Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2073

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2072 and EX28DRAFT_2073 overlap by 4 nucleotidesEX28DRAFT_2073 and EX28DRAFT_2074 overlap by 8 nucleotidesEX28DRAFT_2074 and EX28DRAFT_2075 overlap by 8 nucleotidesEX28DRAFT_2075 and EX28DRAFT_2076 overlap by 1 nucleotides EX28DRAFT_2072: EX28DRAFT_2072 - Type II secretory pathway, component PulK, at 2,098,264 to 2,099,283 _2072 EX28DRAFT_2073: EX28DRAFT_2073 - type II secretion system protein J, at 2,099,280 to 2,099,960 _2073 EX28DRAFT_2074: EX28DRAFT_2074 - type II secretion system protein I, at 2,099,953 to 2,100,336 _2074 EX28DRAFT_2075: EX28DRAFT_2075 - type II secretion system protein H, at 2,100,329 to 2,100,814 _2075 EX28DRAFT_2076: EX28DRAFT_2076 - type II secretion system protein G, at 2,100,814 to 2,101,263 _2076 Position (kb) 2099 2100Strain fitness (log2 ratio) -1 0 1at 2098.593 kb on + strand, within EX28DRAFT_2072at 2098.594 kb on - strand, within EX28DRAFT_2072at 2098.603 kb on + strand, within EX28DRAFT_2072at 2098.603 kb on + strand, within EX28DRAFT_2072at 2098.799 kb on + strand, within EX28DRAFT_2072at 2098.818 kb on - strand, within EX28DRAFT_2072at 2098.818 kb on - strand, within EX28DRAFT_2072at 2099.003 kb on + strand, within EX28DRAFT_2072at 2099.003 kb on + strand, within EX28DRAFT_2072at 2099.003 kb on + strand, within EX28DRAFT_2072at 2099.004 kb on - strand, within EX28DRAFT_2072at 2099.004 kb on - strand, within EX28DRAFT_2072at 2099.004 kb on - strand, within EX28DRAFT_2072at 2099.007 kb on + strand, within EX28DRAFT_2072at 2099.154 kb on - strand, within EX28DRAFT_2072at 2099.424 kb on - strand, within EX28DRAFT_2073at 2099.424 kb on - strand, within EX28DRAFT_2073at 2099.768 kb on - strand, within EX28DRAFT_2073at 2099.791 kb on + strand, within EX28DRAFT_2073at 2099.792 kb on - strand, within EX28DRAFT_2073at 2099.916 kb on - strandat 2099.916 kb on - strandat 2099.916 kb on - strandat 2100.031 kb on + strand, within EX28DRAFT_2074at 2100.076 kb on - strand, within EX28DRAFT_2074at 2100.330 kb on + strandat 2100.555 kb on - strand, within EX28DRAFT_2075at 2100.703 kb on + strand, within EX28DRAFT_2075at 2100.762 kb on - strand, within EX28DRAFT_2075at 2100.861 kb on + strand, within EX28DRAFT_2076at 2100.864 kb on + strand, within EX28DRAFT_2076

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,098,593 + EX28DRAFT_2072 0.32 +0.5
2,098,594 - EX28DRAFT_2072 0.32 +0.9
2,098,603 + EX28DRAFT_2072 0.33 +0.1
2,098,603 + EX28DRAFT_2072 0.33 +0.0
2,098,799 + EX28DRAFT_2072 0.52 -0.1
2,098,818 - EX28DRAFT_2072 0.54 -0.2
2,098,818 - EX28DRAFT_2072 0.54 +0.2
2,099,003 + EX28DRAFT_2072 0.72 -0.1
2,099,003 + EX28DRAFT_2072 0.72 -0.1
2,099,003 + EX28DRAFT_2072 0.72 -0.3
2,099,004 - EX28DRAFT_2072 0.73 -0.0
2,099,004 - EX28DRAFT_2072 0.73 +0.2
2,099,004 - EX28DRAFT_2072 0.73 +0.2
2,099,007 + EX28DRAFT_2072 0.73 -0.1
2,099,154 - EX28DRAFT_2072 0.87 -0.1
2,099,424 - EX28DRAFT_2073 0.21 -0.4
2,099,424 - EX28DRAFT_2073 0.21 -0.2
2,099,768 - EX28DRAFT_2073 0.72 +0.7
2,099,791 + EX28DRAFT_2073 0.75 -0.4
2,099,792 - EX28DRAFT_2073 0.75 +0.0
2,099,916 - -0.2
2,099,916 - +0.9
2,099,916 - +0.9
2,100,031 + EX28DRAFT_2074 0.20 -0.2
2,100,076 - EX28DRAFT_2074 0.32 +1.6
2,100,330 + +0.2
2,100,555 - EX28DRAFT_2075 0.47 -1.3
2,100,703 + EX28DRAFT_2075 0.77 -1.5
2,100,762 - EX28DRAFT_2075 0.89 -0.5
2,100,861 + EX28DRAFT_2076 0.10 -0.3
2,100,864 + EX28DRAFT_2076 0.11 -0.3

Or see this region's nucleotide sequence