Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2945

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2944 and Echvi_2945 are separated by 98 nucleotidesEchvi_2945 and Echvi_2946 are separated by 6 nucleotides Echvi_2944: Echvi_2944 - cation diffusion facilitator family transporter, at 3,521,911 to 3,522,834 _2944 Echvi_2945: Echvi_2945 - Domain of unknown function (DUF1905)., at 3,522,933 to 3,523,445 _2945 Echvi_2946: Echvi_2946 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 3,523,452 to 3,524,459 _2946 Position (kb) 3522 3523 3524Strain fitness (log2 ratio) -2 -1 0 1 2at 3521.990 kb on - strandat 3522.007 kb on - strand, within Echvi_2944at 3522.007 kb on - strand, within Echvi_2944at 3522.082 kb on + strand, within Echvi_2944at 3522.141 kb on + strand, within Echvi_2944at 3522.141 kb on + strand, within Echvi_2944at 3522.141 kb on + strand, within Echvi_2944at 3522.141 kb on + strand, within Echvi_2944at 3522.141 kb on + strand, within Echvi_2944at 3522.142 kb on - strand, within Echvi_2944at 3522.142 kb on - strand, within Echvi_2944at 3522.142 kb on - strand, within Echvi_2944at 3522.145 kb on + strand, within Echvi_2944at 3522.279 kb on + strand, within Echvi_2944at 3522.281 kb on + strand, within Echvi_2944at 3522.281 kb on + strand, within Echvi_2944at 3522.282 kb on - strand, within Echvi_2944at 3522.282 kb on - strand, within Echvi_2944at 3522.282 kb on - strand, within Echvi_2944at 3522.318 kb on - strand, within Echvi_2944at 3522.376 kb on + strand, within Echvi_2944at 3522.377 kb on - strand, within Echvi_2944at 3522.464 kb on - strand, within Echvi_2944at 3522.542 kb on - strand, within Echvi_2944at 3522.546 kb on + strand, within Echvi_2944at 3522.571 kb on + strand, within Echvi_2944at 3522.580 kb on + strand, within Echvi_2944at 3522.611 kb on + strand, within Echvi_2944at 3522.621 kb on + strand, within Echvi_2944at 3522.627 kb on + strand, within Echvi_2944at 3522.627 kb on + strand, within Echvi_2944at 3522.717 kb on + strand, within Echvi_2944at 3522.726 kb on + strand, within Echvi_2944at 3522.727 kb on - strand, within Echvi_2944at 3522.727 kb on - strand, within Echvi_2944at 3522.727 kb on - strand, within Echvi_2944at 3522.729 kb on + strand, within Echvi_2944at 3522.729 kb on + strand, within Echvi_2944at 3522.737 kb on + strand, within Echvi_2944at 3522.737 kb on + strand, within Echvi_2944at 3522.738 kb on - strand, within Echvi_2944at 3522.738 kb on - strand, within Echvi_2944at 3522.738 kb on - strand, within Echvi_2944at 3522.738 kb on - strand, within Echvi_2944at 3522.839 kb on + strandat 3522.869 kb on - strandat 3522.884 kb on + strandat 3522.910 kb on + strandat 3522.953 kb on - strandat 3522.999 kb on + strand, within Echvi_2945at 3523.000 kb on - strand, within Echvi_2945at 3523.017 kb on + strand, within Echvi_2945at 3523.018 kb on - strand, within Echvi_2945at 3523.144 kb on - strand, within Echvi_2945at 3523.370 kb on + strand, within Echvi_2945at 3523.499 kb on + strandat 3523.500 kb on - strandat 3523.541 kb on + strandat 3523.932 kb on - strand, within Echvi_2946at 3524.317 kb on + strand, within Echvi_2946at 3524.346 kb on - strand, within Echvi_2946at 3524.402 kb on + strandat 3524.402 kb on + strandat 3524.403 kb on - strandat 3524.406 kb on + strandat 3524.407 kb on - strandat 3524.407 kb on - strandat 3524.407 kb on - strandat 3524.410 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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3,521,990 - -1.4
3,522,007 - Echvi_2944 0.10 -2.1
3,522,007 - Echvi_2944 0.10 -0.8
3,522,082 + Echvi_2944 0.19 +0.6
3,522,141 + Echvi_2944 0.25 +0.3
3,522,141 + Echvi_2944 0.25 -0.3
3,522,141 + Echvi_2944 0.25 +0.2
3,522,141 + Echvi_2944 0.25 -0.0
3,522,141 + Echvi_2944 0.25 -0.1
3,522,142 - Echvi_2944 0.25 -0.1
3,522,142 - Echvi_2944 0.25 -0.5
3,522,142 - Echvi_2944 0.25 -0.6
3,522,145 + Echvi_2944 0.25 -1.1
3,522,279 + Echvi_2944 0.40 -0.0
3,522,281 + Echvi_2944 0.40 -0.2
3,522,281 + Echvi_2944 0.40 +1.0
3,522,282 - Echvi_2944 0.40 +1.0
3,522,282 - Echvi_2944 0.40 -0.4
3,522,282 - Echvi_2944 0.40 +1.4
3,522,318 - Echvi_2944 0.44 -0.2
3,522,376 + Echvi_2944 0.50 +0.1
3,522,377 - Echvi_2944 0.50 -0.6
3,522,464 - Echvi_2944 0.60 -0.5
3,522,542 - Echvi_2944 0.68 -0.4
3,522,546 + Echvi_2944 0.69 -0.0
3,522,571 + Echvi_2944 0.71 +0.3
3,522,580 + Echvi_2944 0.72 +1.3
3,522,611 + Echvi_2944 0.76 -1.2
3,522,621 + Echvi_2944 0.77 +0.7
3,522,627 + Echvi_2944 0.77 -0.3
3,522,627 + Echvi_2944 0.77 +0.6
3,522,717 + Echvi_2944 0.87 +0.6
3,522,726 + Echvi_2944 0.88 +0.5
3,522,727 - Echvi_2944 0.88 -0.8
3,522,727 - Echvi_2944 0.88 +0.3
3,522,727 - Echvi_2944 0.88 -0.8
3,522,729 + Echvi_2944 0.89 +0.9
3,522,729 + Echvi_2944 0.89 -0.2
3,522,737 + Echvi_2944 0.89 +0.1
3,522,737 + Echvi_2944 0.89 -1.2
3,522,738 - Echvi_2944 0.90 -2.5
3,522,738 - Echvi_2944 0.90 +0.8
3,522,738 - Echvi_2944 0.90 +0.7
3,522,738 - Echvi_2944 0.90 +2.2
3,522,839 + +1.0
3,522,869 - +0.9
3,522,884 + -0.2
3,522,910 + -0.6
3,522,953 - +1.2
3,522,999 + Echvi_2945 0.13 -0.4
3,523,000 - Echvi_2945 0.13 +0.6
3,523,017 + Echvi_2945 0.16 +0.4
3,523,018 - Echvi_2945 0.17 +1.5
3,523,144 - Echvi_2945 0.41 +0.5
3,523,370 + Echvi_2945 0.85 +0.2
3,523,499 + -0.9
3,523,500 - +0.2
3,523,541 + -0.6
3,523,932 - Echvi_2946 0.48 -1.6
3,524,317 + Echvi_2946 0.86 +0.7
3,524,346 - Echvi_2946 0.89 +1.4
3,524,402 + +0.1
3,524,402 + -1.8
3,524,403 - -1.5
3,524,406 + -0.5
3,524,407 - -1.1
3,524,407 - +0.3
3,524,407 - -0.4
3,524,410 + -2.2

Or see this region's nucleotide sequence