Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0408

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0407 and EX28DRAFT_0408 are separated by 79 nucleotidesEX28DRAFT_0408 and EX28DRAFT_0409 are separated by 15 nucleotides EX28DRAFT_0407: EX28DRAFT_0407 - ABC-type sugar transport system, periplasmic component, at 384,377 to 385,375 _0407 EX28DRAFT_0408: EX28DRAFT_0408 - ABC-type sugar transport system, ATPase component, at 385,455 to 386,975 _0408 EX28DRAFT_0409: EX28DRAFT_0409 - ABC-type glucose/galactose transport system, permease component, at 386,991 to 388,001 _0409 Position (kb) 385 386 387Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 384.473 kb on + strandat 384.475 kb on + strandat 384.475 kb on + strandat 384.475 kb on + strandat 384.476 kb on - strandat 384.476 kb on - strandat 384.476 kb on - strandat 384.479 kb on + strand, within EX28DRAFT_0407at 384.479 kb on + strand, within EX28DRAFT_0407at 384.749 kb on + strand, within EX28DRAFT_0407at 384.750 kb on - strand, within EX28DRAFT_0407at 384.750 kb on - strand, within EX28DRAFT_0407at 384.762 kb on - strand, within EX28DRAFT_0407at 384.764 kb on + strand, within EX28DRAFT_0407at 384.764 kb on + strand, within EX28DRAFT_0407at 384.765 kb on - strand, within EX28DRAFT_0407at 384.796 kb on + strand, within EX28DRAFT_0407at 384.797 kb on - strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.927 kb on - strand, within EX28DRAFT_0407at 384.927 kb on - strand, within EX28DRAFT_0407at 384.978 kb on + strand, within EX28DRAFT_0407at 384.979 kb on - strand, within EX28DRAFT_0407at 384.979 kb on - strand, within EX28DRAFT_0407at 385.101 kb on + strand, within EX28DRAFT_0407at 385.150 kb on - strand, within EX28DRAFT_0407at 385.328 kb on + strandat 385.329 kb on - strandat 385.329 kb on - strandat 385.373 kb on + strandat 385.373 kb on + strandat 385.373 kb on + strandat 385.373 kb on + strandat 385.422 kb on + strandat 385.448 kb on + strandat 385.449 kb on - strandat 385.450 kb on + strandat 385.451 kb on - strandat 385.455 kb on - strandat 385.550 kb on + strandat 385.550 kb on + strandat 385.574 kb on + strandat 385.607 kb on + strand, within EX28DRAFT_0408at 385.745 kb on - strand, within EX28DRAFT_0408at 385.776 kb on - strand, within EX28DRAFT_0408at 385.950 kb on + strand, within EX28DRAFT_0408at 385.950 kb on + strand, within EX28DRAFT_0408at 385.950 kb on + strand, within EX28DRAFT_0408at 385.950 kb on + strand, within EX28DRAFT_0408at 386.027 kb on + strand, within EX28DRAFT_0408at 386.038 kb on + strand, within EX28DRAFT_0408at 386.064 kb on + strand, within EX28DRAFT_0408at 386.064 kb on + strand, within EX28DRAFT_0408at 386.064 kb on + strand, within