Strain Fitness in Serratia liquefaciens MT49 around IAI46_00685

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00680 and IAI46_00685 are separated by 3 nucleotidesIAI46_00685 and IAI46_00690 are separated by 17 nucleotidesIAI46_00690 and IAI46_00695 overlap by 4 nucleotides IAI46_00680: IAI46_00680 - protoheme IX biogenesis protein HemY, at 156,482 to 157,675 _00680 IAI46_00685: IAI46_00685 - uroporphyrinogen-III C-methyltransferase, at 157,679 to 158,803 _00685 IAI46_00690: IAI46_00690 - uroporphyrinogen-III synthase, at 158,821 to 159,567 _00690 IAI46_00695: IAI46_00695 - hydroxymethylbilane synthase, at 159,564 to 160,505 _00695 Position (kb) 157 158 159Strain fitness (log2 ratio) -2 -1 0 1 2at 156.686 kb on + strand, within IAI46_00680at 156.687 kb on - strand, within IAI46_00680at 156.687 kb on - strand, within IAI46_00680at 156.795 kb on + strand, within IAI46_00680at 156.981 kb on + strand, within IAI46_00680at 156.981 kb on + strand, within IAI46_00680at 156.981 kb on + strand, within IAI46_00680at 156.981 kb on + strand, within IAI46_00680at 156.982 kb on - strand, within IAI46_00680at 156.982 kb on - strand, within IAI46_00680at 156.982 kb on - strand, within IAI46_00680at 156.982 kb on - strand, within IAI46_00680at 156.982 kb on - strand, within IAI46_00680at 156.982 kb on - strand, within IAI46_00680at 157.086 kb on + strand, within IAI46_00680at 157.087 kb on - strand, within IAI46_00680at 157.109 kb on + strand, within IAI46_00680at 157.109 kb on + strand, within IAI46_00680at 157.109 kb on + strand, within IAI46_00680at 157.110 kb on - strand, within IAI46_00680at 157.135 kb on + strand, within IAI46_00680at 157.212 kb on - strand, within IAI46_00680at 157.212 kb on - strand, within IAI46_00680at 157.212 kb on - strand, within IAI46_00680at 157.257 kb on + strand, within IAI46_00680at 157.257 kb on + strand, within IAI46_00680at 157.258 kb on - strand, within IAI46_00680at 157.258 kb on - strand, within IAI46_00680at 157.314 kb on + strand, within IAI46_00680at 157.314 kb on + strand, within IAI46_00680at 157.314 kb on + strand, within IAI46_00680at 157.315 kb on - strand, within IAI46_00680at 157.315 kb on - strand, within IAI46_00680at 157.315 kb on - strand, within IAI46_00680at 157.377 kb on + strand, within IAI46_00680at 157.377 kb on + strand, within IAI46_00680at 157.377 kb on + strand, within IAI46_00680at 157.378 kb on - strand, within IAI46_00680at 157.378 kb on - strand, within IAI46_00680at 157.378 kb on - strand, within IAI46_00680at 157.531 kb on + strand, within IAI46_00680at 157.532 kb on - strand, within IAI46_00680at 157.532 kb on - strand, within IAI46_00680at 157.532 kb on - strand, within IAI46_00680at 157.572 kb on + strandat 157.572 kb on + strandat 157.572 kb on + strandat 157.572 kb on + strandat 157.572 kb on + strandat 157.572 kb on + strandat 157.573 kb on - strandat 157.573 kb on - strandat 157.573 kb on - strandat 157.573 kb on - strandat 157.576 kb on + strandat 157.576 kb on + strandat 157.596 kb on + strandat 157.596 kb on + strandat 157.596 kb on + strandat 157.596 kb on + strandat 157.597 kb on - strandat 157.597 kb on - strandat 157.597 kb on - strandat 157.597 kb on - strandat 157.670 kb on + strandat 157.670 kb on + strandat 157.670 kb on + strandat 157.680 kb on + strandat 157.860 kb on + strand, within IAI46_00685at 157.860 kb on + strand, within IAI46_00685at 157.900 kb on + strand, within IAI46_00685at 157.900 kb on + strand, within IAI46_00685at 157.900 kb on + strand, within IAI46_00685at 157.900 kb on + strand, within IAI46_00685at 157.901 kb on - strand, within IAI46_00685at 157.901 kb on - strand, within IAI46_00685at 157.901 kb on - strand, within IAI46_00685at 157.901 kb on - strand, within IAI46_00685at 157.903 kb on - strand, within IAI46_00685at 157.903 kb on - strand, within IAI46_00685at 157.974 kb on + strand, within IAI46_00685at 157.974 kb on + strand, within IAI46_00685at 157.975 kb on - strand, within IAI46_00685at 157.975 kb on - strand, within IAI46_00685at 158.015 kb on - strand, within IAI46_00685at 158.033 kb on - strand, within IAI46_00685at 158.035 kb on + strand, within IAI46_00685at 158.036 kb on - strand, within IAI46_00685at 158.047 kb on + strand, within IAI46_00685at 158.165 kb on - strand, within IAI46_00685at 158.239 kb on + strand, within IAI46_00685at 158.240 kb on - strand, within IAI46_00685at 158.365 kb on + strand, within IAI46_00685at 158.365 kb on + strand, within IAI46_00685at 158.365 kb on + strand, within IAI46_00685at 158.366 kb on - strand, within IAI46_00685at 158.366 kb on - strand, within IAI46_00685at 158.366 kb on - strand, within IAI46_00685at 158.434 kb on + strand, within IAI46_00685at 158.434 kb on + strand, within IAI46_00685at 158.435 kb on - strand, within IAI46_00685at 158.435 kb on - strand, within IAI46_00685at 158.438 kb on - strand, within IAI46_00685at 158.635 kb on + strand, within IAI46_00685at 158.635 kb on + strand, within IAI46_00685at 158.636 kb on - strand, within IAI46_00685at 158.636 kb on - strand, within IAI46_00685at 158.636 kb on - strand, within IAI46_00685at 158.636 kb on - strand, within IAI46_00685at 158.636 kb on - strand, within IAI46_00685at 158.640 kb on + strand, within IAI46_00685at 158.640 kb on + strand, within IAI46_00685at 158.640 kb on + strand, within IAI46_00685at 158.641 kb on - strand, within IAI46_00685at 158.643 kb on + strand, within IAI46_00685at 158.644 kb on - strand, within IAI46_00685at 158.644 kb on - strand, within IAI46_00685at 158.711 kb on - strandat 158.716 kb on + strandat 158.789 kb on - strandat 158.789 kb on - strandat 158.804 kb on - strandat 158.804 kb on - strandat 158.819 kb on - strandat 159.587 kb on - strandat 159.587 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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156,686 + IAI46_00680 0.17 -0.9
156,687 - IAI46_00680 0.17 -0.5
156,687 - IAI46_00680 0.17 +0.2
156,795 + IAI46_00680 0.26 -1.0
156,981 + IAI46_00680 0.42 +0.1
156,981 + IAI46_00680 0.42 -0.0
156,981 + IAI46_00680 0.42 -0.0
156,981 + IAI46_00680 0.42 -0.1
156,982 - IAI46_00680 0.42 +0.5
156,982 - IAI46_00680 0.42 +0.4
156,982 - IAI46_00680 0.42 +0.6
156,982 - IAI46_00680 0.42 -0.1
156,982 - IAI46_00680 0.42 -0.4
