Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4153

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4151 and EX28DRAFT_4152 are separated by 286 nucleotidesEX28DRAFT_4152 and EX28DRAFT_4153 are separated by 57 nucleotidesEX28DRAFT_4153 and EX28DRAFT_4154 are separated by 92 nucleotides EX28DRAFT_4151: EX28DRAFT_4151 - type IV pilus secretin (or competence protein) PilQ, at 131,884 to 133,044 _4151 EX28DRAFT_4152: EX28DRAFT_4152 - shikimate kinase (EC 2.7.1.71), at 133,331 to 133,852 _4152 EX28DRAFT_4153: EX28DRAFT_4153 - 3-dehydroquinate synthase (EC 4.2.3.4), at 133,910 to 134,998 _4153 EX28DRAFT_4154: EX28DRAFT_4154 - Uncharacterized protein conserved in bacteria, at 135,091 to 136,407 _4154 Position (kb) 133 134 135Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 133.005 kb on - strandat 133.015 kb on - strandat 133.015 kb on - strandat 133.018 kb on - strandat 133.111 kb on + strandat 133.112 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.145 kb on - strandat 133.151 kb on + strandat 133.151 kb on + strandat 133.152 kb on - strandat 133.152 kb on - strandat 133.152 kb on - strandat 133.159 kb on + strandat 133.181 kb on - strandat 133.237 kb on + strandat 133.238 kb on - strandat 133.244 kb on + strandat 133.244 kb on + strandat 133.315 kb on + strandat 133.318 kb on + strandat 133.349 kb on - strandat 133.488 kb on + strand, within EX28DRAFT_4152at 133.634 kb on + strand, within EX28DRAFT_4152at 133.828 kb on + strandat 133.862 kb on + strandat 133.864 kb on + strandat 133.864 kb on + strandat 133.865 kb on - strandat 133.865 kb on - strandat 133.866 kb on + strandat 133.866 kb on + strandat 133.866 kb on + strandat 133.867 kb on - strandat 133.891 kb on + strandat 133.927 kb on + strandat 133.943 kb on - strandat 134.479 kb on + strand, within EX28DRAFT_4153at 134.518 kb on + strand, within EX28DRAFT_4153at 134.519 kb on - strand, within EX28DRAFT_4153at 134.650 kb on + strand, within EX28DRAFT_4153at 134.852 kb on + strand, within EX28DRAFT_4153at 135.068 kb on + strandat 135.379 kb on - strand, within EX28DRAFT_4154at 135.671 kb on + strand, within EX28DRAFT_4154at 135.867 kb on + strand, within EX28DRAFT_4154at 135.867 kb on + strand, within EX28DRAFT_4154

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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133,005 - +0.0
133,015 - -0.3
133,015 - +0.4
133,018 - -1.3
133,111 + -0.8
133,112 - -0.3
133,117 - +0.5
133,117 - +0.3
133,117 - +0.5
133,117 - -0.6
133,117 - -0.3
133,117 - -2.8
133,145 - +1.4
133,151 + -1.2
133,151 + +0.5
133,152 - -0.5
133,152 - +0.4
133,152 - -0.7
133,159 + +0.6
133,181 - +0.4
133,237 + -1.0
133,238 - -0.0
133,244 + -0.6
133,244 + -0.5
133,315 + -0.8
133,318 + +0.6
133,349 - -0.6
133,488 + EX28DRAFT_4152 0.30 -0.3
133,634 + EX28DRAFT_4152 0.58 +3.0
133,828 + +1.0
133,862 + +0.0
133,864 + -1.4
133,864 + +0.4
133,865 - +0.6
133,865 - +0.4
133,866 + -0.1
133,866 + -0.9
133,866 + -0.3
133,867 - +1.4
133,891 + -0.1
133,927 + +0.4
133,943 - -1.6
134,479 + EX28DRAFT_4153 0.52 -2.1
134,518 + EX28DRAFT_4153 0.56 -2.9
134,519 - EX28DRAFT_4153 0.56 -2.9
134,650 + EX28DRAFT_4153 0.68 -2.4
134,852 + EX28DRAFT_4153 0.87 +0.4
135,068 + +1.3
135,379 - EX28DRAFT_4154 0.22 -1.4
135,671 + EX28DRAFT_4154 0.44 +0.1
135,867 + EX28DRAFT_4154 0.59 +0.8
135,867 + EX28DRAFT_4154 0.59 +0.0

Or see this region's nucleotide sequence