Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0934

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0933 and EX28DRAFT_0934 are separated by 10 nucleotidesEX28DRAFT_0934 and EX28DRAFT_0935 are separated by 3 nucleotides EX28DRAFT_0933: EX28DRAFT_0933 - tryptophan synthase, beta subunit, at 931,491 to 932,684 _0933 EX28DRAFT_0934: EX28DRAFT_0934 - indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 932,695 to 934,053 _0934 EX28DRAFT_0935: EX28DRAFT_0935 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 934,057 to 935,652 _0935 Position (kb) 932 933 934 935Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 931.714 kb on + strand, within EX28DRAFT_0933at 931.715 kb on - strand, within EX28DRAFT_0933at 931.792 kb on + strand, within EX28DRAFT_0933at 931.792 kb on + strand, within EX28DRAFT_0933at 931.793 kb on - strand, within EX28DRAFT_0933at 931.849 kb on + strand, within EX28DRAFT_0933at 932.127 kb on - strand, within EX28DRAFT_0933at 932.127 kb on - strand, within EX28DRAFT_0933at 932.127 kb on - strand, within EX28DRAFT_0933at 932.128 kb on + strand, within EX28DRAFT_0933at 932.128 kb on + strand, within EX28DRAFT_0933at 932.128 kb on + strand, within EX28DRAFT_0933at 932.129 kb on - strand, within EX28DRAFT_0933at 932.129 kb on - strand, within EX28DRAFT_0933at 932.129 kb on - strand, within EX28DRAFT_0933at 932.129 kb on - strand, within EX28DRAFT_0933at 932.129 kb on - strand, within EX28DRAFT_0933at 932.129 kb on - strand, within EX28DRAFT_0933at 932.143 kb on + strand, within EX28DRAFT_0933at 932.143 kb on + strand, within EX28DRAFT_0933at 932.144 kb on - strand, within EX28DRAFT_0933at 932.287 kb on + strand, within EX28DRAFT_0933at 932.287 kb on + strand, within EX28DRAFT_0933at 932.287 kb on + strand, within EX28DRAFT_0933at 932.288 kb on - strand, within EX28DRAFT_0933at 932.427 kb on - strand, within EX28DRAFT_0933at 932.464 kb on + strand, within EX28DRAFT_0933at 932.638 kb on + strandat 932.639 kb on - strandat 932.639 kb on - strandat 932.639 kb on - strandat 932.673 kb on + strandat 932.673 kb on + strandat 932.674 kb on - strandat 932.697 kb on - strandat 932.700 kb on - strandat 932.749 kb on - strandat 932.764 kb on + strandat 932.812 kb on + strandat 932.813 kb on - strandat 932.830 kb on + strandat 932.927 kb on + strand, within EX28DRAFT_0934at 932.927 kb on + strand, within EX28DRAFT_0934at 932.928 kb on - strand, within EX28DRAFT_0934at 932.931 kb on + strand, within EX28DRAFT_0934at 932.931 kb on + strand, within EX28DRAFT_0934at 932.932 kb on - strand, within EX28DRAFT_0934at 932.964 kb on + strand, within EX28DRAFT_0934at 932.965 kb on - strand, within EX28DRAFT_0934at 933.032 kb on + strand, within EX28DRAFT_0934at 933.033 kb on - strand, within EX28DRAFT_0934at 933.108 kb on + strand, within EX28DRAFT_0934at 933.108 kb on + strand, within EX28DRAFT_0934at 933.108 kb on + strand, within EX28DRAFT_0934at 933.134 kb on + strand, within EX28DRAFT_0934at 933.134 kb on + strand, within EX28DRAFT_0934at 933.134 kb on + strand, within EX28DRAFT_0934at 933.135 kb on - strand, within EX28DRAFT_0934at 933.135 kb on - strand, within EX28DRAFT_0934at 933.163 kb on - strand, within EX28DRAFT_0934at 933.163 kb on - strand, within EX28DRAFT_0934at 933.377 kb on - strand, within EX28DRAFT_0934at 933.377 kb on - strand, within EX28DRAFT_0934at 933.669 kb on - strand, within EX28DRAFT_0934at 933.669 kb on - strand, within EX28DRAFT_0934at 933.702 kb on + strand, within EX28DRAFT_0934at 933.706 kb on - strand, within EX28DRAFT_0934at 933.824 kb on + strand, within EX28DRAFT_0934at 933.935 kb on + strandat 934.111 kb on + strandat 934.112 kb on - strandat 934.112 kb on - strandat 934.112 kb on - strandat 934.228 kb on + strand, within EX28DRAFT_0935at 934.290 kb on - strand, within EX28DRAFT_0935at 934.290 kb on - strand, within EX28DRAFT_0935at 934.326 kb on - strand, within EX28DRAFT_0935at 934.326 kb on - strand, within EX28DRAFT_0935at 934.596 kb on - strand, within EX28DRAFT_0935at 934.662 kb on + strand, within EX28DRAFT_0935at 934.674 kb on + strand, within EX28DRAFT_0935at 934.789 kb on - strand, within EX28DRAFT_0935at 934.801 kb on - strand, within EX28DRAFT_0935at 934.828 kb on - strand, within EX28DRAFT_0935