EX28DRAFT_0408at 386.064 kb on + strand, within EX28DRAFT_0408at 386.066 kb on + strand, within EX28DRAFT_0408at 386.066 kb on + strand, within EX28DRAFT_0408at 386.289 kb on - strand, within EX28DRAFT_0408at 386.415 kb on - strand, within EX28DRAFT_0408at 386.463 kb on - strand, within EX28DRAFT_0408at 386.466 kb on - strand, within EX28DRAFT_0408at 386.466 kb on - strand, within EX28DRAFT_0408at 386.508 kb on - strand, within EX28DRAFT_0408at 386.511 kb on + strand, within EX28DRAFT_0408at 386.511 kb on + strand, within EX28DRAFT_0408at 386.511 kb on + strand, within EX28DRAFT_0408at 386.512 kb on - strand, within EX28DRAFT_0408at 386.550 kb on - strand, within EX28DRAFT_0408at 386.550 kb on - strand, within EX28DRAFT_0408at 386.719 kb on + strand, within EX28DRAFT_0408at 386.835 kb on - strandat 386.837 kb on + strandat 386.838 kb on - strandat 387.024 kb on + strandat 387.041 kb on + strandat 387.045 kb on + strandat 387.045 kb on + strandat 387.045 kb on + strandat 387.046 kb on - strandat 387.059 kb on - strandat 387.061 kb on + strandat 387.093 kb on - strand, within EX28DRAFT_0409at 387.100 kb on + strand, within EX28DRAFT_0409at 387.146 kb on + strand, within EX28DRAFT_0409at 387.147 kb on - strand, within EX28DRAFT_0409at 387.362 kb on + strand, within EX28DRAFT_0409at 387.365 kb on + strand, within EX28DRAFT_0409at 387.375 kb on + strand, within EX28DRAFT_0409at 387.411 kb on - strand, within EX28DRAFT_0409at 387.444 kb on + strand, within EX28DRAFT_0409at 387.445 kb on - strand, within EX28DRAFT_0409at 387.543 kb on + strand, within EX28DRAFT_0409at 387.543 kb on + strand, within EX28DRAFT_0409at 387.543 kb on + strand, within EX28DRAFT_0409at 387.544 kb on - strand, within EX28DRAFT_0409at 387.544 kb on - strand, within EX28DRAFT_0409at 387.544 kb on - strand, within EX28DRAFT_0409at 387.545 kb on + strand, within EX28DRAFT_0409at 387.545 kb on + strand, within EX28DRAFT_0409at 387.555 kb on + strand, within EX28DRAFT_0409at 387.714 kb on + strand, within EX28DRAFT_0409at 387.780 kb on + strand, within EX28DRAFT_0409at 387.781 kb on - strand, within EX28DRAFT_0409at 387.930 kb on + strandat 387.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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384,473 + -0.1
384,475 + -0.3
384,475 + -2.1
384,475 + -0.2
384,476 - +0.4
384,476 - -1.8
384,476 - +1.8
384,479 + EX28DRAFT_0407 0.10 +0.4
384,479 + EX28DRAFT_0407 0.10 +1.2
384,749 + EX28DRAFT_0407 0.37 -0.0
384,750 - EX28DRAFT_0407 0.37 -0.7
384,750 - EX28DRAFT_0407 0.37 +0.1
384,762 - EX28DRAFT_0407 0.39 +0.3
384,764 + EX28DRAFT_0407 0.39 +0.1
384,764 + EX28DRAFT_0407 0.39 -1.5
384,765 - EX28DRAFT_0407 0.39 -0.8
384,796 + EX28DRAFT_0407 0.42 -3.6
