Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1120 and EX28DRAFT_1121 are separated by 88 nucleotides EX28DRAFT_1121 and EX28DRAFT_1122 are separated by 173 nucleotides
EX28DRAFT_1120: EX28DRAFT_1120 - FOG: EAL domain, at 1,133,179 to 1,134,423
_1120
EX28DRAFT_1121: EX28DRAFT_1121 - Sugar kinases, ribokinase family, at 1,134,512 to 1,135,402
_1121
EX28DRAFT_1122: EX28DRAFT_1122 - Maltoporin (phage lambda and maltose receptor), at 1,135,576 to 1,137,093
_1122
Position (kb)
1134
1135
1136 Strain fitness (log2 ratio)
-1
0
1 at 1133.564 kb on - strand, within EX28DRAFT_1120 at 1133.564 kb on - strand, within EX28DRAFT_1120 at 1133.645 kb on - strand, within EX28DRAFT_1120 at 1133.649 kb on - strand, within EX28DRAFT_1120 at 1133.842 kb on + strand, within EX28DRAFT_1120 at 1133.842 kb on + strand, within EX28DRAFT_1120 at 1133.878 kb on + strand, within EX28DRAFT_1120 at 1133.919 kb on + strand, within EX28DRAFT_1120 at 1133.919 kb on + strand, within EX28DRAFT_1120 at 1133.920 kb on - strand, within EX28DRAFT_1120 at 1134.177 kb on + strand, within EX28DRAFT_1120 at 1134.200 kb on + strand, within EX28DRAFT_1120 at 1134.201 kb on - strand, within EX28DRAFT_1120 at 1134.308 kb on + strand at 1134.309 kb on - strand at 1134.397 kb on - strand at 1134.727 kb on + strand, within EX28DRAFT_1121 at 1134.727 kb on + strand, within EX28DRAFT_1121 at 1134.806 kb on - strand, within EX28DRAFT_1121 at 1135.401 kb on - strand at 1135.511 kb on - strand at 1135.561 kb on + strand at 1135.627 kb on - strand at 1136.084 kb on - strand, within EX28DRAFT_1122 at 1136.084 kb on - strand, within EX28DRAFT_1122 at 1136.374 kb on + strand, within EX28DRAFT_1122 at 1136.374 kb on + strand, within EX28DRAFT_1122 at 1136.375 kb on - strand, within EX28DRAFT_1122 at 1136.375 kb on - strand, within EX28DRAFT_1122 at 1136.377 kb on - strand, within EX28DRAFT_1122
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 1,133,564 - EX28DRAFT_1120 0.31 -0.6 1,133,564 - EX28DRAFT_1120 0.31 +0.2 1,133,645 - EX28DRAFT_1120 0.37 -0.2 1,133,649 - EX28DRAFT_1120 0.38 +0.1 1,133,842 + EX28DRAFT_1120 0.53 -1.1 1,133,842 + EX28DRAFT_1120 0.53 +0.3 1,133,878 + EX28DRAFT_1120 0.56 -0.3 1,133,919 + EX28DRAFT_1120 0.59 -0.5 1,133,919 + EX28DRAFT_1120 0.59 -0.2 1,133,920 - EX28DRAFT_1120 0.60 -0.2 1,134,177 + EX28DRAFT_1120 0.80 +0.5 1,134,200 + EX28DRAFT_1120 0.82 -0.0 1,134,201 - EX28DRAFT_1120 0.82 -0.6 1,134,308 + -1.5 1,134,309 - +0.5 1,134,397 - +0.3 1,134,727 + EX28DRAFT_1121 0.24 +0.5 1,134,727 + EX28DRAFT_1121 0.24 -1.3 1,134,806 - EX28DRAFT_1121 0.33 -0.5 1,135,401 - -0.2 1,135,511 - +0.5 1,135,561 + +0.2 1,135,627 - -1.1 1,136,084 - EX28DRAFT_1122 0.33 +0.3 1,136,084 - EX28DRAFT_1122 0.33 +0.8 1,136,374 + EX28DRAFT_1122 0.53 -0.5 1,136,374 + EX28DRAFT_1122 0.53 -0.4 1,136,375 - EX28DRAFT_1122 0.53 +0.2 1,136,375 - EX28DRAFT_1122 0.53 +0.1 1,136,377 - EX28DRAFT_1122 0.53 -0.7
Or see this region's nucleotide sequence