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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931,714 + EX28DRAFT_0933 0.19 -4.3
931,715 - EX28DRAFT_0933 0.19 -1.3
931,792 + EX28DRAFT_0933 0.25 -2.0
931,792 + EX28DRAFT_0933 0.25 -2.7
931,793 - EX28DRAFT_0933 0.25 -3.7
931,849 + EX28DRAFT_0933 0.30 -2.7
932,127 - EX28DRAFT_0933 0.53 -0.4
932,127 - EX28DRAFT_0933 0.53 -0.4
932,127 - EX28DRAFT_0933 0.53 -4.8
932,128 + EX28DRAFT_0933 0.53 -1.5
932,128 + EX28DRAFT_0933 0.53 -1.4
932,128 + EX28DRAFT_0933 0.53 -3.1
932,129 - EX28DRAFT_0933 0.53 -1.4
932,129 - EX28DRAFT_0933 0.53 -3.3
932,129 - EX28DRAFT_0933 0.53 -4.2
932,129 - EX28DRAFT_0933 0.53 -2.7
932,129 - EX28DRAFT_0933 0.53 -3.8
932,129 - EX28DRAFT_0933 0.53 -0.4
932,143 + EX28DRAFT_0933 0.55 -0.2
932,143 + EX28DRAFT_0933 0.55 -3.5
932,144 - EX28DRAFT_0933 0.55 -3.0
932,287 + EX28DRAFT_0933 0.67 -2.0
932,287 + EX28DRAFT_0933 0.67 -2.7
932,287 + EX28DRAFT_0933 0.67 -4.2
932,288 - EX28DRAFT_0933 0.67 -1.7
932,427 - EX28DRAFT_0933 0.78 -3.8
932,464 + EX28DRAFT_0933 0.81 -3.4
932,638 + -3.4
932,639 - -1.7
932,639 - -1.7
932,639 - -3.7
932,673 + -1.9
932,673 + -1.0
932,674 - -3.2
932,697 - -1.2
932,700 - -0.5
932,749 - -2.2
932,764 + -1.4
932,812 + -0.4
932,813 - -2.9
932,830 + -3.2
932,927 + EX28DRAFT_0934 0.17 -2.9
932,927 + EX28DRAFT_0934 0.17 -3.7
932,928 - EX28DRAFT_0934 0.17 -3.3
932,931 + EX28DRAFT_0934 0.17 -3.0
932,931 + EX28DRAFT_0934 0.17 -2.9
932,932 - EX28DRAFT_0934 0.17 -3.3
932,964 + EX28DRAFT_0934 0.20 -1.0
932,965 - EX28DRAFT_0934 0.20 -2.8
933,032 + EX28DRAFT_0934 0.25 -3.3
933,033 - EX28DRAFT_0934 0.25 -3.7
933,108 + EX28DRAFT_0934 0.30 -4.1
933,108 + EX28DRAFT_0934 0.30 -3.3
933,108 + EX28DRAFT_0934 0.30 +0.6
933,134 + EX28DRAFT_0934 0.32 -1.6
933,134 + EX28DRAFT_0934 0.32 -1.0
933,134 + EX28DRAFT_0934 0.32 -2.9
933,135 - EX28DRAFT_0934 0.32 -3.6
933,135 - EX28DRAFT_0934 0.32 -2.6
933,163 - EX28DRAFT_0934 0.34 -3.2
933,163 - EX28DRAFT_0934 0.34 -2.7
933,377 - EX28DRAFT_0934 0.50 -2.3
933,377 - EX28DRAFT_0934 0.50 -0.4
933,669 - EX28DRAFT_0934 0.72 -1.0
933,669 - EX28DRAFT_0934 0.72 -3.1
933,702 + EX28DRAFT_0934 0.74 -1.0
933,706 - EX28DRAFT_0934 0.74 -2.4
933,824 + EX28DRAFT_0934 0.83 -1.7
933,935 + +0.6
934,111 + -0.4
934,112 - -0.4
934,112 - -3.4
934,112 - -3.2
934,228 + EX28DRAFT_0935 0.11 -1.2
934,290 - EX28DRAFT_0935 0.15 -2.6
934,290 - EX28DRAFT_0935 0.15 -1.6
934,326 - EX28DRAFT_0935 0.17 -1.7
934,326 - EX28DRAFT_0935 0.17 -0.5
934,596 - EX28DRAFT_0935 0.34 -2.7
934,662 + EX28DRAFT_0935 0.38 -4.3
934,674 + EX28DRAFT_0935 0.39 +0.2
934,789 - EX28DRAFT_0935 0.46 -1.2
934,801 - EX28DRAFT_0935 0.47 -2.2
934,828 - EX28DRAFT_0935 0.48 -2.7

Or see this region's nucleotide sequence