Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1121

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1120 and EX28DRAFT_1121 are separated by 88 nucleotidesEX28DRAFT_1121 and EX28DRAFT_1122 are separated by 173 nucleotides EX28DRAFT_1120: EX28DRAFT_1120 - FOG: EAL domain, at 1,133,179 to 1,134,423 _1120 EX28DRAFT_1121: EX28DRAFT_1121 - Sugar kinases, ribokinase family, at 1,134,512 to 1,135,402 _1121 EX28DRAFT_1122: EX28DRAFT_1122 - Maltoporin (phage lambda and maltose receptor), at 1,135,576 to 1,137,093 _1122 Position (kb) 1134 1135 1136Strain fitness (log2 ratio) -1 0 1at 1133.564 kb on - strand, within EX28DRAFT_1120at 1133.564 kb on - strand, within EX28DRAFT_1120at 1133.645 kb on - strand, within EX28DRAFT_1120at 1133.649 kb on - strand, within EX28DRAFT_1120at 1133.842 kb on + strand, within EX28DRAFT_1120at 1133.842 kb on + strand, within EX28DRAFT_1120at 1133.878 kb on + strand, within EX28DRAFT_1120at 1133.919 kb on + strand, within EX28DRAFT_1120at 1133.919 kb on + strand, within EX28DRAFT_1120at 1133.920 kb on - strand, within EX28DRAFT_1120at 1134.177 kb on + strand, within EX28DRAFT_1120at 1134.200 kb on + strand, within EX28DRAFT_1120at 1134.201 kb on - strand, within EX28DRAFT_1120at 1134.308 kb on + strandat 1134.309 kb on - strandat 1134.397 kb on - strandat 1134.727 kb on + strand, within EX28DRAFT_1121at 1134.727 kb on + strand, within EX28DRAFT_1121at 1134.806 kb on - strand, within EX28DRAFT_1121at 1135.401 kb on - strandat 1135.511 kb on - strandat 1135.561 kb on + strandat 1135.627 kb on - strandat 1136.084 kb on - strand, within EX28DRAFT_1122at 1136.084 kb on - strand, within EX28DRAFT_1122at 1136.374 kb on + strand, within EX28DRAFT_1122at 1136.374 kb on + strand, within EX28DRAFT_1122at 1136.375 kb on - strand, within EX28DRAFT_1122at 1136.375 kb on - strand, within EX28DRAFT_1122at 1136.377 kb on - strand, within EX28DRAFT_1122

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,133,564 - EX28DRAFT_1120 0.31 -0.6
1,133,564 - EX28DRAFT_1120 0.31 +0.2
1,133,645 - EX28DRAFT_1120 0.37 -0.2
1,133,649 - EX28DRAFT_1120 0.38 +0.1
1,133,842 + EX28DRAFT_1120 0.53 -1.1
1,133,842 + EX28DRAFT_1120 0.53 +0.3
1,133,878 + EX28DRAFT_1120 0.56 -0.3
1,133,919 + EX28DRAFT_1120 0.59 -0.5
1,133,919 + EX28DRAFT_1120 0.59 -0.2
1,133,920 - EX28DRAFT_1120 0.60 -0.2
1,134,177 + EX28DRAFT_1120 0.80 +0.5
1,134,200 + EX28DRAFT_1120 0.82 -0.0
1,134,201 - EX28DRAFT_1120 0.82 -0.6
1,134,308 + -1.5
1,134,309 - +0.5
1,134,397 - +0.3
1,134,727 + EX28DRAFT_1121 0.24 +0.5
1,134,727 + EX28DRAFT_1121 0.24 -1.3
1,134,806 - EX28DRAFT_1121 0.33 -0.5
1,135,401 - -0.2
1,135,511 - +0.5
1,135,561 + +0.2
1,135,627 - -1.1
1,136,084 - EX28DRAFT_1122 0.33 +0.3
1,136,084 - EX28DRAFT_1122 0.33 +0.8
1,136,374 + EX28DRAFT_1122 0.53 -0.5
1,136,374 + EX28DRAFT_1122 0.53 -0.4
1,136,375 - EX28DRAFT_1122 0.53 +0.2
1,136,375 - EX28DRAFT_1122 0.53 +0.1
1,136,377 - EX28DRAFT_1122 0.53 -0.7

Or see this region's nucleotide sequence