Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2036 and EX28DRAFT_2037 are separated by 1 nucleotides EX28DRAFT_2037 and EX28DRAFT_2038 are separated by 10 nucleotides
EX28DRAFT_2036: EX28DRAFT_2036 - DMSO reductase anchor subunit, at 2,050,943 to 2,051,806
_2036
EX28DRAFT_2037: EX28DRAFT_2037 - DMSO reductase, iron-sulfur subunit, at 2,051,808 to 2,052,425
_2037
EX28DRAFT_2038: EX28DRAFT_2038 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family, at 2,052,436 to 2,054,880
_2038
Position (kb)
2051
2052
2053 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2050.810 kb on + strand at 2050.811 kb on - strand at 2050.927 kb on - strand at 2050.960 kb on + strand at 2050.961 kb on - strand at 2050.961 kb on - strand at 2050.964 kb on + strand at 2050.965 kb on - strand at 2050.972 kb on + strand at 2050.983 kb on + strand at 2051.062 kb on - strand, within EX28DRAFT_2036 at 2051.368 kb on - strand, within EX28DRAFT_2036 at 2051.368 kb on - strand, within EX28DRAFT_2036 at 2051.397 kb on + strand, within EX28DRAFT_2036 at 2051.397 kb on + strand, within EX28DRAFT_2036 at 2051.398 kb on - strand, within EX28DRAFT_2036 at 2051.853 kb on - strand at 2051.853 kb on - strand at 2052.080 kb on - strand, within EX28DRAFT_2037 at 2052.307 kb on + strand, within EX28DRAFT_2037 at 2052.402 kb on - strand at 2052.523 kb on - strand at 2052.652 kb on - strand at 2052.736 kb on + strand, within EX28DRAFT_2038 at 2052.737 kb on - strand, within EX28DRAFT_2038 at 2052.827 kb on + strand, within EX28DRAFT_2038 at 2052.828 kb on - strand, within EX28DRAFT_2038 at 2052.828 kb on - strand, within EX28DRAFT_2038 at 2052.828 kb on - strand, within EX28DRAFT_2038 at 2052.828 kb on - strand, within EX28DRAFT_2038 at 2052.848 kb on + strand, within EX28DRAFT_2038 at 2052.848 kb on + strand, within EX28DRAFT_2038 at 2052.849 kb on - strand, within EX28DRAFT_2038 at 2052.924 kb on - strand, within EX28DRAFT_2038 at 2053.025 kb on + strand, within EX28DRAFT_2038 at 2053.025 kb on + strand, within EX28DRAFT_2038 at 2053.026 kb on - strand, within EX28DRAFT_2038 at 2053.026 kb on - strand, within EX28DRAFT_2038 at 2053.026 kb on - strand, within EX28DRAFT_2038 at 2053.029 kb on + strand, within EX28DRAFT_2038 at 2053.119 kb on + strand, within EX28DRAFT_2038 at 2053.182 kb on - strand, within EX28DRAFT_2038 at 2053.236 kb on - strand, within EX28DRAFT_2038 at 2053.317 kb on - strand, within EX28DRAFT_2038
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 2,050,810 + -1.1 2,050,811 - -0.0 2,050,927 - -0.9 2,050,960 + -1.2 2,050,961 - +0.3 2,050,961 - +0.1 2,050,964 + -0.3 2,050,965 - +0.4 2,050,972 + +0.1 2,050,983 + -0.2 2,051,062 - EX28DRAFT_2036 0.14 +1.3 2,051,368 - EX28DRAFT_2036 0.49 +0.5 2,051,368 - EX28DRAFT_2036 0.49 -0.6 2,051,397 + EX28DRAFT_2036 0.53 -0.2 2,051,397 + EX28DRAFT_2036 0.53 +0.6 2,051,398 - EX28DRAFT_2036 0.53 +0.9 2,051,853 - +0.0 2,051,853 - -0.0 2,052,080 - EX28DRAFT_2037 0.44 -2.0 2,052,307 + EX28DRAFT_2037 0.81 -0.1 2,052,402 - +0.3 2,052,523 - +0.7 2,052,652 - +0.1 2,052,736 + EX28DRAFT_2038 0.12 -0.5 2,052,737 - EX28DRAFT_2038 0.12 +0.9 2,052,827 + EX28DRAFT_2038 0.16 -0.2 2,052,828 - EX28DRAFT_2038 0.16 +0.9 2,052,828 - EX28DRAFT_2038 0.16 -0.3 2,052,828 - EX28DRAFT_2038 0.16 -0.2 2,052,828 - EX28DRAFT_2038 0.16 -0.5 2,052,848 + EX28DRAFT_2038 0.17 -2.1 2,052,848 + EX28DRAFT_2038 0.17 +0.1 2,052,849 - EX28DRAFT_2038 0.17 -0.2 2,052,924 - EX28DRAFT_2038 0.20 -0.1 2,053,025 + EX28DRAFT_2038 0.24 +0.2 2,053,025 + EX28DRAFT_2038 0.24 -0.2 2,053,026 - EX28DRAFT_2038 0.24 -0.2 2,053,026 - EX28DRAFT_2038 0.24 -1.4 2,053,026 - EX28DRAFT_2038 0.24 -1.1 2,053,029 + EX28DRAFT_2038 0.24 +1.3 2,053,119 + EX28DRAFT_2038 0.28 +1.9 2,053,182 - EX28DRAFT_2038 0.31 +0.5 2,053,236 - EX28DRAFT_2038 0.33 +1.3 2,053,317 - EX28DRAFT_2038 0.36 -1.5
Or see this region's nucleotide sequence