Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2512

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2511 and EX28DRAFT_2512 are separated by 81 nucleotidesEX28DRAFT_2512 and EX28DRAFT_2513 overlap by 4 nucleotidesEX28DRAFT_2513 and EX28DRAFT_2514 are separated by 261 nucleotidesEX28DRAFT_2514 and EX28DRAFT_2515 are separated by 170 nucleotides EX28DRAFT_2511: EX28DRAFT_2511 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 2,543,295 to 2,544,716 _2511 EX28DRAFT_2512: EX28DRAFT_2512 - hypothetical protein, at 2,544,798 to 2,545,013 _2512 EX28DRAFT_2513: EX28DRAFT_2513 - hypothetical protein, at 2,545,010 to 2,545,261 _2513 EX28DRAFT_2514: EX28DRAFT_2514 - RNA, at 2,545,523 to 2,545,619 _2514 EX28DRAFT_2515: EX28DRAFT_2515 - O-6-methylguanine DNA methyltransferase, at 2,545,790 to 2,546,101 _2515 Position (kb) 2544 2545 2546Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2544.056 kb on + strand, within EX28DRAFT_2511at 2544.209 kb on - strand, within EX28DRAFT_2511at 2544.357 kb on - strand, within EX28DRAFT_2511at 2544.539 kb on - strand, within EX28DRAFT_2511at 2544.601 kb on + strandat 2544.601 kb on + strandat 2544.601 kb on + strandat 2544.601 kb on + strandat 2544.605 kb on + strandat 2544.714 kb on + strandat 2544.725 kb on + strandat 2544.767 kb on + strandat 2544.800 kb on - strandat 2544.816 kb on - strandat 2544.936 kb on + strand, within EX28DRAFT_2512at 2544.936 kb on + strand, within EX28DRAFT_2512at 2544.937 kb on - strand, within EX28DRAFT_2512at 2544.949 kb on + strand, within EX28DRAFT_2512at 2544.982 kb on + strand, within EX28DRAFT_2512at 2544.982 kb on + strand, within EX28DRAFT_2512at 2545.130 kb on + strand, within EX28DRAFT_2513at 2545.130 kb on + strand, within EX28DRAFT_2513at 2545.287 kb on + strandat 2545.326 kb on + strandat 2545.354 kb on - strandat 2545.354 kb on - strandat 2545.355 kb on + strandat 2545.430 kb on - strandat 2545.784 kb on - strandat 2545.789 kb on + strandat 2545.822 kb on - strand, within EX28DRAFT_2515at 2545.866 kb on - strand, within EX28DRAFT_2515at 2545.866 kb on - strand, within EX28DRAFT_2515at 2545.946 kb on - strand, within EX28DRAFT_2515

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,544,056 + EX28DRAFT_2511 0.54 +0.2
2,544,209 - EX28DRAFT_2511 0.64 -0.7
2,544,357 - EX28DRAFT_2511 0.75 +0.5
2,544,539 - EX28DRAFT_2511 0.87 +0.4
2,544,601 + +0.1
2,544,601 + +0.5
2,544,601 + +0.1
2,544,601 + +0.2
2,544,605 + -0.4
2,544,714 + -0.8
2,544,725 + +1.1
2,544,767 + +1.1
2,544,800 - +0.7
2,544,816 - +0.2
2,544,936 + EX28DRAFT_2512 0.64 -0.7
2,544,936 + EX28DRAFT_2512 0.64 -0.3
2,544,937 - EX28DRAFT_2512 0.64 -2.1
2,544,949 + EX28DRAFT_2512 0.70 -0.7
2,544,982 + EX28DRAFT_2512 0.85 -1.5
2,544,982 + EX28DRAFT_2512 0.85 -0.9
2,545,130 + EX28DRAFT_2513 0.48 -0.3
2,545,130 + EX28DRAFT_2513 0.48 +0.4
2,545,287 + +0.4
2,545,326 + +4.4
2,545,354 - +0.0
2,545,354 - +0.1
2,545,355 + +0.0
2,545,430 - -0.3
2,545,784 - +0.1
2,545,789 + -0.8
2,545,822 - EX28DRAFT_2515 0.10 +1.1
2,545,866 - EX28DRAFT_2515 0.24 +0.2
2,545,866 - EX28DRAFT_2515 0.24 -0.6
2,545,946 - EX28DRAFT_2515 0.50 +0.2

Or see this region's nucleotide sequence