Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15230

Experiment: m.b. sodium fluoride 12.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_15220 and CA264_15225 are separated by 11 nucleotidesCA264_15225 and CA264_15230 are separated by 65 nucleotidesCA264_15230 and CA264_15235 are separated by 46 nucleotides CA264_15220: CA264_15220 - outer membrane protein assembly factor BamA, at 3,564,730 to 3,567,228 _15220 CA264_15225: CA264_15225 - di-trans,poly-cis-decaprenylcistransferase, at 3,567,240 to 3,567,977 _15225 CA264_15230: CA264_15230 - hypothetical protein, at 3,568,043 to 3,568,810 _15230 CA264_15235: CA264_15235 - hypothetical protein, at 3,568,857 to 3,569,849 _15235 Position (kb) 3568 3569Strain fitness (log2 ratio) -2 -1 0 1 2at 3567.239 kb on - strandat 3567.250 kb on - strandat 3567.267 kb on - strandat 3567.267 kb on - strandat 3567.948 kb on + strandat 3567.957 kb on + strandat 3568.044 kb on + strandat 3568.044 kb on + strandat 3568.045 kb on - strandat 3568.115 kb on + strandat 3568.131 kb on + strand, within CA264_15230at 3568.161 kb on + strand, within CA264_15230at 3568.186 kb on - strand, within CA264_15230at 3568.186 kb on - strand, within CA264_15230at 3568.306 kb on - strand, within CA264_15230at 3568.350 kb on + strand, within CA264_15230at 3568.350 kb on + strand, within CA264_15230at 3568.350 kb on + strand, within CA264_15230at 3568.367 kb on - strand, within CA264_15230at 3568.413 kb on + strand, within CA264_15230at 3568.413 kb on + strand, within CA264_15230at 3568.414 kb on - strand, within CA264_15230at 3568.416 kb on + strand, within CA264_15230at 3568.417 kb on - strand, within CA264_15230at 3568.485 kb on + strand, within CA264_15230at 3568.489 kb on + strand, within CA264_15230at 3568.613 kb on + strand, within CA264_15230at 3568.627 kb on + strand, within CA264_15230at 3568.679 kb on + strand, within CA264_15230at 3568.680 kb on - strand, within CA264_15230at 3568.692 kb on - strand, within CA264_15230at 3568.757 kb on + strandat 3568.777 kb on + strandat 3568.812 kb on + strandat 3568.812 kb on + strandat 3568.828 kb on - strandat 3568.855 kb on + strandat 3568.856 kb on - strandat 3568.862 kb on + strandat 3568.895 kb on + strandat 3568.924 kb on + strandat 3568.925 kb on - strandat 3568.925 kb on - strandat 3568.925 kb on - strandat 3568.973 kb on - strandat 3568.991 kb on - strand, within CA264_15235at 3568.991 kb on - strand, within CA264_15235at 3568.991 kb on - strand, within CA264_15235at 3568.991 kb on - strand, within CA264_15235at 3568.991 kb on - strand, within CA264_15235at 3568.996 kb on - strand, within CA264_15235at 3568.996 kb on - strand, within CA264_15235at 3569.010 kb on - strand, within CA264_15235at 3569.097 kb on + strand, within CA264_15235at 3569.097 kb on + strand, within CA264_15235at 3569.100 kb on - strand, within CA264_15235at 3569.123 kb on + strand, within CA264_15235at 3569.127 kb on + strand, within CA264_15235at 3569.127 kb on + strand, within CA264_15235at 3569.128 kb on - strand, within CA264_15235at 3569.128 kb on - strand, within CA264_15235at 3569.166 kb on + strand, within CA264_15235at 3569.166 kb on + strand, within CA264_15235at 3569.177 kb on + strand, within CA264_15235at 3569.189 kb on - strand, within CA264_15235at 3569.201 kb on + strand, within CA264_15235at 3569.203 kb on + strand, within