Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2424

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2423 and EX28DRAFT_2424 are separated by 226 nucleotidesEX28DRAFT_2424 and EX28DRAFT_2425 are separated by 19 nucleotidesEX28DRAFT_2425 and EX28DRAFT_2426 are separated by 120 nucleotides EX28DRAFT_2423: EX28DRAFT_2423 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 2,449,460 to 2,450,527 _2423 EX28DRAFT_2424: EX28DRAFT_2424 - transcriptional regulator, TetR family, at 2,450,754 to 2,451,344 _2424 EX28DRAFT_2425: EX28DRAFT_2425 - Uncharacterized protein conserved in bacteria, at 2,451,364 to 2,451,702 _2425 EX28DRAFT_2426: EX28DRAFT_2426 - Nitroreductase, at 2,451,823 to 2,452,476 _2426 Position (kb) 2450 2451 2452Strain fitness (log2 ratio) -2 -1 0 1 2at 2449.801 kb on - strand, within EX28DRAFT_2423at 2449.801 kb on - strand, within EX28DRAFT_2423at 2449.801 kb on - strand, within EX28DRAFT_2423at 2449.978 kb on - strand, within EX28DRAFT_2423at 2450.067 kb on + strand, within EX28DRAFT_2423at 2450.067 kb on + strand, within EX28DRAFT_2423at 2450.084 kb on + strand, within EX28DRAFT_2423at 2450.172 kb on + strand, within EX28DRAFT_2423at 2450.173 kb on - strand, within EX28DRAFT_2423at 2450.223 kb on + strand, within EX28DRAFT_2423at 2450.380 kb on + strand, within EX28DRAFT_2423at 2450.382 kb on + strand, within EX28DRAFT_2423at 2450.402 kb on - strand, within EX28DRAFT_2423at 2450.491 kb on + strandat 2450.502 kb on - strandat 2450.522 kb on - strandat 2450.645 kb on - strandat 2450.652 kb on + strandat 2450.730 kb on - strandat 2451.005 kb on + strand, within EX28DRAFT_2424at 2451.027 kb on + strand, within EX28DRAFT_2424at 2451.027 kb on + strand, within EX28DRAFT_2424at 2451.027 kb on + strand, within EX28DRAFT_2424at 2451.028 kb on - strand, within EX28DRAFT_2424at 2451.047 kb on + strand, within EX28DRAFT_2424at 2451.175 kb on + strand, within EX28DRAFT_2424at 2451.176 kb on - strand, within EX28DRAFT_2424at 2451.179 kb on + strand, within EX28DRAFT_2424at 2451.342 kb on + strandat 2451.342 kb on + strandat 2451.432 kb on + strand, within EX28DRAFT_2425at 2451.745 kb on + strandat 2451.745 kb on + strandat 2451.828 kb on + strandat 2451.859 kb on - strandat 2451.929 kb on - strand, within EX28DRAFT_2426at 2451.971 kb on + strand, within EX28DRAFT_2426at 2451.972 kb on - strand, within EX28DRAFT_2426at 2452.024 kb on + strand, within EX28DRAFT_2426at 2452.025 kb on - strand, within EX28DRAFT_2426at 2452.025 kb on - strand, within EX28DRAFT_2426at 2452.025 kb on - strand, within EX28DRAFT_2426at 2452.025 kb on - strand, within EX28DRAFT_2426at 2452.025 kb on - strand, within EX28DRAFT_2426at 2452.190 kb on - strand, within EX28DRAFT_2426at 2452.190 kb on - strand, within EX28DRAFT_2426at 2452.190 kb on - strand, within EX28DRAFT_2426

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
remove
2,449,801 - EX28DRAFT_2423 0.32 +0.1
2,449,801 - EX28DRAFT_2423 0.32 -0.2
2,449,801 - EX28DRAFT_2423 0.32 -0.1
2,449,978 - EX28DRAFT_2423 0.49 +0.9
2,450,067 + EX28DRAFT_2423 0.57 +0.6
2,450,067 + EX28DRAFT_2423 0.57 -1.0
2,450,084 + EX28DRAFT_2423 0.58 -0.1
2,450,172 + EX28DRAFT_2423 0.67 +2.0
2,450,173 - EX28DRAFT_2423 0.67 +0.1
2,450,223 + EX28DRAFT_2423 0.71 +1.5
2,450,380 + EX28DRAFT_2423 0.86 +0.3
2,450,382 + EX28DRAFT_2423 0.86 +0.0
2,450,402 - EX28DRAFT_2423 0.88 +0.2
2,450,491 + -0.0
2,450,502 - -0.8
2,450,522 - +0.3
2,450,645 - -0.7
2,450,652 + +0.7
2,450,730 - -2.3
2,451,005 + EX28DRAFT_2424 0.42 -1.3
2,451,027 + EX28DRAFT_2424 0.46 -1.4
2,451,027 + EX28DRAFT_2424 0.46 -1.0
2,451,027 + EX28DRAFT_2424 0.46 -1.0
2,451,028 - EX28DRAFT_2424 0.46 -0.5
2,451,047 + EX28DRAFT_2424 0.50 -1.0
2,451,175 + EX28DRAFT_2424 0.71 -0.4
2,451,176 - EX28DRAFT_2424 0.71 -0.5
2,451,179 + EX28DRAFT_2424 0.72 +1.0
2,451,342 + +0.0
2,451,342 + -1.5
2,451,432 + EX28DRAFT_2425 0.20 -0.3
2,451,745 + +0.0
2,451,745 + +1.1
2,451,828 + +0.4
2,451,859 - +0.1
2,451,929 - EX28DRAFT_2426 0.16 -1.8
2,451,971 + EX28DRAFT_2426 0.23 +0.6
2,451,972 - EX28DRAFT_2426 0.23 +1.0
2,452,024 + EX28DRAFT_2426 0.31 -0.2
2,452,025 - EX28DRAFT_2426 0.31 -0.1
2,452,025 - EX28DRAFT_2426 0.31 +0.1
2,452,025 - EX28DRAFT_2426 0.31 -0.3
2,452,025 - EX28DRAFT_2426 0.31 +1.0
2,452,025 - EX28DRAFT_2426 0.31 -0.9
2,452,190 - EX28DRAFT_2426 0.56 +1.3
2,452,190 - EX28DRAFT_2426 0.56 +0.3
2,452,190 - EX28DRAFT_2426 0.56 -0.3

Or see this region's nucleotide sequence