Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15540 and CA264_15545 are separated by 145 nucleotides CA264_15545 and CA264_15550 are separated by 185 nucleotides CA264_15550 and CA264_15555 are separated by 18 nucleotides
CA264_15540: CA264_15540 - hypothetical protein, at 3,637,942 to 3,638,724
_15540
CA264_15545: CA264_15545 - YajQ family cyclic di-GMP-binding protein, at 3,638,870 to 3,639,367
_15545
CA264_15550: CA264_15550 - GNAT family N-acetyltransferase, at 3,639,553 to 3,639,984
_15550
CA264_15555: CA264_15555 - hypothetical protein, at 3,640,003 to 3,640,557
_15555
Position (kb)
3638
3639
3640 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3637.936 kb on - strand at 3637.936 kb on - strand at 3637.939 kb on + strand at 3637.940 kb on - strand at 3638.067 kb on + strand, within CA264_15540 at 3638.067 kb on + strand, within CA264_15540 at 3638.068 kb on - strand, within CA264_15540 at 3638.112 kb on + strand, within CA264_15540 at 3638.112 kb on + strand, within CA264_15540 at 3638.182 kb on + strand, within CA264_15540 at 3638.186 kb on + strand, within CA264_15540 at 3638.187 kb on - strand, within CA264_15540 at 3638.187 kb on - strand, within CA264_15540 at 3638.187 kb on - strand, within CA264_15540 at 3638.479 kb on - strand, within CA264_15540 at 3638.533 kb on - strand, within CA264_15540 at 3638.533 kb on - strand, within CA264_15540 at 3638.646 kb on + strand at 3638.646 kb on + strand at 3638.646 kb on + strand at 3638.646 kb on + strand at 3638.646 kb on + strand at 3638.647 kb on - strand at 3638.647 kb on - strand at 3638.647 kb on - strand at 3638.653 kb on - strand at 3638.692 kb on + strand at 3638.693 kb on - strand at 3638.724 kb on + strand at 3638.724 kb on + strand at 3638.725 kb on - strand at 3638.730 kb on + strand at 3638.730 kb on + strand at 3638.730 kb on + strand at 3638.731 kb on - strand at 3638.766 kb on + strand at 3638.799 kb on + strand at 3638.799 kb on + strand at 3638.857 kb on + strand at 3639.017 kb on - strand, within CA264_15545 at 3639.074 kb on + strand, within CA264_15545 at 3639.111 kb on + strand, within CA264_15545 at 3639.246 kb on + strand, within CA264_15545 at 3639.251 kb on + strand, within CA264_15545 at 3639.252 kb on - strand, within CA264_15545 at 3639.252 kb on - strand, within CA264_15545 at 3639.339 kb on - strand at 3639.339 kb on - strand at 3639.339 kb on - strand at 3639.339 kb on - strand at 3639.348 kb on - strand at 3639.348 kb on - strand at 3639.433 kb on + strand at 3639.456 kb on - strand at 3639.504 kb on + strand at 3639.504 kb on + strand at 3639.535 kb on - strand at 3639.541 kb on - strand at 3639.552 kb on + strand at 3639.553 kb on - strand at 3639.553 kb on - strand at 3639.553 kb on - strand at 3639.563 kb on + strand at 3639.563 kb on + strand at 3639.563 kb on + strand at 3639.596 kb on - strand at 3639.599 kb on - strand, within CA264_15550 at 3639.695 kb on + strand, within CA264_15550 at 3639.920 kb on + strand, within CA264_15550 at 3639.935 kb on - strand, within CA264_15550 at 3639.953 kb on + strand at 3639.953 kb on + strand at 3639.954 kb on - strand at 3640.003 kb on - strand at 3640.112 kb on + strand, within CA264_15555 at 3640.127 kb on - strand, within CA264_15555 at 3640.127 kb on - strand, within CA264_15555 at 3640.193 kb on - strand, within CA264_15555 at 3640.202 kb on - strand, within CA264_15555 at 3640.223 kb on - strand, within CA264_15555
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 3,637,936 - +0.0 3,637,936 - -1.6 3,637,939 + -0.6 3,637,940 - -0.1 3,638,067 + CA264_15540 0.16 -0.6 3,638,067 + CA264_15540 0.16 +0.4 3,638,068 - CA264_15540 0.16 +1.2 3,638,112 + CA264_15540 0.22 -0.8 3,638,112 + CA264_15540 0.22 -0.2 3,638,182 + CA264_15540 0.31 -0.1 3,638,186 + CA264_15540 0.31 -0.2 3,638,187 - CA264_15540 0.31 +0.4 3,638,187 - CA264_15540 0.31 -0.2 3,638,187 - CA264_15540 0.31 +1.4 3,638,479 - CA264_15540 0.69 -0.6 3,638,533 - CA264_15540 0.75 -0.5 3,638,533 - CA264_15540 0.75 +0.4 3,638,646 + -0.4 3,638,646 + +0.0 3,638,646 + +2.2 3,638,646 + +1.7 3,638,646 + -0.4 3,638,647 - +1.5 3,638,647 - -0.0 3,638,647 - -0.5 3,638,653 - -0.6 3,638,692 + -0.9 3,638,693 - -0.2 3,638,724 + +0.2 3,638,724 + -0.0 3,638,725 - +0.8 3,638,730 + +0.1 3,638,730 + -0.2 3,638,730 + -0.7 3,638,731 - +2.2 3,638,766 + +0.3 3,638,799 + +0.3 3,638,799 + -0.2 3,638,857 + -0.1 3,639,017 - CA264_15545 0.30 +0.2 3,639,074 + CA264_15545 0.41 +0.3 3,639,111 + CA264_15545 0.48 +0.5 3,639,246 + CA264_15545 0.76 +0.7 3,639,251 + CA264_15545 0.77 -0.1 3,639,252 - CA264_15545 0.77 +0.8 3,639,252 - CA264_15545 0.77 +0.2 3,639,339 - -0.4 3,639,339 - +0.2 3,639,339 - -0.5 3,639,339 - +1.2 3,639,348 - -0.3 3,639,348 - -0.6 3,639,433 + +0.4 3,639,456 - +0.3 3,639,504 + -1.7 3,639,504 + +1.4 3,639,535 - -0.2 3,639,541 - +2.5 3,639,552 + -0.1 3,639,553 - -2.3 3,639,553 - -0.7 3,639,553 - -1.1 3,639,563 + -0.1 3,639,563 + -1.0 3,639,563 + -0.4 3,639,596 - +0.4 3,639,599 - CA264_15550 0.11 -0.4 3,639,695 + CA264_15550 0.33 +0.1 3,639,920 + CA264_15550 0.85 +1.2 3,639,935 - CA264_15550 0.88 +0.1 3,639,953 + -0.1 3,639,953 + +0.4 3,639,954 - -1.2 3,640,003 - +0.2 3,640,112 + CA264_15555 0.20 -0.8 3,640,127 - CA264_15555 0.22 -1.0 3,640,127 - CA264_15555 0.22 +0.9 3,640,193 - CA264_15555 0.34 +0.4 3,640,202 - CA264_15555 0.36 +0.9 3,640,223 - CA264_15555 0.40 -0.1
Or see this region's nucleotide sequence