Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09385

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09370 and CA264_09375 are separated by 90 nucleotidesCA264_09375 and CA264_09380 are separated by 7 nucleotidesCA264_09380 and CA264_09385 are separated by 208 nucleotidesCA264_09385 and CA264_09390 are separated by 278 nucleotides CA264_09370: CA264_09370 - amidase, at 2,190,457 to 2,192,037 _09370 CA264_09375: CA264_09375 - transcriptional regulator, at 2,192,128 to 2,192,328 _09375 CA264_09380: CA264_09380 - hypothetical protein, at 2,192,336 to 2,192,737 _09380 CA264_09385: CA264_09385 - zinc-dependent metalloprotease, at 2,192,946 to 2,195,435 _09385 CA264_09390: CA264_09390 - oxidoreductase, at 2,195,714 to 2,196,664 _09390 Position (kb) 2192 2193 2194 2195 2196Strain fitness (log2 ratio) -2 -1 0 1 2at 2191.950 kb on + strandat 2191.958 kb on - strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2192.035 kb on + strandat 2192.129 kb on + strandat 2192.168 kb on - strand, within CA264_09375at 2192.168 kb on - strand, within CA264_09375at 2192.308 kb on + strand, within CA264_09375at 2192.315 kb on - strandat 2192.342 kb on + strandat 2192.343 kb on - strandat 2192.415 kb on + strand, within CA264_09380at 2192.415 kb on + strand, within CA264_09380at 2192.444 kb on + strand, within CA264_09380at 2192.451 kb on + strand, within CA264_09380at 2192.464 kb on + strand, within CA264_09380at 2192.465 kb on - strand, within CA264_09380at 2192.532 kb on + strand, within CA264_09380at 2192.557 kb on - strand, within CA264_09380at 2192.634 kb on + strand, within CA264_09380at 2192.709 kb on - strandat 2192.713 kb on - strandat 2192.713 kb on - strandat 2192.716 kb on - strandat 2192.716 kb on - strandat 2192.724 kb on - strandat 2192.834 kb on + strandat 2192.834 kb on + strandat 2192.839 kb on - strandat 2192.865 kb on - strandat 2192.899 kb on + strandat 2192.900 kb on - strandat 2192.900 kb on - strandat 2192.947 kb on + strandat 2192.948 kb on - strandat 2192.948 kb on - strandat 2192.972 kb on + strandat 2192.999 kb on + strandat 2193.000 kb on - strandat 2193.160 kb on + strandat 2193.202 kb on + strand, within CA264_09385at 2193.203 kb on - strand, within CA264_09385at 2193.228 kb on + strand, within CA264_09385at 2193.228 kb on + strand, within CA264_09385at 2193.228 kb on + strand, within CA264_09385at 2193.229 kb on - strand, within CA264_09385at 2193.278 kb on + strand, within CA264_09385at 2193.279 kb on - strand, within CA264_09385at 2193.280 kb on + strand, within CA264_09385at 2193.281 kb on - strand, within CA264_09385at 2193.285 kb on + strand, within CA264_09385at 2193.361 kb on - strand, within CA264_09385at 2193.371 kb on + strand, within CA264_09385at 2193.382 kb on + strand, within CA264_09385at 2193.382 kb on + strand, within CA264_09385at 2193.382 kb on + strand, within CA264_09385at 2193.502 kb on + strand, within CA264_09385at 2193.503 kb on - strand, within CA264_09385at 2193.508 kb on + strand, within CA264_09385at 2193.509 kb on - strand, within CA264_09385at 2193.658 kb on + strand, within CA264_09385at 2193.658 kb on + strand, within CA264_09385at 2193.697 kb on + strand, within CA264_09385at 2193.727 kb on - strand, within CA264_09385at 2193.782 kb on - strand, within CA264_09385at 2193.886 kb on + strand, within CA264_09385at 2193.886 kb on + strand, within CA264_09385at 2193.887 kb on - strand, within CA264_09385at 2193.887 kb on - strand, within CA264_09385at 2193.949 kb on + strand, within CA264_09385at 2193.949 kb on + strand, within CA264_09385at 2193.950 kb on - strand, within