Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2047 and EX28DRAFT_2048 are separated by 284 nucleotides EX28DRAFT_2048 and EX28DRAFT_2049 are separated by 71 nucleotides EX28DRAFT_2049 and EX28DRAFT_2050 are separated by 523 nucleotides
EX28DRAFT_2047: EX28DRAFT_2047 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,068,065 to 2,068,769
_2047
EX28DRAFT_2048: EX28DRAFT_2048 - bacterial translation initiation factor 1 (bIF-1), at 2,069,054 to 2,069,272
_2048
EX28DRAFT_2049: EX28DRAFT_2049 - hypothetical protein, at 2,069,344 to 2,069,790
_2049
EX28DRAFT_2050: EX28DRAFT_2050 - ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92), at 2,070,314 to 2,072,593
_2050
Position (kb)
2069
2070 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2068.497 kb on + strand, within EX28DRAFT_2047 at 2068.800 kb on + strand at 2068.801 kb on - strand at 2068.802 kb on + strand at 2068.802 kb on + strand at 2068.802 kb on + strand at 2068.803 kb on - strand at 2068.803 kb on - strand at 2068.803 kb on - strand at 2068.806 kb on + strand at 2068.881 kb on - strand at 2068.925 kb on - strand at 2069.300 kb on + strand at 2069.304 kb on + strand at 2069.304 kb on + strand at 2069.334 kb on - strand at 2069.368 kb on + strand at 2069.368 kb on + strand at 2069.368 kb on + strand at 2069.369 kb on - strand at 2069.369 kb on - strand at 2069.369 kb on - strand at 2069.369 kb on - strand at 2069.387 kb on - strand at 2069.412 kb on + strand, within EX28DRAFT_2049 at 2069.412 kb on + strand, within EX28DRAFT_2049 at 2069.458 kb on - strand, within EX28DRAFT_2049 at 2069.458 kb on - strand, within EX28DRAFT_2049 at 2069.637 kb on - strand, within EX28DRAFT_2049 at 2069.761 kb on - strand at 2069.762 kb on + strand at 2069.781 kb on + strand at 2069.781 kb on + strand at 2069.980 kb on + strand at 2069.981 kb on - strand at 2069.981 kb on - strand at 2069.989 kb on + strand at 2069.989 kb on + strand at 2069.989 kb on + strand at 2069.990 kb on - strand at 2069.990 kb on - strand at 2069.996 kb on - strand at 2070.012 kb on - strand at 2070.064 kb on + strand at 2070.254 kb on + strand at 2070.255 kb on - strand at 2070.308 kb on + strand at 2070.309 kb on - strand at 2070.360 kb on + strand at 2070.649 kb on + strand, within EX28DRAFT_2050 at 2070.649 kb on + strand, within EX28DRAFT_2050 at 2070.650 kb on - strand, within EX28DRAFT_2050 at 2070.650 kb on - strand, within EX28DRAFT_2050 at 2070.749 kb on - strand, within EX28DRAFT_2050
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 2,068,497 + EX28DRAFT_2047 0.61 -0.3 2,068,800 + +0.3 2,068,801 - +0.4 2,068,802 + -0.5 2,068,802 + -0.6 2,068,802 + +2.9 2,068,803 - +1.9 2,068,803 - +0.2 2,068,803 - +0.0 2,068,806 + +1.2 2,068,881 - -0.3 2,068,925 - -0.2 2,069,300 + +0.9 2,069,304 + -0.4 2,069,304 + +0.3 2,069,334 - -0.8 2,069,368 + +0.9 2,069,368 + +0.1 2,069,368 + +0.2 2,069,369 - +0.3 2,069,369 - -0.5 2,069,369 - -0.8 2,069,369 - +0.4 2,069,387 - +0.4 2,069,412 + EX28DRAFT_2049 0.15 -0.8 2,069,412 + EX28DRAFT_2049 0.15 -0.7 2,069,458 - EX28DRAFT_2049 0.26 -0.1 2,069,458 - EX28DRAFT_2049 0.26 -0.1 2,069,637 - EX28DRAFT_2049 0.66 -0.9 2,069,761 - +1.4 2,069,762 + +1.4 2,069,781 + -0.1 2,069,781 + +0.4 2,069,980 + +0.3 2,069,981 - +0.1 2,069,981 - +0.2 2,069,989 + -1.1 2,069,989 + -0.8 2,069,989 + -2.8 2,069,990 - -0.1 2,069,990 - -0.4 2,069,996 - -0.3 2,070,012 - -1.1 2,070,064 + +0.4 2,070,254 + -0.0 2,070,255 - -0.1 2,070,308 + -0.4 2,070,309 - +0.6 2,070,360 + +0.9 2,070,649 + EX28DRAFT_2050 0.15 +1.1 2,070,649 + EX28DRAFT_2050 0.15 +0.2 2,070,650 - EX28DRAFT_2050 0.15 -0.2 2,070,650 - EX28DRAFT_2050 0.15 +0.4 2,070,749 - EX28DRAFT_2050 0.19 +0.3
Or see this region's nucleotide sequence