Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1656

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1655 and EX28DRAFT_1656 are separated by 17 nucleotidesEX28DRAFT_1656 and EX28DRAFT_1657 are separated by 114 nucleotides EX28DRAFT_1655: EX28DRAFT_1655 - Transcriptional regulators, at 1,671,124 to 1,672,149 _1655 EX28DRAFT_1656: EX28DRAFT_1656 - Transcriptional regulator, at 1,672,167 to 1,673,078 _1656 EX28DRAFT_1657: EX28DRAFT_1657 - drug resistance transporter, Bcr/CflA subfamily, at 1,673,193 to 1,674,392 _1657 Position (kb) 1672 1673 1674Strain fitness (log2 ratio) -2 -1 0 1at 1671.186 kb on - strandat 1671.190 kb on - strandat 1671.391 kb on + strand, within EX28DRAFT_1655at 1671.420 kb on + strand, within EX28DRAFT_1655at 1671.420 kb on + strand, within EX28DRAFT_1655at 1671.421 kb on - strand, within EX28DRAFT_1655at 1671.442 kb on + strand, within EX28DRAFT_1655at 1671.624 kb on + strand, within EX28DRAFT_1655at 1671.625 kb on - strand, within EX28DRAFT_1655at 1671.625 kb on - strand, within EX28DRAFT_1655at 1672.168 kb on + strandat 1672.168 kb on + strandat 1672.169 kb on - strandat 1672.169 kb on - strandat 1672.479 kb on - strand, within EX28DRAFT_1656at 1672.634 kb on + strand, within EX28DRAFT_1656at 1673.052 kb on + strandat 1673.147 kb on + strandat 1673.148 kb on - strandat 1673.164 kb on + strandat 1673.165 kb on - strandat 1673.166 kb on + strandat 1673.167 kb on - strandat 1673.167 kb on - strandat 1673.167 kb on - strandat 1673.191 kb on + strandat 1673.192 kb on - strandat 1673.215 kb on + strandat 1673.262 kb on - strandat 1673.262 kb on - strandat 1673.265 kb on + strandat 1673.265 kb on + strandat 1673.265 kb on + strandat 1673.266 kb on - strandat 1673.266 kb on - strandat 1673.266 kb on - strandat 1673.300 kb on - strandat 1673.300 kb on - strandat 1673.597 kb on + strand, within EX28DRAFT_1657at 1673.707 kb on + strand, within EX28DRAFT_1657at 1673.829 kb on + strand, within EX28DRAFT_1657at 1673.830 kb on - strand, within EX28DRAFT_1657at 1673.926 kb on - strand, within EX28DRAFT_1657at 1674.028 kb on - strand, within EX28DRAFT_1657

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,671,186 - -1.6
1,671,190 - -0.3
1,671,391 + EX28DRAFT_1655 0.26 -0.4
1,671,420 + EX28DRAFT_1655 0.29 -0.5
1,671,420 + EX28DRAFT_1655 0.29 +1.1
1,671,421 - EX28DRAFT_1655 0.29 +0.9
1,671,442 + EX28DRAFT_1655 0.31 +0.6
1,671,624 + EX28DRAFT_1655 0.49 +0.1
1,671,625 - EX28DRAFT_1655 0.49 -0.5
1,671,625 - EX28DRAFT_1655 0.49 -0.8
1,672,168 + +0.7
1,672,168 + -0.3
1,672,169 - -0.1
1,672,169 - -0.4
1,672,479 - EX28DRAFT_1656 0.34 -0.9
1,672,634 + EX28DRAFT_1656 0.51 -0.5
1,673,052 + -1.5
1,673,147 + -0.4
1,673,148 - +0.0
1,673,164 + -0.7
1,673,165 - -2.3
1,673,166 + -0.4
1,673,167 - +0.2
1,673,167 - +0.6
1,673,167 - -1.2
1,673,191 + +0.1
1,673,192 - -0.4
1,673,215 + +0.0
1,673,262 - +0.6
1,673,262 - -2.0
1,673,265 + -1.1
1,673,265 + +1.6
1,673,265 + -0.3
1,673,266 - -0.4
1,673,266 - -1.2
1,673,266 - -0.4
1,673,300 - +0.8
1,673,300 - +1.0
1,673,597 + EX28DRAFT_1657 0.34 -0.5
1,673,707 + EX28DRAFT_1657 0.43 -0.1
1,673,829 + EX28DRAFT_1657 0.53 +0.0
1,673,830 - EX28DRAFT_1657 0.53 -0.1
1,673,926 - EX28DRAFT_1657 0.61 -0.3
1,674,028 - EX28DRAFT_1657 0.70 +0.4

Or see this region's nucleotide sequence