Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21420

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21415 and CA264_21420 are separated by 107 nucleotidesCA264_21420 and CA264_21425 are separated by 112 nucleotides CA264_21415: CA264_21415 - IS256 family transposase, at 147,224 to 148,429 _21415 CA264_21420: CA264_21420 - hypothetical protein, at 148,537 to 148,746 _21420 CA264_21425: CA264_21425 - copper-translocating P-type ATPase, at 148,859 to 151,126 _21425 Position (kb) 148 149Strain fitness (log2 ratio) -2 -1 0 1 2at 147.636 kb on + strand, within CA264_21415at 147.948 kb on + strand, within CA264_21415at 147.948 kb on + strand, within CA264_21415at 148.045 kb on - strand, within CA264_21415at 148.193 kb on + strand, within CA264_21415at 148.229 kb on - strand, within CA264_21415at 148.229 kb on - strand, within CA264_21415at 148.341 kb on + strandat 148.341 kb on + strandat 148.342 kb on - strandat 148.342 kb on - strandat 148.501 kb on - strandat 148.505 kb on - strandat 148.508 kb on + strandat 148.542 kb on + strandat 148.554 kb on + strandat 148.571 kb on - strand, within CA264_21420at 148.678 kb on - strand, within CA264_21420at 148.691 kb on - strand, within CA264_21420at 148.760 kb on + strandat 148.760 kb on + strandat 148.769 kb on + strandat 148.773 kb on + strandat 148.774 kb on - strandat 148.774 kb on - strandat 148.807 kb on - strandat 148.883 kb on + strandat 148.895 kb on - strandat 148.899 kb on - strandat 148.959 kb on + strandat 148.960 kb on - strandat 148.993 kb on + strandat 148.993 kb on + strandat 148.997 kb on + strandat 148.998 kb on - strandat 149.007 kb on + strandat 149.008 kb on - strandat 149.061 kb on - strandat 149.074 kb on + strandat 149.129 kb on + strand, within CA264_21425at 149.129 kb on + strand, within CA264_21425at 149.130 kb on - strand, within CA264_21425at 149.130 kb on - strand, within CA264_21425at 149.153 kb on + strand, within CA264_21425at 149.154 kb on - strand, within CA264_21425at 149.154 kb on - strand, within CA264_21425at 149.154 kb on - strand, within CA264_21425at 149.159 kb on + strand, within CA264_21425at 149.159 kb on + strand, within CA264_21425at 149.159 kb on + strand, within CA264_21425at 149.160 kb on - strand, within CA264_21425at 149.160 kb on - strand, within CA264_21425at 149.213 kb on + strand, within CA264_21425at 149.213 kb on + strand, within CA264_21425at 149.216 kb on + strand, within CA264_21425at 149.216 kb on + strand, within CA264_21425at 149.217 kb on - strand, within CA264_21425at 149.257 kb on + strand, within CA264_21425at 149.281 kb on + strand, within CA264_21425at 149.284 kb on - strand, within CA264_21425at 149.291 kb on + strand, within CA264_21425at 149.298 kb on - strand, within CA264_21425at 149.349 kb on + strand, within CA264_21425at 149.350 kb on - strand, within CA264_21425at 149.350 kb on - strand, within CA264_21425at 149.350 kb on - strand, within CA264_21425at 149.359 kb on + strand, within CA264_21425at 149.359 kb on + strand, within CA264_21425at 149.360 kb on - strand, within CA264_21425at 149.360 kb on - strand, within CA264_21425at 149.424 kb on - strand, within CA264_21425at 149.426 kb on + strand, within CA264_21425at 149.432 kb on + strand, within CA264_21425at 149.433 kb on - strand, within CA264_21425at 149.440 kb on + strand, within CA264_21425at 149.461 kb on + strand, within CA264_21425at 149.522 kb on + strand, within CA264_21425at 149.522 kb on + strand, within CA264_21425at 149.523 kb on - strand, within CA264_21425at 149.523 kb on - strand, within CA264_21425at 149.538 kb on - strand, within CA264_21425at 149.545 kb on + strand, within CA264_21425at 149.545 kb on + strand, within CA264_21425at 149.546 kb on - strand, within CA264_21425at 149.551 kb on + strand, within CA264_21425at 149.603 kb on + strand, within CA264_21425at 149.604 kb on - strand, within CA264_21425at 149.604 kb on - strand, within CA264_21425at 149.636 kb on + strand, within CA264_21425at 149.712 kb on - strand, within CA264_21425at 149.712 kb on - strand, within CA264_21425at 149.712 kb on - strand, within CA264_21425

