Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3064 and EX28DRAFT_3065 overlap by 4 nucleotides EX28DRAFT_3065 and EX28DRAFT_3066 overlap by 4 nucleotides EX28DRAFT_3066 and EX28DRAFT_3067 are separated by 386 nucleotides
EX28DRAFT_3064: EX28DRAFT_3064 - ABC-type Fe3+-siderophore transport system, permease component, at 373,010 to 374,050
_3064
EX28DRAFT_3065: EX28DRAFT_3065 - ABC-type Fe3+-siderophore transport system, permease component, at 374,047 to 375,030
_3065
EX28DRAFT_3066: EX28DRAFT_3066 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 375,027 to 375,839
_3066
EX28DRAFT_3067: EX28DRAFT_3067 - TonB-dependent siderophore receptor, at 376,226 to 378,367
_3067
Position (kb) 375
376 Strain fitness (log2 ratio) -2
-1
0
1
2 at 374.106 kb on + strand at 374.971 kb on - strand at 375.095 kb on + strand at 375.095 kb on + strand at 375.095 kb on + strand at 375.095 kb on + strand at 375.095 kb on + strand at 375.096 kb on - strand at 375.096 kb on - strand at 375.096 kb on - strand at 375.096 kb on - strand at 375.096 kb on - strand at 375.096 kb on - strand at 375.096 kb on - strand at 375.159 kb on + strand, within EX28DRAFT_3066 at 375.184 kb on - strand, within EX28DRAFT_3066 at 375.205 kb on + strand, within EX28DRAFT_3066 at 375.343 kb on + strand, within EX28DRAFT_3066 at 375.343 kb on + strand, within EX28DRAFT_3066 at 375.344 kb on - strand, within EX28DRAFT_3066 at 375.344 kb on - strand, within EX28DRAFT_3066 at 375.344 kb on - strand, within EX28DRAFT_3066 at 375.344 kb on - strand, within EX28DRAFT_3066 at 375.684 kb on + strand, within EX28DRAFT_3066 at 375.729 kb on + strand, within EX28DRAFT_3066 at 375.758 kb on + strand at 375.759 kb on - strand at 375.853 kb on + strand at 375.854 kb on - strand at 375.857 kb on - strand at 375.870 kb on - strand at 376.048 kb on + strand at 376.119 kb on + strand at 376.119 kb on + strand at 376.157 kb on + strand at 376.158 kb on - strand at 376.205 kb on + strand at 376.218 kb on + strand at 376.218 kb on + strand at 376.218 kb on + strand at 376.218 kb on + strand at 376.218 kb on + strand at 376.219 kb on - strand at 376.219 kb on - strand at 376.219 kb on - strand at 376.219 kb on - strand at 376.219 kb on - strand at 376.219 kb on - strand at 376.224 kb on + strand at 376.224 kb on + strand at 376.224 kb on + strand at 376.225 kb on - strand at 376.225 kb on - strand at 376.225 kb on - strand at 376.225 kb on - strand at 376.231 kb on + strand at 376.232 kb on - strand at 376.328 kb on - strand at 376.366 kb on + strand at 376.405 kb on + strand at 376.406 kb on - strand at 376.406 kb on - strand at 376.406 kb on - strand at 376.519 kb on + strand, within EX28DRAFT_3067 at 376.520 kb on + strand, within EX28DRAFT_3067 at 376.521 kb on - strand, within EX28DRAFT_3067 at 376.561 kb on + strand, within EX28DRAFT_3067 at 376.786 kb on + strand, within EX28DRAFT_3067 at 376.786 kb on + strand, within EX28DRAFT_3067
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 374,106 + -0.4 374,971 - -0.1 375,095 + +1.2 375,095 + +1.6 375,095 + -0.7 375,095 + -0.0 375,095 + -1.0 375,096 - -1.9 375,096 - -0.6 375,096 - +1.8 375,096 - +0.7 375,096 - +0.5 375,096 - +1.2 375,096 - +0.6 375,159 + EX28DRAFT_3066 0.16 +0.6 375,184 - EX28DRAFT_3066 0.19 +0.5 375,205 + EX28DRAFT_3066 0.22 -0.3 375,343 + EX28DRAFT_3066 0.39 +0.8 375,343 + EX28DRAFT_3066 0.39 +1.2 375,344 - EX28DRAFT_3066 0.39 -0.2 375,344 - EX28DRAFT_3066 0.39 -0.6 375,344 - EX28DRAFT_3066 0.39 +0.1 375,344 - EX28DRAFT_3066 0.39 -0.1 375,684 + EX28DRAFT_3066 0.81 +0.1 375,729 + EX28DRAFT_3066 0.86 -0.3 375,758 + -0.0 375,759 - -0.1 375,853 + +0.1 375,854 - -1.6 375,857 - -0.3 375,870 - -1.0 376,048 + -0.1 376,119 + -0.0 376,119 + -0.0 376,157 + -1.8 376,158 - +1.2 376,205 + -0.3 376,218 + -0.3 376,218 + -0.9 376,218 + -0.3 376,218 + -0.3 376,218 + -1.2 376,219 - +0.0 376,219 - +0.0 376,219 - -0.8 376,219 - +0.1 376,219 - -0.3 376,219 - -0.2 376,224 + -0.3 376,224 + -0.4 376,224 + +0.7 376,225 - -1.8 376,225 - -0.8 376,225 - +0.4 376,225 - +0.4 376,231 + +0.1 376,232 - -0.3 376,328 - -0.3 376,366 + -0.5 376,405 + +0.2 376,406 - +1.0 376,406 - +0.8 376,406 - -0.1 376,519 + EX28DRAFT_3067 0.14 -1.0 376,520 + EX28DRAFT_3067 0.14 +0.4 376,521 - EX28DRAFT_3067 0.14 -0.3 376,561 + EX28DRAFT_3067 0.16 +1.4 376,786 + EX28DRAFT_3067 0.26 -0.1 376,786 + EX28DRAFT_3067 0.26 -1.1
Or see this region's nucleotide sequence