Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1655 and EX28DRAFT_1656 are separated by 17 nucleotides EX28DRAFT_1656 and EX28DRAFT_1657 are separated by 114 nucleotides
EX28DRAFT_1655: EX28DRAFT_1655 - Transcriptional regulators, at 1,671,124 to 1,672,149
_1655
EX28DRAFT_1656: EX28DRAFT_1656 - Transcriptional regulator, at 1,672,167 to 1,673,078
_1656
EX28DRAFT_1657: EX28DRAFT_1657 - drug resistance transporter, Bcr/CflA subfamily, at 1,673,193 to 1,674,392
_1657
Position (kb)
1672
1673
1674 Strain fitness (log2 ratio)
-2
-1
0
1 at 1671.186 kb on - strand at 1671.190 kb on - strand at 1671.391 kb on + strand, within EX28DRAFT_1655 at 1671.420 kb on + strand, within EX28DRAFT_1655 at 1671.420 kb on + strand, within EX28DRAFT_1655 at 1671.421 kb on - strand, within EX28DRAFT_1655 at 1671.442 kb on + strand, within EX28DRAFT_1655 at 1671.624 kb on + strand, within EX28DRAFT_1655 at 1671.625 kb on - strand, within EX28DRAFT_1655 at 1671.625 kb on - strand, within EX28DRAFT_1655 at 1672.168 kb on + strand at 1672.168 kb on + strand at 1672.169 kb on - strand at 1672.169 kb on - strand at 1672.479 kb on - strand, within EX28DRAFT_1656 at 1672.634 kb on + strand, within EX28DRAFT_1656 at 1673.052 kb on + strand at 1673.147 kb on + strand at 1673.148 kb on - strand at 1673.164 kb on + strand at 1673.165 kb on - strand at 1673.166 kb on + strand at 1673.167 kb on - strand at 1673.167 kb on - strand at 1673.167 kb on - strand at 1673.191 kb on + strand at 1673.192 kb on - strand at 1673.215 kb on + strand at 1673.262 kb on - strand at 1673.262 kb on - strand at 1673.265 kb on + strand at 1673.265 kb on + strand at 1673.265 kb on + strand at 1673.266 kb on - strand at 1673.266 kb on - strand at 1673.266 kb on - strand at 1673.300 kb on - strand at 1673.300 kb on - strand at 1673.597 kb on + strand, within EX28DRAFT_1657 at 1673.707 kb on + strand, within EX28DRAFT_1657 at 1673.829 kb on + strand, within EX28DRAFT_1657 at 1673.830 kb on - strand, within EX28DRAFT_1657 at 1673.926 kb on - strand, within EX28DRAFT_1657 at 1674.028 kb on - strand, within EX28DRAFT_1657
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 1,671,186 - -1.6 1,671,190 - -0.3 1,671,391 + EX28DRAFT_1655 0.26 -0.4 1,671,420 + EX28DRAFT_1655 0.29 -0.5 1,671,420 + EX28DRAFT_1655 0.29 +1.1 1,671,421 - EX28DRAFT_1655 0.29 +0.9 1,671,442 + EX28DRAFT_1655 0.31 +0.6 1,671,624 + EX28DRAFT_1655 0.49 +0.1 1,671,625 - EX28DRAFT_1655 0.49 -0.5 1,671,625 - EX28DRAFT_1655 0.49 -0.8 1,672,168 + +0.7 1,672,168 + -0.3 1,672,169 - -0.1 1,672,169 - -0.4 1,672,479 - EX28DRAFT_1656 0.34 -0.9 1,672,634 + EX28DRAFT_1656 0.51 -0.5 1,673,052 + -1.5 1,673,147 + -0.4 1,673,148 - +0.0 1,673,164 + -0.7 1,673,165 - -2.3 1,673,166 + -0.4 1,673,167 - +0.2 1,673,167 - +0.6 1,673,167 - -1.2 1,673,191 + +0.1 1,673,192 - -0.4 1,673,215 + +0.0 1,673,262 - +0.6 1,673,262 - -2.0 1,673,265 + -1.1 1,673,265 + +1.6 1,673,265 + -0.3 1,673,266 - -0.4 1,673,266 - -1.2 1,673,266 - -0.4 1,673,300 - +0.8 1,673,300 - +1.0 1,673,597 + EX28DRAFT_1657 0.34 -0.5 1,673,707 + EX28DRAFT_1657 0.43 -0.1 1,673,829 + EX28DRAFT_1657 0.53 +0.0 1,673,830 - EX28DRAFT_1657 0.53 -0.1 1,673,926 - EX28DRAFT_1657 0.61 -0.3 1,674,028 - EX28DRAFT_1657 0.70 +0.4
Or see this region's nucleotide sequence