Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4165

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4164 and EX28DRAFT_4165 are separated by 278 nucleotidesEX28DRAFT_4165 and EX28DRAFT_4166 are separated by 106 nucleotidesEX28DRAFT_4166 and EX28DRAFT_4167 overlap by 11 nucleotidesEX28DRAFT_4167 and EX28DRAFT_4168 are separated by 101 nucleotides EX28DRAFT_4164: EX28DRAFT_4164 - Major Facilitator Superfamily, at 146,150 to 147,334 _4164 EX28DRAFT_4165: EX28DRAFT_4165 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 147,613 to 148,185 _4165 EX28DRAFT_4166: EX28DRAFT_4166 - Protein of unknown function (DUF2559), at 148,292 to 148,459 _4166 EX28DRAFT_4167: EX28DRAFT_4167 - Protein involved in cell division, at 148,449 to 149,042 _4167 EX28DRAFT_4168: EX28DRAFT_4168 - SIR2-like domain, at 149,144 to 152,260 _4168 Position (kb) 147 148 149Strain fitness (log2 ratio) -2 -1 0 1 2 3at 146.641 kb on - strand, within EX28DRAFT_4164at 146.682 kb on + strand, within EX28DRAFT_4164at 146.682 kb on + strand, within EX28DRAFT_4164at 146.683 kb on - strand, within EX28DRAFT_4164at 146.817 kb on + strand, within EX28DRAFT_4164at 146.818 kb on - strand, within EX28DRAFT_4164at 146.818 kb on - strand, within EX28DRAFT_4164at 146.838 kb on + strand, within EX28DRAFT_4164at 146.838 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.962 kb on - strand, within EX28DRAFT_4164at 147.157 kb on + strand, within EX28DRAFT_4164at 147.158 kb on - strand, within EX28DRAFT_4164at 147.328 kb on + strandat 147.329 kb on - strandat 147.586 kb on + strandat 147.586 kb on + strandat 147.587 kb on - strandat 147.589 kb on - strandat 147.805 kb on + strand, within EX28DRAFT_4165at 147.805 kb on + strand, within EX28DRAFT_4165at 147.844 kb on - strand, within EX28DRAFT_4165at 147.904 kb on - strand, within EX28DRAFT_4165at 147.904 kb on - strand, within EX28DRAFT_4165at 147.975 kb on + strand, within EX28DRAFT_4165at 148.222 kb on + strandat 148.223 kb on - strandat 148.223 kb on - strandat 148.254 kb on + strandat 148.254 kb on + strandat 148.254 kb on + strandat 148.254 kb on + strandat 148.255 kb on - strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.256 kb on + strandat 148.257 kb on - strandat 148.257 kb on - strandat 148.343 kb on - strand, within EX28DRAFT_4166at 148.343 kb on - strand, within EX28DRAFT_4166at 148.346 kb on - strand, within EX28DRAFT_4166at 148.408 kb on - strand, within EX28DRAFT_4166at 148.416 kb on + strand, within EX28DRAFT_4166at 148.416 kb on + strand, within EX28DRAFT_4166at 148.417 kb on - strand, within EX28DRAFT_4166at 148.417 kb on - strand, within EX28DRAFT_4166at 148.417 kb on - strand, within EX28DRAFT_4166at 148.448 kb on + strandat 148.449 kb on - strandat 148.483 kb on - strandat 148.489 kb on - strandat 148.594 kb on + strand, within EX28DRAFT_4167at 148.595 kb on - strand, within EX28DRAFT_4167at 148.595 kb on - strand, within EX28DRAFT_4167at 148.692 kb on - strand, within EX28DRAFT_4167at 148.695 kb on + strand, within EX28DRAFT_4167at 148.696 kb on - strand, within EX28DRAFT_4167at 148.706 kb on + strand, within EX28DRAFT_4167at 148.728 kb on + strand, within EX28DRAFT_4167at 148.729 kb on - strand, within EX28DRAFT_4167at 148.729 kb on - strand, within EX28DRAFT_4167at 148.730 kb on + strand, within EX28DRAFT_4167at 148.792 kb on + strand, within EX28DRAFT_4167at 148.796 kb on + strand, within EX28DRAFT_4167at 148.949 kb on + strand, within EX28DRAFT_4167at 148.949 kb on + strand, within