CA264_09385at 2193.991 kb on + strand, within CA264_09385at 2194.091 kb on + strand, within CA264_09385at 2194.193 kb on - strand, within CA264_09385at 2194.214 kb on - strand, within CA264_09385at 2194.220 kb on + strand, within CA264_09385at 2194.220 kb on + strand, within CA264_09385at 2194.437 kb on - strand, within CA264_09385at 2194.441 kb on + strand, within CA264_09385at 2194.481 kb on - strand, within CA264_09385at 2194.481 kb on - strand, within CA264_09385at 2194.482 kb on + strand, within CA264_09385at 2194.482 kb on + strand, within CA264_09385at 2194.482 kb on + strand, within CA264_09385at 2194.483 kb on - strand, within CA264_09385at 2194.483 kb on - strand, within CA264_09385at 2194.600 kb on + strand, within CA264_09385at 2194.624 kb on + strand, within CA264_09385at 2194.647 kb on - strand, within CA264_09385at 2194.747 kb on + strand, within CA264_09385at 2194.747 kb on + strand, within CA264_09385at 2194.747 kb on + strand, within CA264_09385at 2194.747 kb on + strand, within CA264_09385at 2194.751 kb on + strand, within CA264_09385at 2194.770 kb on + strand, within CA264_09385at 2194.771 kb on - strand, within CA264_09385at 2194.808 kb on + strand, within CA264_09385at 2194.837 kb on + strand, within CA264_09385at 2194.957 kb on + strand, within CA264_09385at 2194.976 kb on + strand, within CA264_09385at 2194.977 kb on - strand, within CA264_09385at 2194.977 kb on - strand, within CA264_09385at 2195.020 kb on + strand, within CA264_09385at 2195.021 kb on - strand, within CA264_09385at 2195.021 kb on - strand, within CA264_09385at 2195.200 kb on + strandat 2195.201 kb on - strandat 2195.203 kb on + strandat 2195.204 kb on - strandat 2195.275 kb on + strandat 2195.422 kb on + strandat 2195.445 kb on - strandat 2195.457 kb on + strandat 2195.512 kb on + strandat 2195.518 kb on + strandat 2195.531 kb on + strandat 2195.531 kb on + strandat 2195.532 kb on - strandat 2195.536 kb on - strandat 2195.537 kb on + strandat 2195.551 kb on + strandat 2195.675 kb on + strandat 2195.676 kb on - strandat 2195.676 kb on - strandat 2195.683 kb on + strandat 2195.716 kb on - strandat 2195.723 kb on - strandat 2195.813 kb on + strand, within CA264_09390at 2195.813 kb on + strand, within CA264_09390at 2195.903 kb on + strand, within CA264_09390at 2195.904 kb on - strand, within CA264_09390at 2196.067 kb on - strand, within CA264_09390at 2196.067 kb on - strand, within CA264_09390at 2196.159 kb on + strand, within CA264_09390at 2196.160 kb on - strand, within CA264_09390at 2196.209 kb on + strand, within CA264_09390at 2196.209 kb on + strand, within CA264_09390at 2196.210 kb on - strand, within CA264_09390at 2196.234 kb on - strand, within CA264_09390at 2196.354 kb on + strand, within CA264_09390at 2196.355 kb on - strand, within CA264_09390

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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2,191,950 + -0.4
2,191,958 - +0.1
2,191,963 + -0.3
2,191,963 + +0.5
2,191,963 + -0.7
2,191,963 + -2.7
2,191,963 + -0.1
2,191,963 + +0.2
2,191,963 + -0.6
2,191,963 + -0.1
2,191,964 - -1.7
2,191,964 - +0.3
2,191,964 - -0.2
2,191,964 - -0.1
2,191,964 - +0.7
2,191,964 - -0.1
2,191,964 - +1.3
2,191,964 - +1.8
2,191,964 - -0.5
2,192,035 + -0.4
2,192,129 + -0.3
2,192,168 - CA264_09375 0.20 +0.3
2,192,168 - CA264_09375 0.20 -0.4
2,192,308 + CA264_09375 0.90 +0.6
2,192,315 - +0.1
2,192,342 + +0.7
2,192,343 - +1.4
2,192,415 + CA264_09380 0.20 +0.5
2,192,415 + CA264_09380 0.20 -0.3
2,192,444 + CA264_09380 0.27 -0.1
2,192,451 + CA264_09380 0.29 +1.3
2,192,464 + CA264_09380 0.32 -0.3
2,192,465 - CA264_09380 0.32 -0.3
