Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2037

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2036 and EX28DRAFT_2037 are separated by 1 nucleotidesEX28DRAFT_2037 and EX28DRAFT_2038 are separated by 10 nucleotides EX28DRAFT_2036: EX28DRAFT_2036 - DMSO reductase anchor subunit, at 2,050,943 to 2,051,806 _2036 EX28DRAFT_2037: EX28DRAFT_2037 - DMSO reductase, iron-sulfur subunit, at 2,051,808 to 2,052,425 _2037 EX28DRAFT_2038: EX28DRAFT_2038 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family, at 2,052,436 to 2,054,880 _2038 Position (kb) 2051 2052 2053Strain fitness (log2 ratio) -2 -1 0 1 2at 2050.810 kb on + strandat 2050.811 kb on - strandat 2050.927 kb on - strandat 2050.960 kb on + strandat 2050.961 kb on - strandat 2050.961 kb on - strandat 2050.964 kb on + strandat 2050.965 kb on - strandat 2050.972 kb on + strandat 2050.983 kb on + strandat 2051.062 kb on - strand, within EX28DRAFT_2036at 2051.368 kb on - strand, within EX28DRAFT_2036at 2051.368 kb on - strand, within EX28DRAFT_2036at 2051.397 kb on + strand, within EX28DRAFT_2036at 2051.397 kb on + strand, within EX28DRAFT_2036at 2051.398 kb on - strand, within EX28DRAFT_2036at 2051.853 kb on - strandat 2051.853 kb on - strandat 2052.080 kb on - strand, within EX28DRAFT_2037at 2052.307 kb on + strand, within EX28DRAFT_2037at 2052.402 kb on - strandat 2052.523 kb on - strandat 2052.652 kb on - strandat 2052.736 kb on + strand, within EX28DRAFT_2038at 2052.737 kb on - strand, within EX28DRAFT_2038at 2052.827 kb on + strand, within EX28DRAFT_2038at 2052.828 kb on - strand, within EX28DRAFT_2038at 2052.828 kb on - strand, within EX28DRAFT_2038at 2052.828 kb on - strand, within EX28DRAFT_2038at 2052.828 kb on - strand, within EX28DRAFT_2038at 2052.848 kb on + strand, within EX28DRAFT_2038at 2052.848 kb on + strand, within EX28DRAFT_2038at 2052.849 kb on - strand, within EX28DRAFT_2038at 2052.924 kb on - strand, within EX28DRAFT_2038at 2053.025 kb on + strand, within EX28DRAFT_2038at 2053.025 kb on + strand, within EX28DRAFT_2038at 2053.026 kb on - strand, within EX28DRAFT_2038at 2053.026 kb on - strand, within EX28DRAFT_2038at 2053.026 kb on - strand, within EX28DRAFT_2038at 2053.029 kb on + strand, within EX28DRAFT_2038at 2053.119 kb on + strand, within EX28DRAFT_2038at 2053.182 kb on - strand, within EX28DRAFT_2038at 2053.236 kb on - strand, within EX28DRAFT_2038at 2053.317 kb on - strand, within EX28DRAFT_2038

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,050,810 + -1.1
2,050,811 - -0.0
2,050,927 - -0.9
2,050,960 + -1.2
2,050,961 - +0.3
2,050,961 - +0.1
2,050,964 + -0.3
2,050,965 - +0.4
2,050,972 + +0.1
2,050,983 + -0.2
2,051,062 - EX28DRAFT_2036 0.14 +1.3
2,051,368 - EX28DRAFT_2036 0.49 +0.5
2,051,368 - EX28DRAFT_2036 0.49 -0.6
2,051,397 + EX28DRAFT_2036 0.53 -0.2
2,051,397 + EX28DRAFT_2036 0.53 +0.6
2,051,398 - EX28DRAFT_2036 0.53 +0.9
2,051,853 - +0.0
2,051,853 - -0.0
2,052,080 - EX28DRAFT_2037 0.44 -2.0
2,052,307 + EX28DRAFT_2037 0.81 -0.1
2,052,402 - +0.3
2,052,523 - +0.7
2,052,652 - +0.1
2,052,736 + EX28DRAFT_2038 0.12 -0.5
2,052,737 - EX28DRAFT_2038 0.12 +0.9
2,052,827 + EX28DRAFT_2038 0.16 -0.2
2,052,828 - EX28DRAFT_2038 0.16 +0.9
2,052,828 - EX28DRAFT_2038 0.16 -0.3
2,052,828 - EX28DRAFT_2038 0.16 -0.2
2,052,828 - EX28DRAFT_2038 0.16 -0.5
2,052,848 + EX28DRAFT_2038 0.17 -2.1
2,052,848 + EX28DRAFT_2038 0.17 +0.1
2,052,849 - EX28DRAFT_2038 0.17 -0.2
2,052,924 - EX28DRAFT_2038 0.20 -0.1
2,053,025 + EX28DRAFT_2038 0.24 +0.2
2,053,025 + EX28DRAFT_2038 0.24 -0.2
2,053,026 - EX28DRAFT_2038 0.24 -0.2
2,053,026 - EX28DRAFT_2038 0.24 -1.4
2,053,026 - EX28DRAFT_2038 0.24 -1.1
2,053,029 + EX28DRAFT_2038 0.24 +1.3
2,053,119 + EX28DRAFT_2038 0.28 +1.9
2,053,182 - EX28DRAFT_2038 0.31 +0.5
2,053,236 - EX28DRAFT_2038 0.33 +1.3
2,053,317 - EX28DRAFT_2038 0.36 -1.5

Or see this region's nucleotide sequence