Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2079 and EX28DRAFT_2080 are separated by 13 nucleotides EX28DRAFT_2080 and EX28DRAFT_2081 are separated by 258 nucleotides
EX28DRAFT_2079: EX28DRAFT_2079 - type II secretion system protein D, at 2,103,965 to 2,105,890
_2079
EX28DRAFT_2080: EX28DRAFT_2080 - type II secretion system protein C, at 2,105,904 to 2,106,676
_2080
EX28DRAFT_2081: EX28DRAFT_2081 - Type II secretory pathway, component ExeA (predicted ATPase), at 2,106,935 to 2,108,509
_2081
Position (kb)
2105
2106
2107 Strain fitness (log2 ratio)
-1
0
1 at 2105.076 kb on + strand, within EX28DRAFT_2079 at 2105.640 kb on + strand, within EX28DRAFT_2079 at 2105.640 kb on + strand, within EX28DRAFT_2079 at 2105.673 kb on + strand, within EX28DRAFT_2079 at 2105.691 kb on - strand, within EX28DRAFT_2079 at 2105.697 kb on + strand, within EX28DRAFT_2079 at 2105.698 kb on - strand at 2105.698 kb on - strand at 2105.750 kb on - strand at 2105.753 kb on - strand at 2105.843 kb on + strand at 2105.896 kb on + strand at 2105.903 kb on - strand at 2106.051 kb on + strand, within EX28DRAFT_2080 at 2106.107 kb on + strand, within EX28DRAFT_2080 at 2106.142 kb on - strand, within EX28DRAFT_2080 at 2106.183 kb on + strand, within EX28DRAFT_2080 at 2106.428 kb on + strand, within EX28DRAFT_2080 at 2106.744 kb on - strand at 2106.881 kb on - strand at 2106.938 kb on + strand at 2106.939 kb on - strand at 2107.091 kb on + strand at 2107.092 kb on - strand at 2107.187 kb on + strand, within EX28DRAFT_2081 at 2107.188 kb on - strand, within EX28DRAFT_2081 at 2107.188 kb on - strand, within EX28DRAFT_2081 at 2107.188 kb on - strand, within EX28DRAFT_2081 at 2107.292 kb on - strand, within EX28DRAFT_2081 at 2107.359 kb on + strand, within EX28DRAFT_2081 at 2107.360 kb on - strand, within EX28DRAFT_2081 at 2107.463 kb on - strand, within EX28DRAFT_2081 at 2107.508 kb on + strand, within EX28DRAFT_2081 at 2107.508 kb on + strand, within EX28DRAFT_2081 at 2107.509 kb on - strand, within EX28DRAFT_2081 at 2107.509 kb on - strand, within EX28DRAFT_2081
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 2,105,076 + EX28DRAFT_2079 0.58 +0.1 2,105,640 + EX28DRAFT_2079 0.87 -0.9 2,105,640 + EX28DRAFT_2079 0.87 -0.8 2,105,673 + EX28DRAFT_2079 0.89 +0.3 2,105,691 - EX28DRAFT_2079 0.90 -0.7 2,105,697 + EX28DRAFT_2079 0.90 +0.4 2,105,698 - +0.1 2,105,698 - +0.0 2,105,750 - -0.6 2,105,753 - -0.2 2,105,843 + -0.7 2,105,896 + +0.5 2,105,903 - -0.4 2,106,051 + EX28DRAFT_2080 0.19 -0.5 2,106,107 + EX28DRAFT_2080 0.26 -0.5 2,106,142 - EX28DRAFT_2080 0.31 -1.0 2,106,183 + EX28DRAFT_2080 0.36 -0.3 2,106,428 + EX28DRAFT_2080 0.68 -0.6 2,106,744 - +0.3 2,106,881 - +1.5 2,106,938 + -0.5 2,106,939 - -1.7 2,107,091 + -0.3 2,107,092 - -0.9 2,107,187 + EX28DRAFT_2081 0.16 -0.1 2,107,188 - EX28DRAFT_2081 0.16 +0.4 2,107,188 - EX28DRAFT_2081 0.16 +0.0 2,107,188 - EX28DRAFT_2081 0.16 -1.3 2,107,292 - EX28DRAFT_2081 0.23 -1.2 2,107,359 + EX28DRAFT_2081 0.27 +0.3 2,107,360 - EX28DRAFT_2081 0.27 -0.6 2,107,463 - EX28DRAFT_2081 0.34 +0.5 2,107,508 + EX28DRAFT_2081 0.36 -0.1 2,107,508 + EX28DRAFT_2081 0.36 -0.1 2,107,509 - EX28DRAFT_2081 0.36 -0.5 2,107,509 - EX28DRAFT_2081 0.36 +0.1
Or see this region's nucleotide sequence