Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0636

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0634 and Echvi_0635 are separated by 92 nucleotidesEchvi_0635 and Echvi_0636 overlap by 11 nucleotidesEchvi_0636 and Echvi_0637 are separated by 24 nucleotides Echvi_0634: Echvi_0634 - Parvulin-like peptidyl-prolyl isomerase, at 717,351 to 719,366 _0634 Echvi_0635: Echvi_0635 - Anti-sigma regulatory factor (Ser/Thr protein kinase), at 719,459 to 719,887 _0635 Echvi_0636: Echvi_0636 - anti-anti-sigma factor, at 719,877 to 720,221 _0636 Echvi_0637: Echvi_0637 - Serine phosphatase RsbU, regulator of sigma subunit, at 720,246 to 722,312 _0637 Position (kb) 719 720 721Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 718.946 kb on + strand, within Echvi_0634at 718.946 kb on + strand, within Echvi_0634at 718.947 kb on - strand, within Echvi_0634at 718.947 kb on - strand, within Echvi_0634at 718.947 kb on - strand, within Echvi_0634at 718.947 kb on - strand, within Echvi_0634at 718.947 kb on - strand, within Echvi_0634at 718.981 kb on + strand, within Echvi_0634at 718.982 kb on - strand, within Echvi_0634at 719.025 kb on - strand, within Echvi_0634at 719.026 kb on + strand, within Echvi_0634at 719.038 kb on - strand, within Echvi_0634at 719.123 kb on + strand, within Echvi_0634at 719.123 kb on + strand, within Echvi_0634at 719.125 kb on + strand, within Echvi_0634at 719.125 kb on + strand, within Echvi_0634at 719.130 kb on + strand, within Echvi_0634at 719.220 kb on - strandat 719.220 kb on - strandat 719.264 kb on - strandat 719.281 kb on - strandat 719.328 kb on + strandat 719.329 kb on - strandat 719.353 kb on + strandat 719.353 kb on + strandat 719.353 kb on + strandat 719.354 kb on - strandat 719.357 kb on + strandat 719.369 kb on + strandat 719.369 kb on + strandat 719.369 kb on + strandat 719.373 kb on + strandat 719.374 kb on - strandat 719.374 kb on - strandat 719.374 kb on - strandat 719.374 kb on - strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.440 kb on - strandat 719.440 kb on - strandat 719.440 kb on - strandat 719.453 kb on + strandat 719.873 kb on + strandat 719.873 kb on + strandat 719.912 kb on + strand, within Echvi_0636at 719.912 kb on + strand, within Echvi_0636at 719.958 kb on + strandat 719.959 kb on - strand, within Echvi_0636at 719.967 kb on + strand, within Echvi_0636at 719.967 kb on + strand, within Echvi_0636at 719.968 kb on - strand, within Echvi_0636at 720.028 kb on + strand, within Echvi_0636at 720.035 kb on + strand, within Echvi_0636at 720.036 kb on - strand, within Echvi_0636at 720.045 kb on + strand, within Echvi_0636at 720.046 kb on - strand, within Echvi_0636at 720.062 kb on + strand, within Echvi_0636at 720.063 kb on - strand, within Echvi_0636at 720.069 kb on + strand, within Echvi_0636at 720.069 kb on + strand, within Echvi_0636at 720.070 kb on - strand, within Echvi_0636at 720.124 kb on - strand, within Echvi_0636at 720.124 kb on - strand, within Echvi_0636at 720.149 kb on + strand, within Echvi_0636at 720.149 kb on + strand, within Echvi_0636at 720.185 kb on + strand, within Echvi_0636at 720.185 kb on + strand, within Echvi_0636at 720.186 kb on - strand, within Echvi_0636at 720.186 kb on - strand, within Echvi_0636at 720.186 kb on - strand, within Echvi_0636at 720.186 kb on - strand, within Echvi_0636at 