2,192,532 + CA264_09380 0.49 -0.7
2,192,557 - CA264_09380 0.55 -0.3
2,192,634 + CA264_09380 0.74 +0.9
2,192,709 - -1.0
2,192,713 - -0.3
2,192,713 - -0.1
2,192,716 - +0.1
2,192,716 - -1.2
2,192,724 - +0.3
2,192,834 + -1.0
2,192,834 + -0.7
2,192,839 - -0.2
2,192,865 - +0.3
2,192,899 + -0.2
2,192,900 - -0.5
2,192,900 - +0.1
2,192,947 + -0.2
2,192,948 - +1.3
2,192,948 - +0.9
2,192,972 + -0.3
2,192,999 + -0.7
2,193,000 - +0.4
2,193,160 + -0.2
2,193,202 + CA264_09385 0.10 +0.6
2,193,203 - CA264_09385 0.10 +0.8
2,193,228 + CA264_09385 0.11 +0.3
2,193,228 + CA264_09385 0.11 -0.3
2,193,228 + CA264_09385 0.11 +1.8
2,193,229 - CA264_09385 0.11 -0.5
2,193,278 + CA264_09385 0.13 +1.4
2,193,279 - CA264_09385 0.13 +0.0
2,193,280 + CA264_09385 0.13 +0.3
2,193,281 - CA264_09385 0.13 -0.8
2,193,285 + CA264_09385 0.14 +0.7
2,193,361 - CA264_09385 0.17 -0.1
2,193,371 + CA264_09385 0.17 -0.3
2,193,382 + CA264_09385 0.18 -0.3
2,193,382 + CA264_09385 0.18 -0.3
2,193,382 + CA264_09385 0.18 -0.5
2,193,502 + CA264_09385 0.22 +0.2
2,193,503 - CA264_09385 0.22 -0.4
2,193,508 + CA264_09385 0.23 +0.1
2,193,509 - CA264_09385 0.23 +0.5
2,193,658 + CA264_09385 0.29 +0.3
2,193,658 + CA264_09385 0.29 -0.3
2,193,697 + CA264_09385 0.30 -0.6
2,193,727 - CA264_09385 0.31 -0.1
2,193,782 - CA264_09385 0.34 +0.5
2,193,886 + CA264_09385 0.38 -0.4
2,193,886 + CA264_09385 0.38 -1.3
2,193,887 - CA264_09385 0.38 -0.4
2,193,887 - CA264_09385 0.38 +0.2
2,193,949 + CA264_09385 0.40 +0.3
2,193,949 + CA264_09385 0.40 +0.1
2,193,950 - CA264_09385 0.40 -0.2
2,193,991 + CA264_09385 0.42 -0.5
2,194,091 + CA264_09385 0.46 +0.2
2,194,193 - CA264_09385 0.50 -0.1
2,194,214 - CA264_09385 0.51 +0.5
2,194,220 + CA264_09385 0.51 +0.1
2,194,220 + CA264_09385 0.51 +1.1
2,194,437 - CA264_09385 0.60 +0.6
2,194,441 + CA264_09385 0.60 -0.0
2,194,481 - CA264_09385 0.62 -1.3
2,194,481 - CA264_09385 0.62 +0.2
2,194,482 + CA264_09385 0.62 -1.2
2,194,482 + CA264_09385 0.62 -0.1
2,194,482 + CA264_09385 0.62 +1.6
2,194,483 - CA264_09385 0.62 -0.4
2,194,483 - CA264_09385 0.62 +0.8
2,194,600 + CA264_09385 0.66 -0.1
2,194,624 + CA264_09385 0.67 -0.1
2,194,647 - CA264_09385 0.68 +0.1
2,194,747 + CA264_09385 0.72 -0.1
2,194,747 + CA264_09385 0.72 -0.1
2,194,747 + CA264_09385 0.72 -0.4
2,194,747 + CA264_09385 0.72 +0.6
2,194,751 + CA264_09385 0.72 +0.3
2,194,770 + CA264_09385 0.73 -0.0
2,194,771 - CA264_09385 0.73 -0.2
2,194,808 + CA264_09385 0.75 +0.1
2,194,837 + CA264_09385 0.76 -0.4
2,194,957 + CA264_09385 0.81 -0.9
2,194,976 + CA264_09385 0.82 -0.3
2,194,977 - CA264_09385 0.82 +0.3
2,194,977 - CA264_09385 0.82 +0.3
2,195,020 + CA264_09385 0.83 +0.4
2,195,021 - CA264_09385 0.83 -1.2
2,195,021 - CA264_09385 0.83 -0.1
2,195,200 + -0.6
2,195,201 - -0.2
2,195,203 + -0.2
2,195,204 - -1.4
2,195,275 + +0.3
2,195,422 + -0.3
2,195,445 - +0.3
2,195,457 + +1.0
2,195,512 + -0.1
2,195,518 + +1.0
2,195,531 + -0.3
2,195,531 + -1.0
2,195,532 - -0.0
2,195,536 - +0.2
2,195,537 + -0.4
2,195,551 + +0.8
2,195,675 + -1.6
2,195,676 - -0.4
2,195,676 - -0.1
2,195,683 + +0.2
2,195,716 - -1.6
2,195,723 - -0.2
2,195,813 + CA264_09390 0.10 -0.3
2,195,813 + CA264_09390 0.10 -1.7
2,195,903 + CA264_09390 0.20 -0.5
2,195,904 - CA264_09390 0.20 -0.4
2,196,067 - CA264_09390 0.37 -0.3
2,196,067 - CA264_09390 0.37 -0.3
2,196,159 + CA264_09390 0.47 -1.4
2,196,160 - CA264_09390 0.47 -0.7
2,196,209 + CA264_09390 0.52 -0.1
2,196,209 + CA264_09390 0.52 -0.3
2,196,210 - CA264_09390 0.52 -0.3
2,196,234 - CA264_09390 0.55 -0.9
2,196,354 + CA264_09390 0.67 -0.1
2,196,355 - CA264_09390 0.67 +0.4

Or see this region's nucleotide sequence