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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147,636 + CA264_21415 0.34 -0.6
147,948 + CA264_21415 0.60 -0.2
147,948 + CA264_21415 0.60 +0.7
148,045 - CA264_21415 0.68 +0.2
148,193 + CA264_21415 0.80 -0.4
148,229 - CA264_21415 0.83 +1.7
148,229 - CA264_21415 0.83 -0.0
148,341 + +0.3
148,341 + +0.4
148,342 - +0.2
148,342 - +1.2
148,501 - -0.6
148,505 - -0.9
148,508 + +0.8
148,542 + -0.2
148,554 + -1.0
148,571 - CA264_21420 0.16 -0.3
148,678 - CA264_21420 0.67 -0.9
148,691 - CA264_21420 0.73 -0.6
148,760 + -0.3
148,760 + -0.1
148,769 + -1.0
148,773 + -0.5
148,774 - +0.4
148,774 - +1.1
148,807 - -0.3
148,883 + -0.0
148,895 - -0.7
148,899 - +0.3
148,959 + +0.2
148,960 - -1.1
148,993 + +0.3
148,993 + -0.5
148,997 + -0.1
148,998 - -0.8
149,007 + +0.0
149,008 - +0.9
149,061 - -0.5
149,074 + -0.3
149,129 + CA264_21425 0.12 +0.4
149,129 + CA264_21425 0.12 +0.2
149,130 - CA264_21425 0.12 +0.3
149,130 - CA264_21425 0.12 -2.4
149,153 + CA264_21425 0.13 +0.4
149,154 - CA264_21425 0.13 +1.7
149,154 - CA264_21425 0.13 -0.5
149,154 - CA264_21425 0.13 -0.2
149,159 + CA264_21425 0.13 -0.5
149,159 + CA264_21425 0.13 -0.0
149,159 + CA264_21425 0.13 -0.6
149,160 - CA264_21425 0.13 +0.0
149,160 - CA264_21425 0.13 +0.2
149,213 + CA264_21425 0.16 -1.2
149,213 + CA264_21425 0.16 +0.2
149,216 + CA264_21425 0.16 +0.3
149,216 + CA264_21425 0.16 -0.0
149,217 - CA264_21425 0.16 -0.3
149,257 + CA264_21425 0.18 +0.1
149,281 + CA264_21425 0.19 +0.4
149,284 - CA264_21425 0.19 -0.3
149,291 + CA264_21425 0.19 +0.2
149,298 - CA264_21425 0.19 -0.1
149,349 + CA264_21425 0.22 -0.2
149,350 - CA264_21425 0.22 -0.2
149,350 - CA264_21425 0.22 -0.8
149,350 - CA264_21425 0.22 +0.0
149,359 + CA264_21425 0.22 +2.1
149,359 + CA264_21425 0.22 +1.1
149,360 - CA264_21425 0.22 +0.1
149,360 - CA264_21425 0.22 -0.0
149,424 - CA264_21425 0.25 +1.1
149,426 + CA264_21425 0.25 -0.6
149,432 + CA264_21425 0.25 -0.3
149,433 - CA264_21425 0.25 -1.4
149,440 + CA264_21425 0.26 -0.8
149,461 + CA264_21425 0.27 -0.1
149,522 + CA264_21425 0.29 -0.1
149,522 + CA264_21425 0.29 -0.3
149,523 - CA264_21425 0.29 +0.3
149,523 - CA264_21425 0.29 -0.3
149,538 - CA264_21425 0.30 +0.0
149,545 + CA264_21425 0.30 -0.2
149,545 + CA264_21425 0.30 -1.6
149,546 - CA264_21425 0.30 +0.2
149,551 + CA264_21425 0.31 +0.0
149,603 + CA264_21425 0.33 -0.2
149,604 - CA264_21425 0.33 +0.5
149,604 - CA264_21425 0.33 +0.5
149,636 + CA264_21425 0.34 -0.0
149,712 - CA264_21425 0.38 +1.2
149,712 - CA264_21425 0.38 -2.5
149,712 - CA264_21425 0.38 -0.0

Or see this region's nucleotide sequence