720.209 kb on + strandat 720.210 kb on - strandat 720.221 kb on + strandat 720.221 kb on + strandat 720.221 kb on + strandat 720.222 kb on - strandat 720.222 kb on - strandat 720.222 kb on - strandat 720.229 kb on + strandat 720.230 kb on - strandat 720.231 kb on + strandat 720.231 kb on + strandat 720.231 kb on + strandat 720.231 kb on + strandat 720.231 kb on + strandat 720.231 kb on + strandat 720.283 kb on + strandat 720.284 kb on - strandat 720.284 kb on - strandat 720.336 kb on + strandat 720.337 kb on - strandat 720.372 kb on - strandat 720.372 kb on - strandat 720.373 kb on + strandat 720.373 kb on + strandat 720.373 kb on + strandat 720.373 kb on + strandat 720.373 kb on + strandat 720.373 kb on + strandat 720.377 kb on + strandat 720.377 kb on + strandat 720.377 kb on + strandat 720.385 kb on - strandat 720.403 kb on + strandat 720.441 kb on - strandat 720.452 kb on + strandat 720.454 kb on + strand, within Echvi_0637at 720.454 kb on + strand, within Echvi_0637at 720.454 kb on + strand, within Echvi_0637at 720.454 kb on + strand, within Echvi_0637at 720.454 kb on + strand, within Echvi_0637at 720.455 kb on - strand, within Echvi_0637at 720.514 kb on + strand, within Echvi_0637at 720.518 kb on + strand, within Echvi_0637at 720.589 kb on + strand, within Echvi_0637at 720.589 kb on + strand, within Echvi_0637at 720.592 kb on + strand, within Echvi_0637at 720.627 kb on - strand, within Echvi_0637at 720.627 kb on - strand, within Echvi_0637at 720.656 kb on - strand, within Echvi_0637at 720.656 kb on - strand, within Echvi_0637at 720.659 kb on - strand, within Echvi_0637at 720.663 kb on - strand, within Echvi_0637at 720.663 kb on - strand, within Echvi_0637at 720.751 kb on - strand, within Echvi_0637at 720.751 kb on - strand, within Echvi_0637at 720.751 kb on - strand, within Echvi_0637at 720.788 kb on + strand, within Echvi_0637at 720.789 kb on - strand, within Echvi_0637at 720.789 kb on - strand, within Echvi_0637at 720.868 kb on + strand, within Echvi_0637at 720.872 kb on - strand, within Echvi_0637at 720.882 kb on + strand, within Echvi_0637at 720.929 kb on + strand, within Echvi_0637at 720.993 kb on - strand, within Echvi_0637at 721.077 kb on - strand, within Echvi_0637at 721.079 kb on + strand, within Echvi_0637at 721.079 kb on + strand, within Echvi_0637at 721.079 kb on + strand, within Echvi_0637at 721.079 kb on + strand, within Echvi_0637at 721.115 kb on + strand, within Echvi_0637at 721.116 kb on - strand, within Echvi_0637at 721.145 kb on + strand, within Echvi_0637at 721.145 kb on + strand, within Echvi_0637at 721.145 kb on + strand, within Echvi_0637at 721.146 kb on - strand, within Echvi_0637at 721.146 kb on - strand, within Echvi_0637at 721.146 kb on - strand, within Echvi_0637at 721.150 kb on - strand, within Echvi_0637

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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718,946 + Echvi_0634 0.79 -0.3
718,946 + Echvi_0634 0.79 -2.3
718,947 - Echvi_0634 0.79 -0.6
718,947 - Echvi_0634 0.79 -0.8
718,947 - Echvi_0634 0.79 -0.1
718,947 - Echvi_0634 0.79 -1.4
718,947 - Echvi_0634 0.79 -1.2
718,981 + Echvi_0634 0.81 -1.4
718,982 - Echvi_0634 0.81 -0.3
719,025 - Echvi_0634 0.83 -0.7
719,026 + Echvi_0634 0.83 -0.3
719,038 - Echvi_0634 0.84 -0.7
719,123 + Echvi_0634 0.88 -2.8
719,123 + Echvi_0634 0.88 -1.6