EX28DRAFT_4167at 148.949 kb on + strand, within EX28DRAFT_4167at 148.949 kb on + strand, within EX28DRAFT_4167at 148.949 kb on + strand, within EX28DRAFT_4167at 148.950 kb on - strand, within EX28DRAFT_4167at 148.950 kb on - strand, within EX28DRAFT_4167at 148.950 kb on - strand, within EX28DRAFT_4167at 148.950 kb on - strand, within EX28DRAFT_4167at 148.950 kb on - strand, within EX28DRAFT_4167at 148.950 kb on - strand, within EX28DRAFT_4167at 149.012 kb on - strandat 149.012 kb on - strandat 149.040 kb on + strandat 149.040 kb on + strandat 149.040 kb on + strandat 149.041 kb on - strandat 149.047 kb on + strandat 149.048 kb on - strandat 149.048 kb on - strandat 149.048 kb on - strandat 149.158 kb on + strandat 149.159 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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146,641 - EX28DRAFT_4164 0.41 -0.7
146,682 + EX28DRAFT_4164 0.45 +0.4
146,682 + EX28DRAFT_4164 0.45 +0.5
146,683 - EX28DRAFT_4164 0.45 -0.6
146,817 + EX28DRAFT_4164 0.56 -0.4
146,818 - EX28DRAFT_4164 0.56 +0.2
146,818 - EX28DRAFT_4164 0.56 +3.7
146,838 + EX28DRAFT_4164 0.58 +0.5
146,838 + EX28DRAFT_4164 0.58 -0.9
146,961 + EX28DRAFT_4164 0.68 -0.1
146,961 + EX28DRAFT_4164 0.68 +0.5
146,961 + EX28DRAFT_4164 0.68 -0.2
146,961 + EX28DRAFT_4164 0.68 +1.0
146,961 + EX28DRAFT_4164 0.68 +0.1
146,961 + EX28DRAFT_4164 0.68 -1.9
146,962 - EX28DRAFT_4164 0.69 +0.6
147,157 + EX28DRAFT_4164 0.85 +1.4
147,158 - EX28DRAFT_4164 0.85 +0.1
147,328 + -0.1
147,329 - +1.0
147,586 + +0.4
147,586 + -0.2
147,587 - -0.2
147,589 - -0.2
147,805 + EX28DRAFT_4165 0.34 +0.2
147,805 + EX28DRAFT_4165 0.34 +0.3
147,844 - EX28DRAFT_4165 0.40 +0.1
147,904 - EX28DRAFT_4165 0.51 +0.2
147,904 - EX28DRAFT_4165 0.51 +0.1
147,975 + EX28DRAFT_4165 0.63 +0.4
148,222 + +0.2
148,223 - -0.5
148,223 - +0.7
148,254 + +0.0
148,254 + +0.4
148,254 + -0.2
148,254 + +0.9
148,255 - -0.4
148,256 + -0.2
148,256 + -0.2
148,256 + +0.7
148,256 + +1.2
148,256 + -0.2
148,256 + +0.5
148,256 + -0.0
148,256 + +0.0
148,257 - +0.1
148,257 - +0.9
148,343 - EX28DRAFT_4166 0.30 +0.5
148,343 - EX28DRAFT_4166 0.30 -0.0
148,346 - EX28DRAFT_4166 0.32 -1.2
148,408 - EX28DRAFT_4166 0.69 +0.5
148,416 + EX28DRAFT_4166 0.74 -0.6
148,416 + EX28DRAFT_4166 0.74 +0.4
148,417 - EX28DRAFT_4166 0.74 +1.0
148,417 - EX28DRAFT_4166 0.74 +0.5
148,417 - EX28DRAFT_4166 0.74 +0.4
148,448 + +0.1
148,449 - -0.2
148,483 - -0.1
148,489 - -0.2
148,594 + EX28DRAFT_4167 0.24 -1.0
148,595 - EX28DRAFT_4167 0.25 -1.8
148,595 - EX28DRAFT_4167 0.25 -0.3
148,692 - EX28DRAFT_4167 0.41 -0.7
148,695 + EX28DRAFT_4167 0.41 -0.2
148,696 - EX28DRAFT_4167 0.42 -0.4
148,706 + EX28DRAFT_4167 0.43 +0.2
148,728 + EX28DRAFT_4167 0.47 -0.8
148,729 - EX28DRAFT_4167 0.47 +0.2
148,729 - EX28DRAFT_4167 0.47 -0.6
148,730 + EX28DRAFT_4167 0.47 -0.1
148,792 + EX28DRAFT_4167 0.58 +0.2
148,796 + EX28DRAFT_4167 0.58 +0.4
148,949 + EX28DRAFT_4167 0.84 -0.2
148,949 + EX28DRAFT_4167 0.84 -2.4
148,949 + EX28DRAFT_4167 0.84 +0.0
148,949 + EX28DRAFT_4167 0.84 +0.3
148,949 + EX28DRAFT_4167 0.84 +0.6
148,950 - EX28DRAFT_4167 0.84 -0.6
148,950 - EX28DRAFT_4167 0.84 +2.4
148,950 - EX28DRAFT_4167 0.84 -1.0
148,950 - EX28DRAFT_4167 0.84 +0.8
148,950 - EX28DRAFT_4167 0.84 +0.4
148,950 - EX28DRAFT_4167 0.84 -0.3
149,012 - -0.2
149,012 - +0.8
149,040 + +0.1
149,040 + +0.1
149,040 + +2.1
149,041 - +0.3
149,047 + +0.2
149,048 - -0.1
149,048 - +1.4
149,048 - -0.1
149,158 + +0.3
149,159 - -0.2

Or see this region's nucleotide sequence