Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15540

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15535 and CA264_15540 are separated by 140 nucleotidesCA264_15540 and CA264_15545 are separated by 145 nucleotidesCA264_15545 and CA264_15550 are separated by 185 nucleotides CA264_15535: CA264_15535 - hypothetical protein, at 3,635,627 to 3,637,801 _15535 CA264_15540: CA264_15540 - hypothetical protein, at 3,637,942 to 3,638,724 _15540 CA264_15545: CA264_15545 - YajQ family cyclic di-GMP-binding protein, at 3,638,870 to 3,639,367 _15545 CA264_15550: CA264_15550 - GNAT family N-acetyltransferase, at 3,639,553 to 3,639,984 _15550 Position (kb) 3637 3638 3639Strain fitness (log2 ratio) -2 -1 0 1 2at 3637.122 kb on + strand, within CA264_15535at 3637.140 kb on + strand, within CA264_15535at 3637.141 kb on - strand, within CA264_15535at 3637.284 kb on + strand, within CA264_15535at 3637.488 kb on + strand, within CA264_15535at 3637.489 kb on - strand, within CA264_15535at 3637.722 kb on - strandat 3637.724 kb on + strandat 3637.724 kb on + strandat 3637.724 kb on + strandat 3637.725 kb on - strandat 3637.728 kb on + strandat 3637.815 kb on - strandat 3637.826 kb on - strandat 3637.826 kb on - strandat 3637.836 kb on + strandat 3637.836 kb on + strandat 3637.837 kb on - strandat 3637.936 kb on - strandat 3637.936 kb on - strandat 3637.939 kb on + strandat 3637.940 kb on - strandat 3638.067 kb on + strand, within CA264_15540at 3638.067 kb on + strand, within CA264_15540at 3638.068 kb on - strand, within CA264_15540at 3638.112 kb on + strand, within CA264_15540at 3638.112 kb on + strand, within CA264_15540at 3638.182 kb on + strand, within CA264_15540at 3638.186 kb on + strand, within CA264_15540at 3638.187 kb on - strand, within CA264_15540at 3638.187 kb on - strand, within CA264_15540at 3638.187 kb on - strand, within CA264_15540at 3638.479 kb on - strand, within CA264_15540at 3638.533 kb on - strand, within CA264_15540at 3638.533 kb on - strand, within CA264_15540at 3638.646 kb on + strandat 3638.646 kb on + strandat 3638.646 kb on + strandat 3638.646 kb on + strandat 3638.646 kb on + strandat 3638.647 kb on - strandat 3638.647 kb on - strandat 3638.647 kb on - strandat 3638.653 kb on - strandat 3638.692 kb on + strandat 3638.693 kb on - strandat 3638.724 kb on + strandat 3638.724 kb on + strandat 3638.725 kb on - strandat 3638.730 kb on + strandat 3638.730 kb on + strandat 3638.730 kb on + strandat 3638.731 kb on - strandat 3638.766 kb on + strandat 3638.799 kb on + strandat 3638.799 kb on + strandat 3638.857 kb on + strandat 3639.017 kb on - strand, within CA264_15545at 3639.074 kb on + strand, within CA264_15545at 3639.111 kb on + strand, within CA264_15545at 3639.246 kb on + strand, within CA264_15545at 3639.251 kb on + strand, within CA264_15545at 3639.252 kb on - strand, within CA264_15545at 3639.252 kb on - strand, within CA264_15545at 3639.339 kb on - strandat 3639.339 kb on - strandat 3639.339 kb on - strandat 3639.339 kb on - strandat 3639.348 kb on - strandat 3639.348 kb on - strandat 3639.433 kb on + strandat 3639.456 kb on - strandat 3639.504 kb on + strandat 3639.504 kb on + strandat 3639.535 kb on - strandat 3639.541 kb on - strandat 3639.552 kb on + strandat 3639.553 kb on - strandat 3639.553 kb on - strandat 3639.553 kb on - strandat 3639.563 kb on + strandat 3639.563 kb on + strandat 3639.563 kb on + strandat 3639.596 kb on - strandat 3639.599 kb on - strand, within CA264_15550at 3639.695 kb on + strand, within CA264_15550

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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3,637,122 + CA264_15535 0.69 -0.7
3,637,140 + CA264_15535 0.70 -0.6
3,637,141 - CA264_15535 0.70 +0.1
3,637,284 + CA264_15535 0.76 +0.4
3,637,488 + CA264_15535 0.86 +0.9
3,637,489 - CA264_15535 0.86 -1.4
3,637,722 - -0.6
3,637,724 + -0.2
3,637,724 + +0.3
3,637,724 + -0.6
3,637,725 - -0.7
3,637,728 + +0.0
3,637,815 - +0.7
3,637,826 - -0.6
3,637,826 - +0.6
3,637,836 + +0.3
3,637,836 + -0.7
3,637,837 - -0.4
3,637,936 - +0.0
3,637,936 - -1.6
3,637,939 + -0.6
3,637,940 - -0.1
3,638,067 + CA264_15540 0.16 -0.6
3,638,067 + CA264_15540 0.16 +0.4
3,638,068 - CA264_15540 0.16 +1.2
3,638,112 + CA264_15540 0.22 -0.8
3,638,112 + CA264_15540 0.22 -0.2
3,638,182 + CA264_15540 0.31 -0.1
3,638,186 + CA264_15540 0.31 -0.2
3,638,187 - CA264_15540 0.31 +0.4
3,638,187 - CA264_15540 0.31 -0.2
3,638,187 - CA264_15540 0.31 +1.4
3,638,479 - CA264_15540 0.69 -0.6
3,638,533 - CA264_15540 0.75 -0.5
3,638,533 - CA264_15540 0.75 +0.4
3,638,646 + -0.4
3,638,646 + +0.0
3,638,646 + +2.2
3,638,646 + +1.7
3,638,646 + -0.4
3,638,647 - +1.5
3,638,647 - -0.0
3,638,647 - -0.5
3,638,653 - -0.6
3,638,692 + -0.9
3,638,693 - -0.2
3,638,724 + +0.2
3,638,724 + -0.0
3,638,725 - +0.8
3,638,730 + +0.1
3,638,730 + -0.2
3,638,730 + -0.7
3,638,731 - +2.2
3,638,766 + +0.3
3,638,799 + +0.3
3,638,799 + -0.2
3,638,857 + -0.1
3,639,017 - CA264_15545 0.30 +0.2
3,639,074 + CA264_15545 0.41 +0.3
3,639,111 + CA264_15545 0.48 +0.5
3,639,246 + CA264_15545 0.76 +0.7
3,639,251 + CA264_15545 0.77 -0.1
3,639,252 - CA264_15545 0.77 +0.8
3,639,252 - CA264_15545 0.77 +0.2
3,639,339 - -0.4
3,639,339 - +0.2
3,639,339 - -0.5
3,639,339 - +1.2
3,639,348 - -0.3
3,639,348 - -0.6
3,639,433 + +0.4
3,639,456 - +0.3
3,639,504 + -1.7
3,639,504 + +1.4
3,639,535 - -0.2
3,639,541 - +2.5
3,639,552 + -0.1
3,639,553 - -2.3
3,639,553 - -0.7
3,639,553 - -1.1
3,639,563 + -0.1
3,639,563 + -1.0
3,639,563 + -0.4
3,639,596 - +0.4
3,639,599 - CA264_15550 0.11 -0.4
3,639,695 + CA264_15550 0.33 +0.1

Or see this region's nucleotide sequence