384,797 - EX28DRAFT_0407 0.42 +0.3
384,926 + EX28DRAFT_0407 0.55 -1.7
384,926 + EX28DRAFT_0407 0.55 +0.1
384,926 + EX28DRAFT_0407 0.55 +0.3
384,926 + EX28DRAFT_0407 0.55 -0.4
384,926 + EX28DRAFT_0407 0.55 -0.1
384,927 - EX28DRAFT_0407 0.55 -0.1
384,927 - EX28DRAFT_0407 0.55 -0.7
384,978 + EX28DRAFT_0407 0.60 +0.2
384,979 - EX28DRAFT_0407 0.60 +0.3
384,979 - EX28DRAFT_0407 0.60 +0.2
385,101 + EX28DRAFT_0407 0.72 +0.0
385,150 - EX28DRAFT_0407 0.77 -0.0
385,328 + -0.1
385,329 - +0.9
385,329 - -0.9
385,373 + +0.9
385,373 + +0.4
385,373 + +0.4
385,373 + -0.2
385,422 + -0.0
385,448 + +0.4
385,449 - +0.1
385,450 + +0.3
385,451 - +0.3
385,455 - +0.5
385,550 + +0.3
385,550 + +0.0
385,574 + -0.1
385,607 + EX28DRAFT_0408 0.10 +0.1
385,745 - EX28DRAFT_0408 0.19 +2.3
385,776 - EX28DRAFT_0408 0.21 +1.0
385,950 + EX28DRAFT_0408 0.33 -0.7
385,950 + EX28DRAFT_0408 0.33 +0.4
385,950 + EX28DRAFT_0408 0.33 -0.3
385,950 + EX28DRAFT_0408 0.33 -0.3
386,027 + EX28DRAFT_0408 0.38 -0.7
386,038 + EX28DRAFT_0408 0.38 +2.1
386,064 + EX28DRAFT_0408 0.40 +0.2
386,064 + EX28DRAFT_0408 0.40 -0.1
386,064 + EX28DRAFT_0408 0.40 +0.0
386,064 + EX28DRAFT_0408 0.40 +0.1
386,066 + EX28DRAFT_0408 0.40 +0.9
386,066 + EX28DRAFT_0408 0.40 +0.2
386,289 - EX28DRAFT_0408 0.55 +0.9
386,415 - EX28DRAFT_0408 0.63 +0.5
386,463 - EX28DRAFT_0408 0.66 +0.2
386,466 - EX28DRAFT_0408 0.66 +0.5
386,466 - EX28DRAFT_0408 0.66 +0.5
386,508 - EX28DRAFT_0408 0.69 -0.0
386,511 + EX28DRAFT_0408 0.69 -0.0
386,511 + EX28DRAFT_0408 0.69 +0.0
386,511 + EX28DRAFT_0408 0.69 -0.4
386,512 - EX28DRAFT_0408 0.69 +0.7
386,550 - EX28DRAFT_0408 0.72 -0.7
386,550 - EX28DRAFT_0408 0.72 +0.7
386,719 + EX28DRAFT_0408 0.83 -0.7
386,835 - -0.1
386,837 + -0.4
386,838 - -0.4
387,024 + -0.4
387,041 + -1.4
387,045 + -0.3
387,045 + -0.4
387,045 + +0.9
387,046 - -1.1
387,059 - -0.4
387,061 + +0.4
387,093 - EX28DRAFT_0409 0.10 +0.4
387,100 + EX28DRAFT_0409 0.11 +0.1
387,146 + EX28DRAFT_0409 0.15 -0.2
387,147 - EX28DRAFT_0409 0.15 -0.2
387,362 + EX28DRAFT_0409 0.37 +0.6
387,365 + EX28DRAFT_0409 0.37 +0.8
387,375 + EX28DRAFT_0409 0.38 +0.3
387,411 - EX28DRAFT_0409 0.42 +0.6
387,444 + EX28DRAFT_0409 0.45 +0.7
387,445 - EX28DRAFT_0409 0.45 +1.9
387,543 + EX28DRAFT_0409 0.55 +3.2
387,543 + EX28DRAFT_0409 0.55 -0.5
387,543 + EX28DRAFT_0409 0.55 +0.2
387,544 - EX28DRAFT_0409 0.55 +0.1
387,544 - EX28DRAFT_0409 0.55 +0.9
387,544 - EX28DRAFT_0409 0.55 -1.1
387,545 + EX28DRAFT_0409 0.55 +1.0
387,545 + EX28DRAFT_0409 0.55 -0.1
387,555 + EX28DRAFT_0409 0.56 +0.9
387,714 + EX28DRAFT_0409 0.72 +0.9
387,780 + EX28DRAFT_0409 0.78 +0.6
387,781 - EX28DRAFT_0409 0.78 +0.3
387,930 + -0.1
387,936 - +0.7

Or see this region's nucleotide sequence