719,125 + Echvi_0634 0.88 -0.7
719,125 + Echvi_0634 0.88 -1.7
719,130 + Echvi_0634 0.88 +1.1
719,220 - -0.4
719,220 - -1.3
719,264 - -0.7
719,281 - -0.8
719,328 + -0.9
719,329 - -1.0
719,353 + -0.0
719,353 + -0.5
719,353 + -1.7
719,354 - +0.0
719,357 + -1.2
719,369 + -1.6
719,369 + -0.6
719,369 + -1.7
719,373 + +0.0
719,374 - -0.1
719,374 - -1.4
719,374 - +0.4
719,374 - +0.7
719,439 + -0.8
719,439 + +0.5
719,439 + -0.5
719,439 + +0.1
719,439 + -1.0
719,439 + -0.0
719,439 + +1.6
719,439 + +0.7
719,440 - +0.5
719,440 - -1.2
719,440 - +1.4
719,453 + -1.5
719,873 + +1.1
719,873 + +0.9
719,912 + Echvi_0636 0.10 -0.3
719,912 + Echvi_0636 0.10 +2.1
719,958 + +1.0
719,959 - Echvi_0636 0.24 -2.9
719,967 + Echvi_0636 0.26 -2.6
719,967 + Echvi_0636 0.26 -1.7
719,968 - Echvi_0636 0.26 -1.7
720,028 + Echvi_0636 0.44 -1.1
720,035 + Echvi_0636 0.46 -0.9
720,036 - Echvi_0636 0.46 -3.0
720,045 + Echvi_0636 0.49 -0.9
720,046 - Echvi_0636 0.49 -2.7
720,062 + Echvi_0636 0.54 +0.1
720,063 - Echvi_0636 0.54 -0.9
720,069 + Echvi_0636 0.56 -0.8
720,069 + Echvi_0636 0.56 -0.4
720,070 - Echvi_0636 0.56 -2.0
720,124 - Echvi_0636 0.72 -1.6
720,124 - Echvi_0636 0.72 -2.3
720,149 + Echvi_0636 0.79 -0.4
720,149 + Echvi_0636 0.79 -1.3
720,185 + Echvi_0636 0.89 -2.3
720,185 + Echvi_0636 0.89 -1.3
720,186 - Echvi_0636 0.90 -0.7
720,186 - Echvi_0636 0.90 -2.2
720,186 - Echvi_0636 0.90 -0.9
720,186 - Echvi_0636 0.90 -1.0
720,209 + -1.1
720,210 - +1.6
720,221 + -2.3
720,221 + -0.5
720,221 + -1.3
720,222 - +0.4
720,222 - -0.6
720,222 - -1.3
720,229 + -1.3
720,230 - -2.3
720,231 + -2.0
720,231 + -1.0
720,231 + -0.9
720,231 + -0.2
720,231 + -1.3
720,231 + -1.0
720,283 + -0.6
720,284 - -0.1
720,284 - -3.3
720,336 + -1.6
720,337 - -2.5
720,372 - -1.2
720,372 - -1.6
720,373 + -1.4
720,373 + -1.5
720,373 + -2.8
720,373 + -2.0
720,373 + -1.2
720,373 + +0.3
720,377 + -0.7
720,377 + -0.8
720,377 + -0.4
720,385 - +0.3
720,403 + -1.4
720,441 - -3.8
720,452 + -1.6
720,454 + Echvi_0637 0.10 +2.0
720,454 + Echvi_0637 0.10 +0.6
720,454 + Echvi_0637 0.10 -1.7
720,454 + Echvi_0637 0.10 -0.6
720,454 + Echvi_0637 0.10 -1.6
720,455 - Echvi_0637 0.10 -3.5
720,514 + Echvi_0637 0.13 -3.6
720,518 + Echvi_0637 0.13 -0.6
720,589 + Echvi_0637 0.17 -0.7
720,589 + Echvi_0637 0.17 -2.7
720,592 + Echvi_0637 0.17 -0.5
720,627 - Echvi_0637 0.18 -1.4
720,627 - Echvi_0637 0.18 +0.6
720,656 - Echvi_0637 0.20 -2.3
720,656 - Echvi_0637 0.20 -1.4
720,659 - Echvi_0637 0.20 -0.6
720,663 - Echvi_0637 0.20 +1.0
720,663 - Echvi_0637 0.20 -1.9
720,751 - Echvi_0637 0.24 -2.9
720,751 - Echvi_0637 0.24 -0.6
720,751 - Echvi_0637 0.24 -3.0
720,788 + Echvi_0637 0.26 -0.5
720,789 - Echvi_0637 0.26 -1.6
720,789 - Echvi_0637 0.26 -0.6
720,868 + Echvi_0637 0.30 -2.1
720,872 - Echvi_0637 0.30 -3.6
720,882 + Echvi_0637 0.31 -2.2
720,929 + Echvi_0637 0.33 -2.7
720,993 - Echvi_0637 0.36 -2.0
721,077 - Echvi_0637 0.40 -1.7
721,079 + Echvi_0637 0.40 -3.3
721,079 + Echvi_0637 0.40 -0.8
721,079 + Echvi_0637 0.40 -2.7
721,079 + Echvi_0637 0.40 -1.3
721,115 + Echvi_0637 0.42 -1.3
721,116 - Echvi_0637 0.42 -1.8
721,145 + Echvi_0637 0.43 -2.0
721,145 + Echvi_0637 0.43 -1.4
721,145 + Echvi_0637 0.43 -2.5
721,146 - Echvi_0637 0.44 +1.2
721,146 - Echvi_0637 0.44 -1.5
721,146 - Echvi_0637 0.44 -1.1
721,150 - Echvi_0637 0.44 -0.8

Or see this region's nucleotide sequence