Strain Fitness in Serratia liquefaciens MT49 around IAI46_00320

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00310 and IAI46_00315 are separated by 5 nucleotidesIAI46_00315 and IAI46_00320 are separated by 126 nucleotidesIAI46_00320 and IAI46_00325 are separated by 76 nucleotides IAI46_00310: IAI46_00310 - DNA-binding protein, at 72,529 to 72,969 _00310 IAI46_00315: IAI46_00315 - LysR family transcriptional regulator, at 72,975 to 73,829 _00315 IAI46_00320: IAI46_00320 - cyanate transporter, at 73,956 to 75,155 _00320 IAI46_00325: IAI46_00325 - esterase-like activity of phytase family protein, at 75,232 to 76,578 _00325 Position (kb) 73 74 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 72.967 kb on + strandat 73.045 kb on + strandat 73.046 kb on - strandat 73.048 kb on + strandat 73.048 kb on + strandat 73.048 kb on + strandat 73.049 kb on - strandat 73.199 kb on - strand, within IAI46_00315at 73.322 kb on + strand, within IAI46_00315at 73.370 kb on + strand, within IAI46_00315at 73.415 kb on - strand, within IAI46_00315at 73.415 kb on - strand, within IAI46_00315at 73.418 kb on - strand, within IAI46_00315at 73.503 kb on - strand, within IAI46_00315at 73.560 kb on - strand, within IAI46_00315at 73.612 kb on + strand, within IAI46_00315at 73.612 kb on + strand, within IAI46_00315at 73.612 kb on + strand, within IAI46_00315at 73.612 kb on + strand, within IAI46_00315at 73.613 kb on - strand, within IAI46_00315at 73.613 kb on - strand, within IAI46_00315at 73.613 kb on - strand, within IAI46_00315at 73.732 kb on - strand, within IAI46_00315at 73.763 kb on + strandat 73.763 kb on + strandat 73.764 kb on - strandat 73.764 kb on - strandat 73.798 kb on - strandat 73.884 kb on + strandat 73.884 kb on + strandat 73.885 kb on - strandat 73.885 kb on - strandat 73.890 kb on - strandat 73.890 kb on - strandat 73.907 kb on + strandat 73.908 kb on - strandat 73.950 kb on + strandat 73.950 kb on + strandat 73.951 kb on - strandat 73.951 kb on - strandat 73.961 kb on - strandat 73.961 kb on - strandat 73.961 kb on - strandat 73.970 kb on + strandat 73.970 kb on + strandat 73.970 kb on + strandat 73.971 kb on - strandat 73.971 kb on - strandat 73.971 kb on - strandat 73.987 kb on + strandat 73.988 kb on - strandat 74.060 kb on + strandat 74.342 kb on + strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.433 kb on - strand, within IAI46_00320at 74.433 kb on - strand, within IAI46_00320at 74.467 kb on - strand, within IAI46_00320at 74.468 kb on + strand, within IAI46_00320at 74.468 kb on + strand, within IAI46_00320at 74.581 kb on + strand, within IAI46_00320at 74.616 kb on + strand, within IAI46_00320at 74.630 kb on + strand, within IAI46_00320at 74.670 kb on + strand, within IAI46_00320at 74.673 kb on + strand, within IAI46_00320at 74.673 kb on + strand, within IAI46_00320at 74.673 kb on + strand, within IAI46_00320at 74.673 kb on + strand, within IAI46_00320at 74.674 kb on - strand, within IAI46_00320at 74.674 kb on - strand, within IAI46_00320at 74.674 kb on - strand, within IAI46_00320at 74.795 kb on - strand, within IAI46_00320at 74.840 kb on + strand, within IAI46_00320at 74.840 kb on + strand, within IAI46_00320at 74.840 kb on + strand, within IAI46_00320at 74.840 kb on + strand, within IAI46_00320at 74.841 kb on - strand, within IAI46_00320at 74.844 kb on + strand, within IAI46_00320at 74.845 kb on - strand, within IAI46_00320at 74.875 kb on + strand, within IAI46_00320at 74.876 kb on - strand, within IAI46_00320at 74.939 kb on + strand, within IAI46_00320at 75.019 kb on - strand, within IAI46_00320at 75.019 kb on - strand, within IAI46_00320at 75.042 kb on + strandat 75.154 kb on - strandat 75.157 kb on - strandat 75.157 kb on - strandat 75.157 kb on - strandat 75.178 kb on + strandat 75.179 kb on - strandat 75.179 kb on - strandat 75.180 kb on + strandat 75.180 kb on + strandat 75.180 kb on + strandat 75.180 kb on + strandat 75.181 kb on - strandat 75.181 kb on - strandat 75.195 kb on + strandat 75.196 kb on - strandat 75.274 kb on - strandat 75.410 kb on - strand, within IAI46_00325at 75.410 kb on - strand, within IAI46_00325at 75.410 kb on - strand, within IAI46_00325at 75.410 kb on - strand, within IAI46_00325at 75.410 kb on - strand, within IAI46_00325at 75.547 kb on + strand, within IAI46_00325at 75.547 kb on + strand, within IAI46_00325at 75.547 kb on + strand, within IAI46_00325at 75.548 kb on - strand, within IAI46_00325at 75.607 kb on + strand, within IAI46_00325at 75.607 kb on + strand, within IAI46_00325at 75.608 kb on - strand, within IAI46_00325at 75.619 kb on + strand, within IAI46_00325at 75.811 kb on + strand, within IAI46_00325at 76.067 kb on - strand, within IAI46_00325at 76.126 kb on + strand, within IAI46_00325at 76.126 kb on + strand, within IAI46_00325at 76.126 kb on + strand, within IAI46_00325at 76.127 kb on - strand, within IAI46_00325at 76.127 kb on - strand, within IAI46_00325

