Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18750

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18745 and CA264_18750 are separated by 202 nucleotidesCA264_18750 and CA264_18755 are separated by 650 nucleotides CA264_18745: CA264_18745 - protein sphX, at 4,351,037 to 4,352,032 _18745 CA264_18750: CA264_18750 - FmdC precursor, at 4,352,235 to 4,353,386 _18750 CA264_18755: CA264_18755 - hypothetical protein, at 4,354,037 to 4,355,431 _18755 Position (kb) 4352 4353 4354Strain fitness (log2 ratio) -2 -1 0 1 2at 4351.266 kb on - strand, within CA264_18745at 4351.266 kb on - strand, within CA264_18745at 4351.472 kb on + strand, within CA264_18745at 4351.473 kb on - strand, within CA264_18745at 4351.486 kb on + strand, within CA264_18745at 4351.491 kb on + strand, within CA264_18745at 4351.498 kb on - strand, within CA264_18745at 4351.658 kb on + strand, within CA264_18745at 4351.659 kb on - strand, within CA264_18745at 4351.659 kb on - strand, within CA264_18745at 4351.664 kb on + strand, within CA264_18745at 4351.686 kb on - strand, within CA264_18745at 4351.702 kb on - strand, within CA264_18745at 4351.769 kb on - strand, within CA264_18745at 4351.786 kb on + strand, within CA264_18745at 4351.796 kb on - strand, within CA264_18745at 4351.857 kb on + strand, within CA264_18745at 4351.858 kb on - strand, within CA264_18745at 4351.858 kb on - strand, within CA264_18745at 4351.883 kb on - strand, within CA264_18745at 4351.978 kb on + strandat 4352.032 kb on + strandat 4352.032 kb on + strandat 4352.104 kb on + strandat 4352.104 kb on + strandat 4352.105 kb on - strandat 4352.124 kb on - strandat 4352.124 kb on - strandat 4352.152 kb on + strandat 4352.152 kb on + strandat 4352.304 kb on + strandat 4352.341 kb on + strandat 4352.345 kb on + strandat 4352.346 kb on - strandat 4352.346 kb on - strandat 4352.346 kb on - strandat 4352.346 kb on - strandat 4352.346 kb on - strandat 4352.362 kb on + strand, within CA264_18750at 4352.405 kb on - strand, within CA264_18750at 4352.414 kb on - strand, within CA264_18750at 4352.586 kb on - strand, within CA264_18750at 4352.675 kb on + strand, within CA264_18750at 4352.741 kb on - strand, within CA264_18750at 4352.782 kb on - strand, within CA264_18750at 4352.795 kb on - strand, within CA264_18750at 4353.069 kb on + strand, within CA264_18750at 4353.071 kb on + strand, within CA264_18750at 4353.146 kb on + strand, within CA264_18750at 4353.147 kb on - strand, within CA264_18750at 4353.158 kb on + strand, within CA264_18750at 4353.166 kb on + strand, within CA264_18750at 4353.167 kb on - strand, within CA264_18750at 4353.186 kb on - strand, within CA264_18750at 4353.282 kb on - strandat 4353.367 kb on - strandat 4353.367 kb on - strandat 4353.381 kb on + strandat 4353.381 kb on + strandat 4353.381 kb on + strandat 4353.382 kb on - strandat 4353.382 kb on - strandat 4353.386 kb on + strandat 4353.386 kb on + strandat 4353.405 kb on + strandat 4353.459 kb on + strandat 4353.465 kb on + strandat 4353.466 kb on - strandat 4353.466 kb on - strandat 4353.492 kb on + strandat 4353.505 kb on - strandat 4353.505 kb on - strandat 4353.508 kb on + strandat 4353.508 kb on + strandat 4353.508 kb on + strandat 4353.509 kb on - strandat 4353.509 kb on - strandat 4353.509 kb on - strandat 4353.509 kb on - strandat 4353.509 kb on - strandat 4353.509 kb on - strandat 4353.510 kb on + strandat 4353.510 kb on + strandat 4353.510 kb on + strandat 4353.511 kb on - strandat 4353.511 kb on - strandat 4353.511 kb on - strandat 4353.561 kb on + strandat 4353.596 kb on + strandat 4353.643 kb on + strandat 4353.650 kb on - strandat 4353.675 kb on - strandat 4353.731 kb on - strandat 4353.832 kb on + strandat 4353.833 kb on - strandat 4353.833 kb on - strandat 4353.854 kb on + strandat 4353.865 kb on + strandat 4353.897 kb on - strandat 4353.907 kb on + strandat 4353.918 kb on + strandat 4353.933 kb on - strandat 4353.965 kb on - strandat 4354.021 kb on + strandat 4354.022 kb on - strandat 4354.167 kb on + strandat 4354.186 kb on + strand, within CA264_18755at 4354.295 kb on - strand, within CA264_18755at 4354.382 kb on - strand, within CA264_18755

