 +0.8
479,695 + IAI46_02270 0.43 -0.9
479,696 - IAI46_02270 0.43 -0.1
479,731 + IAI46_02270 0.51 -0.1
479,731 + IAI46_02270 0.51 -1.0
479,732 - IAI46_02270 0.51 +0.1
479,732 - IAI46_02270 0.51 -0.8
479,732 - IAI46_02270 0.51 -0.1
479,879 + IAI46_02270 0.82 +0.8
479,880 - IAI46_02270 0.83 +0.3
479,900 + IAI46_02270 0.87 -0.2
479,901 - IAI46_02270 0.87 +0.3
480,052 + -4.0
480,053 - -1.5
480,083 + IAI46_02275 0.12 -0.5
480,229 + IAI46_02275 0.27 -1.0
480,229 + IAI46_02275 0.27 -1.0
480,229 + IAI46_02275 0.27 -2.1
480,229 + IAI46_02275 0.27 -1.8
480,229 + IAI46_02275 0.27 -1.3
480,230 - IAI46_02275 0.27 -2.3
480,230 - IAI46_02275 0.27 -2.6
480,314 + IAI46_02275 0.36 -0.2
480,317 - IAI46_02275 0.37 -1.8
480,317 - IAI46_02275 0.37 -2.1
480,613 + IAI46_02275 0.68 -2.9
480,614 - IAI46_02275 0.68 -0.2
480,614 - IAI46_02275 0.68 -2.1
480,869 + -1.7
480,872 + -1.2
480,872 + -2.6
480,872 + -3.0
480,873 - +0.5
480,873 - -1.8
480,873 - -0.2
480,881 + -0.8
480,881 + -1.1
480,881 + -2.2
480,881 + -2.4
480,882 - -2.0
480,882 - -2.2
480,882 - -0.2
480,882 - -1.2
480,882 - +0.2
480,893 - -0.5

Or see this region's nucleotide sequence