156,982 - IAI46_00680 0.42 -0.0
157,086 + IAI46_00680 0.51 -0.3
157,087 - IAI46_00680 0.51 +1.1
157,109 + IAI46_00680 0.53 +0.3
157,109 + IAI46_00680 0.53 +0.6
157,109 + IAI46_00680 0.53 +0.6
157,110 - IAI46_00680 0.53 -0.3
157,135 + IAI46_00680 0.55 +1.4
157,212 - IAI46_00680 0.61 +0.3
157,212 - IAI46_00680 0.61 +0.1
157,212 - IAI46_00680 0.61 +1.0
157,257 + IAI46_00680 0.65 -0.0
157,257 + IAI46_00680 0.65 +0.5
157,258 - IAI46_00680 0.65 +0.5
157,258 - IAI46_00680 0.65 -0.1
157,314 + IAI46_00680 0.70 +0.7
157,314 + IAI46_00680 0.70 -1.3
157,314 + IAI46_00680 0.70 -0.3
157,315 - IAI46_00680 0.70 +1.6
157,315 - IAI46_00680 0.70 -0.5
157,315 - IAI46_00680 0.70 +0.4
157,377 + IAI46_00680 0.75 -0.6
157,377 + IAI46_00680 0.75 +0.4
157,377 + IAI46_00680 0.75 +0.2
157,378 - IAI46_00680 0.75 +1.5
157,378 - IAI46_00680 0.75 +0.6
157,378 - IAI46_00680 0.75 +0.0
157,531 + IAI46_00680 0.88 +0.1
157,532 - IAI46_00680 0.88 -0.1
157,532 - IAI46_00680 0.88 -0.2
157,532 - IAI46_00680 0.88 -0.0
157,572 + +0.8
157,572 + +0.7
157,572 + +0.7
157,572 + +0.2
157,572 + -0.1
157,572 + -0.3
157,573 - +0.4
157,573 - +0.1
157,573 - -1.3
157,573 - +0.6
157,576 + +0.3
157,576 + +0.7
157,596 + -0.8
157,596 + +0.8
157,596 + -0.1
157,596 + -1.7
157,597 - -0.3
157,597 - -0.9
157,597 - +0.8
157,597 - +0.6
157,670 + -0.1
157,670 + +1.1
157,670 + -1.5
157,680 + +0.8
157,860 + IAI46_00685 0.16 +0.3
157,860 + IAI46_00685 0.16 +1.0
157,900 + IAI46_00685 0.20 -0.4
157,900 + IAI46_00685 0.20 +0.7
157,900 + IAI46_00685 0.20 +0.3
157,900 + IAI46_00685 0.20 +0.7
157,901 - IAI46_00685 0.20 +0.8
157,901 - IAI46_00685 0.20 +0.6
157,901 - IAI46_00685 0.20 +0.3
157,901 - IAI46_00685 0.20 +0.4
157,903 - IAI46_00685 0.20 -0.9
157,903 - IAI46_00685 0.20 +1.2
157,974 + IAI46_00685 0.26 -0.6
157,974 + IAI46_00685 0.26 +1.0
157,975 - IAI46_00685 0.26 +1.2
157,975 - IAI46_00685 0.26 +0.5
158,015 - IAI46_00685 0.30 -0.3
158,033 - IAI46_00685 0.31 -0.9
158,035 + IAI46_00685 0.32 -0.1
158,036 - IAI46_00685 0.32 -0.8
158,047 + IAI46_00685 0.33 +1.2
158,165 - IAI46_00685 0.43 +1.2
158,239 + IAI46_00685 0.50 +1.4
158,240 - IAI46_00685 0.50 +1.8
158,365 + IAI46_00685 0.61 -0.2
158,365 + IAI46_00685 0.61 +0.1
158,365 + IAI46_00685 0.61 +0.7
158,366 - IAI46_00685 0.61 +1.4
158,366 - IAI46_00685 0.61 -0.2
158,366 - IAI46_00685 0.61 +0.9
158,434 + IAI46_00685 0.67 -1.3
158,434 + IAI46_00685 0.67 -0.4
158,435 - IAI46_00685 0.67 +1.7
158,435 - IAI46_00685 0.67 -0.6
158,438 - IAI46_00685 0.67 -2.0
158,635 + IAI46_00685 0.85 -1.3
158,635 + IAI46_00685 0.85 +0.1
158,636 - IAI46_00685 0.85 -0.9
158,636 - IAI46_00685 0.85 +0.3
158,636 - IAI46_00685 0.85 +1.0
158,636 - IAI46_00685 0.85 -0.7
158,636 - IAI46_00685 0.85 -0.7
158,640 + IAI46_00685 0.85 +1.2
158,640 + IAI46_00685 0.85 -1.2
158,640 + IAI46_00685 0.85 -1.0
158,641 - IAI46_00685 0.86 +1.1
158,643 + IAI46_00685 0.86 -0.4
158,644 - IAI46_00685 0.86 -0.4
158,644 - IAI46_00685 0.86 +0.7
158,711 - +1.5
158,716 + -0.3
158,789 - -1.7
158,789 - +0.5
158,804 - +0.6
158,804 - +0.0
158,819 - +0.7
159,587 - -0.3
159,587 - +0.0

Or see this region's nucleotide sequence