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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4,351,266 - CA264_18745 0.23 -0.3
4,351,266 - CA264_18745 0.23 -1.2
4,351,472 + CA264_18745 0.44 -1.5
4,351,473 - CA264_18745 0.44 -0.5
4,351,486 + CA264_18745 0.45 +1.2
4,351,491 + CA264_18745 0.46 +0.5
4,351,498 - CA264_18745 0.46 -0.4
4,351,658 + CA264_18745 0.62 -0.7
4,351,659 - CA264_18745 0.62 +0.3
4,351,659 - CA264_18745 0.62 -1.0
4,351,664 + CA264_18745 0.63 -0.1
4,351,686 - CA264_18745 0.65 -1.6
4,351,702 - CA264_18745 0.67 +0.5
4,351,769 - CA264_18745 0.73 +0.7
4,351,786 + CA264_18745 0.75 +0.3
4,351,796 - CA264_18745 0.76 -0.0
4,351,857 + CA264_18745 0.82 -1.0
4,351,858 - CA264_18745 0.82 +0.1
4,351,858 - CA264_18745 0.82 -0.5
4,351,883 - CA264_18745 0.85 -0.5
4,351,978 + +0.6
4,352,032 + +1.8
4,352,032 + +0.2
4,352,104 + +1.2
4,352,104 + +0.3
4,352,105 - -0.3
4,352,124 - -0.9
4,352,124 - -0.7
4,352,152 + -0.4
4,352,152 + -0.9
4,352,304 + -0.0
4,352,341 + +0.0
4,352,345 + -0.5
4,352,346 - +0.1
4,352,346 - +1.2
4,352,346 - -0.3
4,352,346 - +0.9
4,352,346 - -1.1
4,352,362 + CA264_18750 0.11 +2.0
4,352,405 - CA264_18750 0.15 +0.2
4,352,414 - CA264_18750 0.16 -0.1
4,352,586 - CA264_18750 0.30 -0.7
4,352,675 + CA264_18750 0.38 -0.7
4,352,741 - CA264_18750 0.44 +0.2
4,352,782 - CA264_18750 0.47 +0.6
4,352,795 - CA264_18750 0.49 -0.2
4,353,069 + CA264_18750 0.72 +0.2
4,353,071 + CA264_18750 0.73 +0.3
4,353,146 + CA264_18750 0.79 +0.4
4,353,147 - CA264_18750 0.79 -0.8
4,353,158 + CA264_18750 0.80 -1.6
4,353,166 + CA264_18750 0.81 -1.1
4,353,167 - CA264_18750 0.81 +0.3
4,353,186 - CA264_18750 0.83 +0.6
4,353,282 - -0.7
4,353,367 - -0.3
4,353,367 - -0.7
4,353,381 + -0.2
4,353,381 + -1.2
4,353,381 + +0.4
4,353,382 - +0.3
4,353,382 - -0.4
4,353,386 + -0.3
4,353,386 + +0.1
4,353,405 + -0.5
4,353,459 + -0.1
4,353,465 + -0.5
4,353,466 - -0.0
4,353,466 - -0.1
4,353,492 + -0.1
4,353,505 - +0.1
4,353,505 - -0.3
4,353,508 + +0.8
4,353,508 + -0.2
4,353,508 + +0.9
4,353,509 - +0.2
4,353,509 - -0.6
4,353,509 - +1.5
4,353,509 - +0.5
4,353,509 - -0.0
4,353,509 - +0.1
4,353,510 + -0.1
4,353,510 + -0.5
4,353,510 + +1.5
4,353,511 - +1.1
4,353,511 - -0.4
4,353,511 - -1.1
4,353,561 + -0.0
4,353,596 + +0.2
4,353,643 + -0.2
4,353,650 - -0.2
4,353,675 - -1.3
4,353,731 - +0.2
4,353,832 + -0.1
4,353,833 - -0.9
4,353,833 - -0.2
4,353,854 + +1.6
4,353,865 + -0.8
4,353,897 - -0.1
4,353,907 + -0.1
4,353,918 + +0.8
4,353,933 - -0.1
4,353,965 - -1.2
4,354,021 + +0.1
4,354,022 - +1.2
4,354,167 + +1.8
4,354,186 + CA264_18755 0.11 +1.8
4,354,295 - CA264_18755 0.18 -0.2
4,354,382 - CA264_18755 0.25 -2.3

Or see this region's nucleotide sequence