Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2082

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2081 and EX28DRAFT_2082 overlap by 1 nucleotidesEX28DRAFT_2082 and EX28DRAFT_2083 are separated by 17 nucleotidesEX28DRAFT_2083 and EX28DRAFT_2084 are separated by 258 nucleotides EX28DRAFT_2081: EX28DRAFT_2081 - Type II secretory pathway, component ExeA (predicted ATPase), at 2,106,935 to 2,108,509 _2081 EX28DRAFT_2082: EX28DRAFT_2082 - hypothetical protein, at 2,108,509 to 2,109,123 _2082 EX28DRAFT_2083: EX28DRAFT_2083 - hypothetical protein, at 2,109,141 to 2,109,764 _2083 EX28DRAFT_2084: EX28DRAFT_2084 - Negative regulator of beta-lactamase expression, at 2,110,023 to 2,110,853 _2084 Position (kb) 2108 2109 2110Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2107.509 kb on - strand, within EX28DRAFT_2081at 2107.509 kb on - strand, within EX28DRAFT_2081at 2107.762 kb on - strand, within EX28DRAFT_2081at 2107.891 kb on + strand, within EX28DRAFT_2081at 2107.931 kb on + strand, within EX28DRAFT_2081at 2107.931 kb on + strand, within EX28DRAFT_2081at 2107.932 kb on - strand, within EX28DRAFT_2081at 2107.933 kb on + strand, within EX28DRAFT_2081at 2107.934 kb on - strand, within EX28DRAFT_2081at 2108.006 kb on - strand, within EX28DRAFT_2081at 2108.090 kb on + strand, within EX28DRAFT_2081at 2108.090 kb on + strand, within EX28DRAFT_2081at 2108.090 kb on + strand, within EX28DRAFT_2081at 2108.090 kb on + strand, within EX28DRAFT_2081at 2108.091 kb on - strand, within EX28DRAFT_2081at 2108.091 kb on - strand, within EX28DRAFT_2081at 2108.110 kb on - strand, within EX28DRAFT_2081at 2108.174 kb on - strand, within EX28DRAFT_2081at 2108.195 kb on + strand, within EX28DRAFT_2081at 2108.408 kb on - strandat 2108.421 kb on + strandat 2108.452 kb on - strandat 2108.470 kb on + strandat 2108.470 kb on + strandat 2108.470 kb on + strandat 2108.470 kb on + strandat 2108.471 kb on - strandat 2108.471 kb on - strandat 2108.473 kb on - strandat 2108.473 kb on - strandat 2108.473 kb on - strandat 2108.520 kb on + strandat 2108.520 kb on + strandat 2108.605 kb on - strand, within EX28DRAFT_2082at 2108.605 kb on - strand, within EX28DRAFT_2082at 2108.749 kb on + strand, within EX28DRAFT_2082at 2108.749 kb on + strand, within EX28DRAFT_2082at 2108.750 kb on - strand, within EX28DRAFT_2082at 2108.750 kb on - strand, within EX28DRAFT_2082at 2108.750 kb on - strand, within EX28DRAFT_2082at 2108.756 kb on - strand, within EX28DRAFT_2082at 2108.892 kb on + strand, within EX28DRAFT_2082at 2108.906 kb on + strand, within EX28DRAFT_2082at 2109.416 kb on + strand, within EX28DRAFT_2083at 2109.416 kb on + strand, within EX28DRAFT_2083at 2109.512 kb on - strand, within EX28DRAFT_2083at 2109.512 kb on - strand, within EX28DRAFT_2083at 2109.515 kb on + strand, within EX28DRAFT_2083at 2109.516 kb on - strand, within EX28DRAFT_2083at 2109.554 kb on + strand, within EX28DRAFT_2083at 2109.579 kb on - strand, within EX28DRAFT_2083at 2109.635 kb on + strand, within EX28DRAFT_2083at 2109.635 kb on + strand, within EX28DRAFT_2083at 2109.659 kb on + strand, within EX28DRAFT_2083at 2109.884 kb on - strandat 2109.901 kb on - strandat 2109.952 kb on + strandat 2109.996 kb on + strandat 2109.996 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,107,509 - EX28DRAFT_2081 0.36 -0.5
2,107,509 - EX28DRAFT_2081 0.36 +0.1
2,107,762 - EX28DRAFT_2081 0.53 -0.4
2,107,891 + EX28DRAFT_2081 0.61 +0.9
2,107,931 + EX28DRAFT_2081 0.63 -0.5
2,107,931 + EX28DRAFT_2081 0.63 -0.8
2,107,932 - EX28DRAFT_2081 0.63 -0.1
2,107,933 + EX28DRAFT_2081 0.63 +0.3
2,107,934 - EX28DRAFT_2081 0.63 -0.8
2,108,006 - EX28DRAFT_2081 0.68 -0.2
2,108,090 + EX28DRAFT_2081 0.73 -0.2
2,108,090 + EX28DRAFT_2081 0.73 -1.0
2,108,090 + EX28DRAFT_2081 0.73 +2.0
2,108,090 + EX28DRAFT_2081 0.73 +0.7
2,108,091 - EX28DRAFT_2081 0.73 -0.1
2,108,091 - EX28DRAFT_2081 0.73 -0.1
2,108,110 - EX28DRAFT_2081 0.75 +1.2
2,108,174 - EX28DRAFT_2081 0.79 +0.4
2,108,195 + EX28DRAFT_2081 0.80 -0.3
2,108,408 - +0.6
2,108,421 + -0.5
2,108,452 - -2.9
2,108,470 + -0.1
2,108,470 + -2.0
2,108,470 + +0.0
2,108,470 + +0.0
2,108,471 - +0.3
2,108,471 - -0.1
2,108,473 - -0.5
2,108,473 - +0.9
2,108,473 - +0.2
2,108,520 + -0.2
2,108,520 + +0.5
2,108,605 - EX28DRAFT_2082 0.16 +0.1
2,108,605 - EX28DRAFT_2082 0.16 +0.3
2,108,749 + EX28DRAFT_2082 0.39 -0.3
2,108,749 + EX28DRAFT_2082 0.39 -1.3
2,108,750 - EX28DRAFT_2082 0.39 -1.1
2,108,750 - EX28DRAFT_2082 0.39 -0.6
2,108,750 - EX28DRAFT_2082 0.39 -0.8
2,108,756 - EX28DRAFT_2082 0.40 -0.1
2,108,892 + EX28DRAFT_2082 0.62 -1.7
2,108,906 + EX28DRAFT_2082 0.65 -0.4
2,109,416 + EX28DRAFT_2083 0.44 -3.0
2,109,416 + EX28DRAFT_2083 0.44 +0.0
2,109,512 - EX28DRAFT_2083 0.59 -0.5
2,109,512 - EX28DRAFT_2083 0.59 -0.7
2,109,515 + EX28DRAFT_2083 0.60 -0.4
2,109,516 - EX28DRAFT_2083 0.60 +1.0
2,109,554 + EX28DRAFT_2083 0.66 -0.7
2,109,579 - EX28DRAFT_2083 0.70 +0.6
2,109,635 + EX28DRAFT_2083 0.79 -0.1
2,109,635 + EX28DRAFT_2083 0.79 +0.3
2,109,659 + EX28DRAFT_2083 0.83 +0.1
2,109,884 - +0.9
2,109,901 - -0.1
2,109,952 + +0.9
2,109,996 + -0.4
2,109,996 + -0.0

Or see this region's nucleotide sequence