Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2049

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2047 and EX28DRAFT_2048 are separated by 284 nucleotidesEX28DRAFT_2048 and EX28DRAFT_2049 are separated by 71 nucleotidesEX28DRAFT_2049 and EX28DRAFT_2050 are separated by 523 nucleotides EX28DRAFT_2047: EX28DRAFT_2047 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,068,065 to 2,068,769 _2047 EX28DRAFT_2048: EX28DRAFT_2048 - bacterial translation initiation factor 1 (bIF-1), at 2,069,054 to 2,069,272 _2048 EX28DRAFT_2049: EX28DRAFT_2049 - hypothetical protein, at 2,069,344 to 2,069,790 _2049 EX28DRAFT_2050: EX28DRAFT_2050 - ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92), at 2,070,314 to 2,072,593 _2050 Position (kb) 2069 2070Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2068.497 kb on + strand, within EX28DRAFT_2047at 2068.800 kb on + strandat 2068.801 kb on - strandat 2068.802 kb on + strandat 2068.802 kb on + strandat 2068.802 kb on + strandat 2068.803 kb on - strandat 2068.803 kb on - strandat 2068.803 kb on - strandat 2068.806 kb on + strandat 2068.881 kb on - strandat 2068.925 kb on - strandat 2069.300 kb on + strandat 2069.304 kb on + strandat 2069.304 kb on + strandat 2069.334 kb on - strandat 2069.368 kb on + strandat 2069.368 kb on + strandat 2069.368 kb on + strandat 2069.369 kb on - strandat 2069.369 kb on - strandat 2069.369 kb on - strandat 2069.369 kb on - strandat 2069.387 kb on - strandat 2069.412 kb on + strand, within EX28DRAFT_2049at 2069.412 kb on + strand, within EX28DRAFT_2049at 2069.458 kb on - strand, within EX28DRAFT_2049at 2069.458 kb on - strand, within EX28DRAFT_2049at 2069.637 kb on - strand, within EX28DRAFT_2049at 2069.761 kb on - strandat 2069.762 kb on + strandat 2069.781 kb on + strandat 2069.781 kb on + strandat 2069.980 kb on + strandat 2069.981 kb on - strandat 2069.981 kb on - strandat 2069.989 kb on + strandat 2069.989 kb on + strandat 2069.989 kb on + strandat 2069.990 kb on - strandat 2069.990 kb on - strandat 2069.996 kb on - strandat 2070.012 kb on - strandat 2070.064 kb on + strandat 2070.254 kb on + strandat 2070.255 kb on - strandat 2070.308 kb on + strandat 2070.309 kb on - strandat 2070.360 kb on + strandat 2070.649 kb on + strand, within EX28DRAFT_2050at 2070.649 kb on + strand, within EX28DRAFT_2050at 2070.650 kb on - strand, within EX28DRAFT_2050at 2070.650 kb on - strand, within EX28DRAFT_2050at 2070.749 kb on - strand, within EX28DRAFT_2050

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,068,497 + EX28DRAFT_2047 0.61 -0.3
2,068,800 + +0.3
2,068,801 - +0.4
2,068,802 + -0.5
2,068,802 + -0.6
2,068,802 + +2.9
2,068,803 - +1.9
2,068,803 - +0.2
2,068,803 - +0.0
2,068,806 + +1.2
2,068,881 - -0.3
2,068,925 - -0.2
2,069,300 + +0.9
2,069,304 + -0.4
2,069,304 + +0.3
2,069,334 - -0.8
2,069,368 + +0.9
2,069,368 + +0.1
2,069,368 + +0.2
2,069,369 - +0.3
2,069,369 - -0.5
2,069,369 - -0.8
2,069,369 - +0.4
2,069,387 - +0.4
2,069,412 + EX28DRAFT_2049 0.15 -0.8
2,069,412 + EX28DRAFT_2049 0.15 -0.7
2,069,458 - EX28DRAFT_2049 0.26 -0.1
2,069,458 - EX28DRAFT_2049 0.26 -0.1
2,069,637 - EX28DRAFT_2049 0.66 -0.9
2,069,761 - +1.4
2,069,762 + +1.4
2,069,781 + -0.1
2,069,781 + +0.4
2,069,980 + +0.3
2,069,981 - +0.1
2,069,981 - +0.2
2,069,989 + -1.1
2,069,989 + -0.8
2,069,989 + -2.8
2,069,990 - -0.1
2,069,990 - -0.4
2,069,996 - -0.3
2,070,012 - -1.1
2,070,064 + +0.4
2,070,254 + -0.0
2,070,255 - -0.1
2,070,308 + -0.4
2,070,309 - +0.6
2,070,360 + +0.9
2,070,649 + EX28DRAFT_2050 0.15 +1.1
2,070,649 + EX28DRAFT_2050 0.15 +0.2
2,070,650 - EX28DRAFT_2050 0.15 -0.2
2,070,650 - EX28DRAFT_2050 0.15 +0.4
2,070,749 - EX28DRAFT_2050 0.19 +0.3

Or see this region's nucleotide sequence