Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4110

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4109 and EX28DRAFT_4110 are separated by 4 nucleotidesEX28DRAFT_4110 and EX28DRAFT_4111 are separated by 72 nucleotidesEX28DRAFT_4111 and EX28DRAFT_4112 are separated by 167 nucleotides EX28DRAFT_4109: EX28DRAFT_4109 - Arabinose efflux permease, at 80,995 to 82,212 _4109 EX28DRAFT_4110: EX28DRAFT_4110 - hypothetical protein, at 82,217 to 82,774 _4110 EX28DRAFT_4111: EX28DRAFT_4111 - conserved hypothetical integral membrane protein, at 82,847 to 83,512 _4111 EX28DRAFT_4112: EX28DRAFT_4112 - Predicted redox protein, regulator of disulfide bond formation, at 83,680 to 83,922 _4112 Position (kb) 82 83Strain fitness (log2 ratio) -2 -1 0 1 2at 81.293 kb on - strand, within EX28DRAFT_4109at 81.293 kb on - strand, within EX28DRAFT_4109at 81.473 kb on - strand, within EX28DRAFT_4109at 81.727 kb on + strand, within EX28DRAFT_4109at 81.774 kb on + strand, within EX28DRAFT_4109at 81.870 kb on - strand, within EX28DRAFT_4109at 81.983 kb on + strand, within EX28DRAFT_4109at 82.027 kb on + strand, within EX28DRAFT_4109at 82.027 kb on + strand, within EX28DRAFT_4109at 82.028 kb on - strand, within EX28DRAFT_4109at 82.044 kb on + strand, within EX28DRAFT_4109at 82.111 kb on + strandat 82.111 kb on + strandat 82.111 kb on + strandat 82.111 kb on + strandat 82.112 kb on - strandat 82.237 kb on + strandat 82.238 kb on - strandat 82.418 kb on - strand, within EX28DRAFT_4110at 82.712 kb on - strand, within EX28DRAFT_4110at 82.756 kb on - strandat 82.756 kb on - strandat 82.760 kb on - strandat 82.880 kb on - strandat 82.904 kb on - strandat 82.965 kb on + strand, within EX28DRAFT_4111at 83.050 kb on + strand, within EX28DRAFT_4111at 83.165 kb on - strand, within EX28DRAFT_4111at 83.241 kb on + strand, within EX28DRAFT_4111at 83.241 kb on + strand, within EX28DRAFT_4111at 83.241 kb on + strand, within EX28DRAFT_4111at 83.242 kb on - strand, within EX28DRAFT_4111at 83.242 kb on - strand, within EX28DRAFT_4111at 83.263 kb on - strand, within EX28DRAFT_4111at 83.427 kb on + strand, within EX28DRAFT_4111at 83.428 kb on - strand, within EX28DRAFT_4111at 83.428 kb on - strand, within EX28DRAFT_4111at 83.512 kb on + strandat 83.512 kb on + strandat 83.513 kb on - strandat 83.650 kb on + strandat 83.651 kb on - strandat 83.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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81,293 - EX28DRAFT_4109 0.24 +0.1
81,293 - EX28DRAFT_4109 0.24 -0.2
81,473 - EX28DRAFT_4109 0.39 +2.0
81,727 + EX28DRAFT_4109 0.60 +0.5
81,774 + EX28DRAFT_4109 0.64 -0.2
81,870 - EX28DRAFT_4109 0.72 -0.2
81,983 + EX28DRAFT_4109 0.81 -0.2
82,027 + EX28DRAFT_4109 0.85 +0.5
82,027 + EX28DRAFT_4109 0.85 +1.4
82,028 - EX28DRAFT_4109 0.85 -0.4
82,044 + EX28DRAFT_4109 0.86 -0.4
82,111 + -0.2
82,111 + -0.1
82,111 + -0.4
82,111 + -0.0
82,112 - -0.1
82,237 + +1.4
82,238 - +1.4
82,418 - EX28DRAFT_4110 0.36 -1.6
82,712 - EX28DRAFT_4110 0.89 -0.7
82,756 - -0.2
82,756 - -0.3
82,760 - -0.8
82,880 - +0.5
82,904 - +0.4
82,965 + EX28DRAFT_4111 0.18 +1.4
83,050 + EX28DRAFT_4111 0.30 -0.4
83,165 - EX28DRAFT_4111 0.48 +0.5
83,241 + EX28DRAFT_4111 0.59 +0.5
83,241 + EX28DRAFT_4111 0.59 -0.8
83,241 + EX28DRAFT_4111 0.59 +0.6
83,242 - EX28DRAFT_4111 0.59 -0.3
83,242 - EX28DRAFT_4111 0.59 -0.9
83,263 - EX28DRAFT_4111 0.62 -0.1
83,427 + EX28DRAFT_4111 0.87 -2.7
83,428 - EX28DRAFT_4111 0.87 +0.1
83,428 - EX28DRAFT_4111 0.87 +0.1
83,512 + -0.4
83,512 + -0.2
83,513 - +0.3
83,650 + +0.1
83,651 - -0.7
83,651 - -0.6

Or see this region's nucleotide sequence