Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4348 and EX28DRAFT_4349 are separated by 72 nucleotides EX28DRAFT_4349 and EX28DRAFT_4350 are separated by 111 nucleotides EX28DRAFT_4350 and EX28DRAFT_4351 are separated by 11 nucleotides
EX28DRAFT_4348: EX28DRAFT_4348 - oxygen-independent coproporphyrinogen III oxidase, at 9,912 to 11,285
_4348
EX28DRAFT_4349: EX28DRAFT_4349 - hypothetical protein, at 11,358 to 11,468
_4349
EX28DRAFT_4350: EX28DRAFT_4350 - nitrogen regulation protein NR(I), at 11,580 to 12,992
_4350
EX28DRAFT_4351: EX28DRAFT_4351 - Signal transduction histidine kinase, nitrogen specific, at 13,004 to 14,053
_4351
Position (kb) 11
12
13 Strain fitness (log2 ratio) -1
0
1 at 11.216 kb on + strand at 11.284 kb on - strand at 11.311 kb on + strand at 11.311 kb on + strand at 11.345 kb on + strand at 11.364 kb on - strand at 11.448 kb on - strand, within EX28DRAFT_4349 at 11.448 kb on - strand, within EX28DRAFT_4349 at 11.500 kb on + strand at 11.500 kb on + strand at 11.501 kb on - strand at 11.501 kb on - strand at 11.501 kb on - strand at 11.501 kb on - strand at 11.520 kb on + strand at 11.575 kb on + strand at 12.042 kb on - strand, within EX28DRAFT_4350 at 12.956 kb on + strand at 13.040 kb on - strand at 13.273 kb on + strand, within EX28DRAFT_4351 at 13.321 kb on + strand, within EX28DRAFT_4351 at 13.392 kb on - strand, within EX28DRAFT_4351 at 13.554 kb on + strand, within EX28DRAFT_4351 at 13.555 kb on - strand, within EX28DRAFT_4351 at 13.882 kb on - strand, within EX28DRAFT_4351 at 13.919 kb on - strand, within EX28DRAFT_4351 at 13.919 kb on - strand, within EX28DRAFT_4351
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 11,216 + -0.9 11,284 - +0.5 11,311 + -0.2 11,311 + +0.3 11,345 + +0.1 11,364 - +0.4 11,448 - EX28DRAFT_4349 0.81 -0.4 11,448 - EX28DRAFT_4349 0.81 +0.1 11,500 + +1.4 11,500 + +0.5 11,501 - +0.5 11,501 - -0.0 11,501 - -0.1 11,501 - +0.1 11,520 + +0.4 11,575 + +0.3 12,042 - EX28DRAFT_4350 0.33 -0.6 12,956 + -0.8 13,040 - +1.4 13,273 + EX28DRAFT_4351 0.26 +0.4 13,321 + EX28DRAFT_4351 0.30 -1.1 13,392 - EX28DRAFT_4351 0.37 -0.2 13,554 + EX28DRAFT_4351 0.52 -0.9 13,555 - EX28DRAFT_4351 0.52 -0.7 13,882 - EX28DRAFT_4351 0.84 +0.4 13,919 - EX28DRAFT_4351 0.87 -0.3 13,919 - EX28DRAFT_4351 0.87 -0.6
Or see this region's nucleotide sequence