CA264_15235at 3569.203 kb on + strand, within CA264_15235at 3569.239 kb on - strand, within CA264_15235at 3569.248 kb on + strand, within CA264_15235at 3569.311 kb on + strand, within CA264_15235at 3569.312 kb on - strand, within CA264_15235at 3569.328 kb on - strand, within CA264_15235at 3569.381 kb on + strand, within CA264_15235at 3569.467 kb on - strand, within CA264_15235at 3569.632 kb on + strand, within CA264_15235at 3569.637 kb on - strand, within CA264_15235at 3569.637 kb on - strand, within CA264_15235at 3569.637 kb on - strand, within CA264_15235at 3569.639 kb on - strand, within CA264_15235at 3569.639 kb on - strand, within CA264_15235at 3569.643 kb on - strand, within CA264_15235at 3569.753 kb on - strandat 3569.789 kb on + strandat 3569.790 kb on - strandat 3569.790 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
remove
3,567,239 - +0.2
3,567,250 - -0.2
3,567,267 - +0.9
3,567,267 - +0.7
3,567,948 + +0.6
3,567,957 + -0.2
3,568,044 + +0.4
3,568,044 + -0.3
3,568,045 - +1.0
3,568,115 + -0.8
3,568,131 + CA264_15230 0.11 -0.7
3,568,161 + CA264_15230 0.15 -2.1
3,568,186 - CA264_15230 0.19 -0.7
3,568,186 - CA264_15230 0.19 -0.1
3,568,306 - CA264_15230 0.34 -1.4
3,568,350 + CA264_15230 0.40 -1.6
3,568,350 + CA264_15230 0.40 -1.1
3,568,350 + CA264_15230 0.40 -1.0
3,568,367 - CA264_15230 0.42 +1.0
3,568,413 + CA264_15230 0.48 -0.5
3,568,413 + CA264_15230 0.48 -1.1
3,568,414 - CA264_15230 0.48 +0.4
3,568,416 + CA264_15230 0.49 +0.4
3,568,417 - CA264_15230 0.49 -2.4
3,568,485 + CA264_15230 0.58 -1.2
3,568,489 + CA264_15230 0.58 -1.0
3,568,613 + CA264_15230 0.74 -0.4
3,568,627 + CA264_15230 0.76 -1.4
3,568,679 + CA264_15230 0.83 -1.6
3,568,680 - CA264_15230 0.83 -0.3
3,568,692 - CA264_15230 0.85 -1.1
3,568,757 + +2.1
3,568,777 + +0.1
3,568,812 + +0.9
3,568,812 + +0.2
3,568,828 - -0.6
3,568,855 + +0.1
3,568,856 - +1.1
3,568,862 + +1.1
3,568,895 + -0.9
3,568,924 + -0.2
3,568,925 - -0.4
3,568,925 - -0.0
3,568,925 - +0.6
3,568,973 - +2.7
3,568,991 - CA264_15235 0.13 -0.1
3,568,991 - CA264_15235 0.13 -0.0
3,568,991 - CA264_15235 0.13 -0.6
3,568,991 - CA264_15235 0.13 +1.3
3,568,991 - CA264_15235 0.13 -0.1
3,568,996 - CA264_15235 0.14 +0.1
3,568,996 - CA264_15235 0.14 +1.1
3,569,010 - CA264_15235 0.15 +0.4
3,569,097 + CA264_15235 0.24 +0.1
3,569,097 + CA264_15235 0.24 -0.8
3,569,100 - CA264_15235 0.24 -0.3
3,569,123 + CA264_15235 0.27 -1.4
3,569,127 + CA264_15235 0.27 +0.7
3,569,127 + CA264_15235 0.27 -0.8
3,569,128 - CA264_15235 0.27 +0.2
3,569,128 - CA264_15235 0.27 -0.1
3,569,166 + CA264_15235 0.31 -0.2
3,569,166 + CA264_15235 0.31 -0.2
3,569,177 + CA264_15235 0.32 +0.5
3,569,189 - CA264_15235 0.33 +0.8
3,569,201 + CA264_15235 0.35 +0.1
3,569,203 + CA264_15235 0.35 -1.6
3,569,203 + CA264_15235 0.35 +0.5
3,569,239 - CA264_15235 0.38 -0.6
3,569,248 + CA264_15235 0.39 +1.1
3,569,311 + CA264_15235 0.46 +1.3
3,569,312 - CA264_15235 0.46 +0.6
3,569,328 - CA264_15235 0.47 -1.9
3,569,381 + CA264_15235 0.53 -0.8
3,569,467 - CA264_15235 0.61 +0.6
3,569,632 + CA264_15235 0.78 +1.4
3,569,637 - CA264_15235 0.79 +1.0
3,569,637 - CA264_15235 0.79 -0.3
3,569,637 - CA264_15235 0.79 +0.2
3,569,639 - CA264_15235 0.79 -1.9
3,569,639 - CA264_15235 0.79 -0.4
3,569,643 - CA264_15235 0.79 -0.1
3,569,753 - +0.0
3,569,789 + -0.4
3,569,790 - -0.9
3,569,790 - -0.7

Or see this region's nucleotide sequence