Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2792 and EX28DRAFT_2793 are separated by 12 nucleotides EX28DRAFT_2793 and EX28DRAFT_2794 are separated by 14 nucleotides EX28DRAFT_2794 and EX28DRAFT_2795 are separated by 67 nucleotides EX28DRAFT_2795 and EX28DRAFT_2796 are separated by 63 nucleotides
EX28DRAFT_2792: EX28DRAFT_2792 - PTS system, glucitol/sorbitol-specific, IIBC component, at 95,611 to 96,570
_2792
EX28DRAFT_2793: EX28DRAFT_2793 - Phosphotransferase system sorbitol-specific component IIA, at 96,583 to 96,945
_2793
EX28DRAFT_2794: EX28DRAFT_2794 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 96,960 to 97,739
_2794
EX28DRAFT_2795: EX28DRAFT_2795 - Glucitol operon activator, at 97,807 to 98,166
_2795
EX28DRAFT_2796: EX28DRAFT_2796 - transcriptional regulator, DeoR family, at 98,230 to 99,003
_2796
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 96.011 kb on - strand, within EX28DRAFT_2792 at 96.150 kb on + strand, within EX28DRAFT_2792 at 96.406 kb on - strand, within EX28DRAFT_2792 at 96.558 kb on + strand at 96.568 kb on + strand at 96.595 kb on + strand at 96.943 kb on + strand at 96.943 kb on + strand at 97.000 kb on + strand at 97.000 kb on + strand at 97.218 kb on + strand, within EX28DRAFT_2794 at 97.409 kb on + strand, within EX28DRAFT_2794 at 97.409 kb on + strand, within EX28DRAFT_2794 at 97.409 kb on + strand, within EX28DRAFT_2794 at 97.410 kb on - strand, within EX28DRAFT_2794 at 97.558 kb on - strand, within EX28DRAFT_2794 at 97.602 kb on + strand, within EX28DRAFT_2794 at 97.602 kb on + strand, within EX28DRAFT_2794 at 97.603 kb on - strand, within EX28DRAFT_2794 at 97.603 kb on - strand, within EX28DRAFT_2794 at 97.603 kb on - strand, within EX28DRAFT_2794 at 97.603 kb on - strand, within EX28DRAFT_2794 at 97.638 kb on + strand, within EX28DRAFT_2794 at 97.639 kb on - strand, within EX28DRAFT_2794 at 97.690 kb on - strand at 97.953 kb on + strand, within EX28DRAFT_2795 at 98.025 kb on + strand, within EX28DRAFT_2795 at 98.026 kb on - strand, within EX28DRAFT_2795 at 98.087 kb on + strand, within EX28DRAFT_2795 at 98.214 kb on - strand at 98.311 kb on + strand, within EX28DRAFT_2796 at 98.337 kb on - strand, within EX28DRAFT_2796 at 98.352 kb on - strand, within EX28DRAFT_2796 at 98.387 kb on - strand, within EX28DRAFT_2796
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 96,011 - EX28DRAFT_2792 0.42 -0.4 96,150 + EX28DRAFT_2792 0.56 +0.1 96,406 - EX28DRAFT_2792 0.83 +0.3 96,558 + -0.4 96,568 + -0.3 96,595 + +0.8 96,943 + -0.5 96,943 + -0.4 97,000 + +0.5 97,000 + -0.5 97,218 + EX28DRAFT_2794 0.33 +1.1 97,409 + EX28DRAFT_2794 0.58 +0.3 97,409 + EX28DRAFT_2794 0.58 -0.5 97,409 + EX28DRAFT_2794 0.58 -0.1 97,410 - EX28DRAFT_2794 0.58 +1.1 97,558 - EX28DRAFT_2794 0.77 -0.0 97,602 + EX28DRAFT_2794 0.82 +0.9 97,602 + EX28DRAFT_2794 0.82 +0.4 97,603 - EX28DRAFT_2794 0.82 +0.7 97,603 - EX28DRAFT_2794 0.82 -0.2 97,603 - EX28DRAFT_2794 0.82 +0.9 97,603 - EX28DRAFT_2794 0.82 +0.0 97,638 + EX28DRAFT_2794 0.87 +0.7 97,639 - EX28DRAFT_2794 0.87 +0.3 97,690 - -0.2 97,953 + EX28DRAFT_2795 0.41 -1.8 98,025 + EX28DRAFT_2795 0.61 +0.4 98,026 - EX28DRAFT_2795 0.61 -0.7 98,087 + EX28DRAFT_2795 0.78 -3.4 98,214 - -1.0 98,311 + EX28DRAFT_2796 0.10 -0.4 98,337 - EX28DRAFT_2796 0.14 -1.0 98,352 - EX28DRAFT_2796 0.16 -0.9 98,387 - EX28DRAFT_2796 0.20 -0.1
Or see this region's nucleotide sequence