Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1360

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1358 and EX28DRAFT_1359 are separated by 90 nucleotidesEX28DRAFT_1359 and EX28DRAFT_1360 are separated by 7 nucleotidesEX28DRAFT_1360 and EX28DRAFT_1361 are separated by 311 nucleotides EX28DRAFT_1358: EX28DRAFT_1358 - Acyl carrier protein phosphodiesterase, at 1,376,913 to 1,377,518 _1358 EX28DRAFT_1359: EX28DRAFT_1359 - Pseudouridylate synthases, 23S RNA-specific, at 1,377,609 to 1,378,295 _1359 EX28DRAFT_1360: EX28DRAFT_1360 - Uncharacterized protein conserved in bacteria, at 1,378,303 to 1,378,842 _1360 EX28DRAFT_1361: EX28DRAFT_1361 - hypothetical protein, at 1,379,154 to 1,380,269 _1361 Position (kb) 1378 1379Strain fitness (log2 ratio) -2 -1 0 1at 1377.322 kb on + strand, within EX28DRAFT_1358at 1377.621 kb on - strandat 1377.904 kb on - strand, within EX28DRAFT_1359at 1377.949 kb on + strand, within EX28DRAFT_1359at 1377.950 kb on - strand, within EX28DRAFT_1359at 1377.950 kb on - strand, within EX28DRAFT_1359at 1377.950 kb on - strand, within EX28DRAFT_1359at 1378.053 kb on + strand, within EX28DRAFT_1359at 1378.170 kb on + strand, within EX28DRAFT_1359at 1378.242 kb on - strandat 1378.440 kb on + strand, within EX28DRAFT_1360at 1378.569 kb on + strand, within EX28DRAFT_1360at 1378.708 kb on - strand, within EX28DRAFT_1360at 1378.877 kb on + strandat 1378.911 kb on + strandat 1379.035 kb on + strandat 1379.036 kb on - strandat 1379.036 kb on - strandat 1379.051 kb on + strandat 1379.326 kb on + strand, within EX28DRAFT_1361at 1379.326 kb on + strand, within EX28DRAFT_1361at 1379.326 kb on + strand, within EX28DRAFT_1361at 1379.327 kb on - strand, within EX28DRAFT_1361at 1379.347 kb on - strand, within EX28DRAFT_1361at 1379.382 kb on + strand, within EX28DRAFT_1361at 1379.382 kb on + strand, within EX28DRAFT_1361at 1379.529 kb on + strand, within EX28DRAFT_1361at 1379.530 kb on - strand, within EX28DRAFT_1361at 1379.530 kb on - strand, within EX28DRAFT_1361at 1379.532 kb on - strand, within EX28DRAFT_1361at 1379.532 kb on - strand, within EX28DRAFT_1361at 1379.532 kb on - strand, within EX28DRAFT_1361at 1379.532 kb on - strand, within EX28DRAFT_1361at 1379.700 kb on + strand, within EX28DRAFT_1361at 1379.700 kb on + strand, within EX28DRAFT_1361at 1379.700 kb on + strand, within EX28DRAFT_1361at 1379.700 kb on + strand, within EX28DRAFT_1361at 1379.794 kb on + strand, within EX28DRAFT_1361at 1379.802 kb on - strand, within EX28DRAFT_1361

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,377,322 + EX28DRAFT_1358 0.67 -1.9
1,377,621 - -0.3
1,377,904 - EX28DRAFT_1359 0.43 -0.6
1,377,949 + EX28DRAFT_1359 0.49 +0.8
1,377,950 - EX28DRAFT_1359 0.50 -0.2
1,377,950 - EX28DRAFT_1359 0.50 -1.2
1,377,950 - EX28DRAFT_1359 0.50 -0.3
1,378,053 + EX28DRAFT_1359 0.65 +0.8
1,378,170 + EX28DRAFT_1359 0.82 -0.4
1,378,242 - +0.9
1,378,440 + EX28DRAFT_1360 0.25 -0.3
1,378,569 + EX28DRAFT_1360 0.49 -0.4
1,378,708 - EX28DRAFT_1360 0.75 -1.0
1,378,877 + -0.3
1,378,911 + +0.2
1,379,035 + -0.8
1,379,036 - +0.7
1,379,036 - +0.3
1,379,051 + -0.2
1,379,326 + EX28DRAFT_1361 0.15 +0.1
1,379,326 + EX28DRAFT_1361 0.15 -0.9
1,379,326 + EX28DRAFT_1361 0.15 -0.1
1,379,327 - EX28DRAFT_1361 0.16 +0.4
1,379,347 - EX28DRAFT_1361 0.17 -0.5
1,379,382 + EX28DRAFT_1361 0.20 +0.6
1,379,382 + EX28DRAFT_1361 0.20 -1.1
1,379,529 + EX28DRAFT_1361 0.34 -0.2
1,379,530 - EX28DRAFT_1361 0.34 -0.7
1,379,530 - EX28DRAFT_1361 0.34 -1.5
1,379,532 - EX28DRAFT_1361 0.34 +1.2
1,379,532 - EX28DRAFT_1361 0.34 -0.4
1,379,532 - EX28DRAFT_1361 0.34 +1.4
1,379,532 - EX28DRAFT_1361 0.34 -1.9
1,379,700 + EX28DRAFT_1361 0.49 -0.5
1,379,700 + EX28DRAFT_1361 0.49 -0.4
1,379,700 + EX28DRAFT_1361 0.49 +0.5
1,379,700 + EX28DRAFT_1361 0.49 -1.1
1,379,794 + EX28DRAFT_1361 0.57 +0.3
1,379,802 - EX28DRAFT_1361 0.58 -0.9

Or see this region's nucleotide sequence