Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3138 and EX28DRAFT_3139 are separated by 336 nucleotides EX28DRAFT_3139 and EX28DRAFT_3140 are separated by 408 nucleotides
EX28DRAFT_3138: EX28DRAFT_3138 - Methyl-accepting chemotaxis protein, at 437,310 to 438,869
_3138
EX28DRAFT_3139: EX28DRAFT_3139 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 439,206 to 440,726
_3139
EX28DRAFT_3140: EX28DRAFT_3140 - diamine aminotransferase apoenzyme (EC 2.6.1.29), at 441,135 to 442,541
_3140
Position (kb) 439
440
441 Strain fitness (log2 ratio) -1
0
1 at 438.275 kb on + strand, within EX28DRAFT_3138 at 438.309 kb on - strand, within EX28DRAFT_3138 at 438.392 kb on + strand, within EX28DRAFT_3138 at 438.497 kb on - strand, within EX28DRAFT_3138 at 438.631 kb on + strand, within EX28DRAFT_3138 at 438.632 kb on - strand, within EX28DRAFT_3138 at 438.632 kb on - strand, within EX28DRAFT_3138 at 438.632 kb on - strand, within EX28DRAFT_3138 at 438.735 kb on - strand at 438.861 kb on + strand at 438.979 kb on - strand at 439.079 kb on + strand at 439.200 kb on - strand at 439.424 kb on + strand, within EX28DRAFT_3139 at 439.424 kb on + strand, within EX28DRAFT_3139 at 439.473 kb on + strand, within EX28DRAFT_3139 at 439.473 kb on + strand, within EX28DRAFT_3139 at 439.473 kb on + strand, within EX28DRAFT_3139 at 439.474 kb on - strand, within EX28DRAFT_3139 at 439.503 kb on - strand, within EX28DRAFT_3139 at 439.628 kb on + strand, within EX28DRAFT_3139 at 440.393 kb on + strand, within EX28DRAFT_3139 at 440.393 kb on + strand, within EX28DRAFT_3139 at 440.393 kb on + strand, within EX28DRAFT_3139 at 440.393 kb on + strand, within EX28DRAFT_3139 at 440.393 kb on + strand, within EX28DRAFT_3139 at 440.394 kb on - strand, within EX28DRAFT_3139 at 440.394 kb on - strand, within EX28DRAFT_3139 at 440.394 kb on - strand, within EX28DRAFT_3139 at 440.394 kb on - strand, within EX28DRAFT_3139 at 440.394 kb on - strand, within EX28DRAFT_3139 at 440.394 kb on - strand, within EX28DRAFT_3139 at 440.395 kb on + strand, within EX28DRAFT_3139 at 440.395 kb on + strand, within EX28DRAFT_3139 at 440.396 kb on - strand, within EX28DRAFT_3139 at 440.396 kb on - strand, within EX28DRAFT_3139 at 440.564 kb on + strand, within EX28DRAFT_3139 at 440.565 kb on - strand, within EX28DRAFT_3139 at 440.565 kb on - strand, within EX28DRAFT_3139 at 440.641 kb on + strand at 440.641 kb on + strand at 440.661 kb on - strand at 440.661 kb on - strand at 440.667 kb on + strand at 440.668 kb on - strand at 440.668 kb on - strand at 440.693 kb on - strand at 440.710 kb on + strand at 440.710 kb on + strand at 440.710 kb on + strand at 440.710 kb on + strand at 440.711 kb on - strand at 440.747 kb on + strand at 440.759 kb on - strand at 440.797 kb on + strand at 440.798 kb on - strand at 440.804 kb on - strand at 440.906 kb on + strand at 440.986 kb on - strand at 440.986 kb on - strand at 441.008 kb on - strand at 441.037 kb on + strand at 441.117 kb on + strand at 441.117 kb on + strand at 441.117 kb on + strand at 441.122 kb on - strand at 441.172 kb on + strand at 441.172 kb on + strand at 441.282 kb on + strand, within EX28DRAFT_3140 at 441.287 kb on + strand, within EX28DRAFT_3140 at 441.380 kb on + strand, within EX28DRAFT_3140 at 441.589 kb on - strand, within EX28DRAFT_3140 at 441.589 kb on - strand, within EX28DRAFT_3140 at 441.600 kb on - strand, within EX28DRAFT_3140 at 441.600 kb on - strand, within EX28DRAFT_3140 at 441.708 kb on - strand, within EX28DRAFT_3140
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 438,275 + EX28DRAFT_3138 0.62 +0.4 438,309 - EX28DRAFT_3138 0.64 -0.1 438,392 + EX28DRAFT_3138 0.69 -0.5 438,497 - EX28DRAFT_3138 0.76 -0.5 438,631 + EX28DRAFT_3138 0.85 -0.2 438,632 - EX28DRAFT_3138 0.85 +0.4 438,632 - EX28DRAFT_3138 0.85 -0.2 438,632 - EX28DRAFT_3138 0.85 -0.6 438,735 - -0.1 438,861 + +0.5 438,979 - +0.4 439,079 + -0.2 439,200 - +0.1 439,424 + EX28DRAFT_3139 0.14 -0.1 439,424 + EX28DRAFT_3139 0.14 -0.1 439,473 + EX28DRAFT_3139 0.18 -0.5 439,473 + EX28DRAFT_3139 0.18 -0.2 439,473 + EX28DRAFT_3139 0.18 -0.3 439,474 - EX28DRAFT_3139 0.18 -0.3 439,503 - EX28DRAFT_3139 0.20 +0.1 439,628 + EX28DRAFT_3139 0.28 +0.1 440,393 + EX28DRAFT_3139 0.78 -0.0 440,393 + EX28DRAFT_3139 0.78 -0.3 440,393 + EX28DRAFT_3139 0.78 +0.0 440,393 + EX28DRAFT_3139 0.78 +1.3 440,393 + EX28DRAFT_3139 0.78 +0.0 440,394 - EX28DRAFT_3139 0.78 +0.5 440,394 - EX28DRAFT_3139 0.78 -1.3 440,394 - EX28DRAFT_3139 0.78 -0.9 440,394 - EX28DRAFT_3139 0.78 +0.0 440,394 - EX28DRAFT_3139 0.78 -0.7 440,394 - EX28DRAFT_3139 0.78 -0.3 440,395 + EX28DRAFT_3139 0.78 -1.0 440,395 + EX28DRAFT_3139 0.78 -1.2 440,396 - EX28DRAFT_3139 0.78 -0.6 440,396 - EX28DRAFT_3139 0.78 +0.6 440,564 + EX28DRAFT_3139 0.89 -0.7 440,565 - EX28DRAFT_3139 0.89 -0.2 440,565 - EX28DRAFT_3139 0.89 -0.3 440,641 + +0.7 440,641 + +0.5 440,661 - -0.0 440,661 - -0.1 440,667 + +0.2 440,668 - +1.3 440,668 - -1.5 440,693 - +1.3 440,710 + +0.4 440,710 + +0.9 440,710 + -0.3 440,710 + -0.1 440,711 - -0.2 440,747 + -0.7 440,759 - -0.1 440,797 + +0.3 440,798 - +0.5 440,804 - +0.0 440,906 + -1.1 440,986 - +0.5 440,986 - +1.1 441,008 - +0.2 441,037 + +0.5 441,117 + +0.9 441,117 + +0.1 441,117 + -0.4 441,122 - -0.1 441,172 + -0.2 441,172 + -0.7 441,282 + EX28DRAFT_3140 0.10 -0.7 441,287 + EX28DRAFT_3140 0.11 -0.3 441,380 + EX28DRAFT_3140 0.17 -1.1 441,589 - EX28DRAFT_3140 0.32 -0.2 441,589 - EX28DRAFT_3140 0.32 +0.7 441,600 - EX28DRAFT_3140 0.33 +0.3 441,600 - EX28DRAFT_3140 0.33 -0.2 441,708 - EX28DRAFT_3140 0.41 +0.0
Or see this region's nucleotide sequence