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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72,967 + +0.3
73,045 + -0.7
73,046 - +0.6
73,048 + +1.2
73,048 + -0.1
73,048 + -0.3
73,049 - +1.9
73,199 - IAI46_00315 0.26 -0.8
73,322 + IAI46_00315 0.41 -0.3
73,370 + IAI46_00315 0.46 +0.2
73,415 - IAI46_00315 0.51 -0.3
73,415 - IAI46_00315 0.51 -0.2
73,418 - IAI46_00315 0.52 -0.1
73,503 - IAI46_00315 0.62 +1.4
73,560 - IAI46_00315 0.68 -0.1
73,612 + IAI46_00315 0.75 +0.2
73,612 + IAI46_00315 0.75 +0.5
73,612 + IAI46_00315 0.75 -1.0
73,612 + IAI46_00315 0.75 -0.5
73,613 - IAI46_00315 0.75 +1.1
73,613 - IAI46_00315 0.75 -0.7
73,613 - IAI46_00315 0.75 -0.8
73,732 - IAI46_00315 0.89 +0.1
73,763 + -1.0
73,763 + +0.6
73,764 - +0.6
73,764 - +0.2
73,798 - -0.1
73,884 + +0.1
73,884 + -0.5
73,885 - -0.9
73,885 - +0.4
73,890 - +0.1
73,890 - +0.4
73,907 + +0.4
73,908 - +0.5
73,950 + +0.4
73,950 + -0.3
73,951 - +0.6
73,951 - -0.6
73,961 - +0.6
73,961 - -1.1
73,961 - +0.6
73,970 + -0.3
73,970 + +0.0
73,970 + +0.3
73,971 - -0.7
73,971 - +0.0
73,971 - +0.2
73,987 + +1.6
73,988 - +0.3
74,060 + -0.1
74,342 + IAI46_00320 0.32 +0.3
74,343 - IAI46_00320 0.32 +1.2
74,343 - IAI46_00320 0.32 +0.6
74,343 - IAI46_00320 0.32 -0.0
74,343 - IAI46_00320 0.32 +0.0
74,343 - IAI46_00320 0.32 -0.5
74,343 - IAI46_00320 0.32 -1.4
74,433 - IAI46_00320 0.40 +0.3
74,433 - IAI46_00320 0.40 +0.8
74,467 - IAI46_00320 0.43 +0.7
74,468 + IAI46_00320 0.43 -0.2
74,468 + IAI46_00320 0.43 +0.1
74,581 + IAI46_00320 0.52 +0.9
74,616 + IAI46_00320 0.55 -0.2
74,630 + IAI46_00320 0.56 +0.6
74,670 + IAI46_00320 0.59 +0.7
74,673 + IAI46_00320 0.60 -1.2
74,673 + IAI46_00320 0.60 +0.4
74,673 + IAI46_00320 0.60 +0.2
74,673 + IAI46_00320 0.60 -1.1
74,674 - IAI46_00320 0.60 +0.2
74,674 - IAI46_00320 0.60 -0.3
74,674 - IAI46_00320 0.60 +0.4
74,795 - IAI46_00320 0.70 +0.4
74,840 + IAI46_00320 0.74 +0.3
74,840 + IAI46_00320 0.74 -2.2
74,840 + IAI46_00320 0.74 -1.7
74,840 + IAI46_00320 0.74 +0.3
74,841 - IAI46_00320 0.74 +0.1
74,844 + IAI46_00320 0.74 +0.7
74,845 - IAI46_00320 0.74 -0.3
74,875 + IAI46_00320 0.77 -1.4
74,876 - IAI46_00320 0.77 -0.2
74,939 + IAI46_00320 0.82 -0.2
75,019 - IAI46_00320 0.89 +0.3
75,019 - IAI46_00320 0.89 +0.6
75,042 + +0.4
75,154 - -1.1
75,157 - +0.2
75,157 - +0.9
75,157 - +0.4
75,178 + -0.1
75,179 - +0.4
75,179 - +0.2
75,180 + +0.4
75,180 + +0.4
75,180 + +0.1
75,180 + +0.5
75,181 - -0.4
75,181 - -0.2
75,195 + -0.1
75,196 - -0.1
75,274 - +0.8
75,410 - IAI46_00325 0.13 +0.3
75,410 - IAI46_00325 0.13 +0.4
75,410 - IAI46_00325 0.13 +0.4
75,410 - IAI46_00325 0.13 +0.2
75,410 - IAI46_00325 0.13 +0.2
75,547 + IAI46_00325 0.23 +0.3
75,547 + IAI46_00325 0.23 -0.9
75,547 + IAI46_00325 0.23 -0.5
75,548 - IAI46_00325 0.23 +0.4
75,607 + IAI46_00325 0.28 +0.0
75,607 + IAI46_00325 0.28 +0.2
75,608 - IAI46_00325 0.28 +0.4
75,619 + IAI46_00325 0.29 +0.0
75,811 + IAI46_00325 0.43 -0.2
76,067 - IAI46_00325 0.62 +0.4
76,126 + IAI46_00325 0.66 +0.4
76,126 + IAI46_00325 0.66 +0.0
76,126 + IAI46_00325 0.66 -0.1
76,127 - IAI46_00325 0.66 -1.4
76,127 - IAI46_00325 0.66 -1.3

Or see this region's nucleotide sequence