Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2080

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2079 and EX28DRAFT_2080 are separated by 13 nucleotidesEX28DRAFT_2080 and EX28DRAFT_2081 are separated by 258 nucleotides EX28DRAFT_2079: EX28DRAFT_2079 - type II secretion system protein D, at 2,103,965 to 2,105,890 _2079 EX28DRAFT_2080: EX28DRAFT_2080 - type II secretion system protein C, at 2,105,904 to 2,106,676 _2080 EX28DRAFT_2081: EX28DRAFT_2081 - Type II secretory pathway, component ExeA (predicted ATPase), at 2,106,935 to 2,108,509 _2081 Position (kb) 2105 2106 2107Strain fitness (log2 ratio) -1 0 1at 2105.076 kb on + strand, within EX28DRAFT_2079at 2105.640 kb on + strand, within EX28DRAFT_2079at 2105.640 kb on + strand, within EX28DRAFT_2079at 2105.673 kb on + strand, within EX28DRAFT_2079at 2105.691 kb on - strand, within EX28DRAFT_2079at 2105.697 kb on + strand, within EX28DRAFT_2079at 2105.698 kb on - strandat 2105.698 kb on - strandat 2105.750 kb on - strandat 2105.753 kb on - strandat 2105.843 kb on + strandat 2105.896 kb on + strandat 2105.903 kb on - strandat 2106.051 kb on + strand, within EX28DRAFT_2080at 2106.107 kb on + strand, within EX28DRAFT_2080at 2106.142 kb on - strand, within EX28DRAFT_2080at 2106.183 kb on + strand, within EX28DRAFT_2080at 2106.428 kb on + strand, within EX28DRAFT_2080at 2106.744 kb on - strandat 2106.881 kb on - strandat 2106.938 kb on + strandat 2106.939 kb on - strandat 2107.091 kb on + strandat 2107.092 kb on - strandat 2107.187 kb on + strand, within EX28DRAFT_2081at 2107.188 kb on - strand, within EX28DRAFT_2081at 2107.188 kb on - strand, within EX28DRAFT_2081at 2107.188 kb on - strand, within EX28DRAFT_2081at 2107.292 kb on - strand, within EX28DRAFT_2081at 2107.359 kb on + strand, within EX28DRAFT_2081at 2107.360 kb on - strand, within EX28DRAFT_2081at 2107.463 kb on - strand, within EX28DRAFT_2081at 2107.508 kb on + strand, within EX28DRAFT_2081at 2107.508 kb on + strand, within EX28DRAFT_2081at 2107.509 kb on - strand, within EX28DRAFT_2081at 2107.509 kb on - strand, within EX28DRAFT_2081

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,105,076 + EX28DRAFT_2079 0.58 +0.1
2,105,640 + EX28DRAFT_2079 0.87 -0.9
2,105,640 + EX28DRAFT_2079 0.87 -0.8
2,105,673 + EX28DRAFT_2079 0.89 +0.3
2,105,691 - EX28DRAFT_2079 0.90 -0.7
2,105,697 + EX28DRAFT_2079 0.90 +0.4
2,105,698 - +0.1
2,105,698 - +0.0
2,105,750 - -0.6
2,105,753 - -0.2
2,105,843 + -0.7
2,105,896 + +0.5
2,105,903 - -0.4
2,106,051 + EX28DRAFT_2080 0.19 -0.5
2,106,107 + EX28DRAFT_2080 0.26 -0.5
2,106,142 - EX28DRAFT_2080 0.31 -1.0
2,106,183 + EX28DRAFT_2080 0.36 -0.3
2,106,428 + EX28DRAFT_2080 0.68 -0.6
2,106,744 - +0.3
2,106,881 - +1.5
2,106,938 + -0.5
2,106,939 - -1.7
2,107,091 + -0.3
2,107,092 - -0.9
2,107,187 + EX28DRAFT_2081 0.16 -0.1
2,107,188 - EX28DRAFT_2081 0.16 +0.4
2,107,188 - EX28DRAFT_2081 0.16 +0.0
2,107,188 - EX28DRAFT_2081 0.16 -1.3
2,107,292 - EX28DRAFT_2081 0.23 -1.2
2,107,359 + EX28DRAFT_2081 0.27 +0.3
2,107,360 - EX28DRAFT_2081 0.27 -0.6
2,107,463 - EX28DRAFT_2081 0.34 +0.5
2,107,508 + EX28DRAFT_2081 0.36 -0.1
2,107,508 + EX28DRAFT_2081 0.36 -0.1
2,107,509 - EX28DRAFT_2081 0.36 -0.5
2,107,509 - EX28DRAFT_2081 0.36 +0.1

Or see this region's nucleotide sequence