Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08970

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08965 and CA264_08970 are separated by 213 nucleotidesCA264_08970 and CA264_08975 are separated by 137 nucleotides CA264_08965: CA264_08965 - ketoacyl reductase, at 2,093,491 to 2,094,306 _08965 CA264_08970: CA264_08970 - glycoside hydrolase family 15, at 2,094,520 to 2,096,244 _08970 CA264_08975: CA264_08975 - hypothetical protein, at 2,096,382 to 2,097,305 _08975 Position (kb) 2094 2095 2096 2097Strain fitness (log2 ratio) -2 -1 0 1 2at 2093.525 kb on - strandat 2093.570 kb on - strandat 2093.617 kb on + strand, within CA264_08965at 2093.668 kb on + strand, within CA264_08965at 2093.668 kb on + strand, within CA264_08965at 2093.751 kb on + strand, within CA264_08965at 2093.775 kb on - strand, within CA264_08965at 2093.775 kb on - strand, within CA264_08965at 2093.829 kb on - strand, within CA264_08965at 2093.935 kb on + strand, within CA264_08965at 2093.936 kb on - strand, within CA264_08965at 2093.953 kb on + strand, within CA264_08965at 2094.027 kb on - strand, within CA264_08965at 2094.037 kb on + strand, within CA264_08965at 2094.037 kb on + strand, within CA264_08965at 2094.115 kb on + strand, within CA264_08965at 2094.298 kb on + strandat 2094.298 kb on + strandat 2094.299 kb on - strandat 2094.416 kb on + strandat 2094.484 kb on + strandat 2094.551 kb on + strandat 2094.556 kb on + strandat 2094.779 kb on + strand, within CA264_08970at 2094.818 kb on + strand, within CA264_08970at 2094.939 kb on - strand, within CA264_08970at 2094.964 kb on - strand, within CA264_08970at 2095.069 kb on + strand, within CA264_08970at 2095.077 kb on + strand, within CA264_08970at 2095.077 kb on + strand, within CA264_08970at 2095.085 kb on + strand, within CA264_08970at 2095.085 kb on + strand, within CA264_08970at 2095.086 kb on - strand, within CA264_08970at 2095.086 kb on - strand, within CA264_08970at 2095.086 kb on - strand, within CA264_08970at 2095.161 kb on - strand, within CA264_08970at 2095.273 kb on + strand, within CA264_08970at 2095.274 kb on - strand, within CA264_08970at 2095.298 kb on + strand, within CA264_08970at 2095.502 kb on + strand, within CA264_08970at 2095.502 kb on + strand, within CA264_08970at 2095.554 kb on + strand, within CA264_08970at 2095.634 kb on + strand, within CA264_08970at 2095.710 kb on + strand, within CA264_08970at 2095.828 kb on + strand, within CA264_08970at 2095.829 kb on - strand, within CA264_08970at 2095.834 kb on + strand, within CA264_08970at 2095.898 kb on - strand, within CA264_08970at 2095.970 kb on + strand, within CA264_08970at 2095.970 kb on + strand, within CA264_08970at 2095.970 kb on + strand, within CA264_08970at 2095.970 kb on + strand, within CA264_08970at 2095.970 kb on + strand, within CA264_08970at 2096.151 kb on - strandat 2096.158 kb on + strandat 2096.178 kb on + strandat 2096.178 kb on + strandat 2096.181 kb on - strandat 2096.181 kb on - strandat 2096.250 kb on - strandat 2096.285 kb on - strandat 2096.287 kb on - strandat 2096.287 kb on - strandat 2096.325 kb on + strandat 2096.374 kb on + strandat 2096.383 kb on + strandat 2096.384 kb on - strandat 2096.394 kb on + strandat 2096.509 kb on - strand, within CA264_08975at 2096.583 kb on - strand, within CA264_08975at 2096.584 kb on + strand, within CA264_08975at 2096.850 kb on - strand, within CA264_08975at 2096.852 kb on - strand, within CA264_08975at 2096.937 kb on - strand, within CA264_08975at 2096.941 kb on + strand, within CA264_08975at 2096.941 kb on + strand, within CA264_08975at 2096.941 kb on + strand, within CA264_08975at 2096.951 kb on + strand, within CA264_08975at 2096.974 kb on + strand, within CA264_08975at 2096.974 kb on + strand, within CA264_08975at 2096.981 kb on - strand, within CA264_08975at 2097.096 kb on + strand, within CA264_08975at 2097.158 kb on - strand, within CA264_08975at 2097.158 kb on - strand, within CA264_08975at 2097.184 kb on + strand, within CA264_08975at 2097.191 kb on - strand, within CA264_08975at 2097.214 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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2,093,525 - -0.8
2,093,570 - -0.6
2,093,617 + CA264_08965 0.15 -0.1
2,093,668 + CA264_08965 0.22 -0.5
2,093,668 + CA264_08965 0.22 +0.0
2,093,751 + CA264_08965 0.32 -0.7
2,093,775 - CA264_08965 0.35 -0.5
2,093,775 - CA264_08965 0.35 -0.8
2,093,829 - CA264_08965 0.41 -0.1
2,093,935 + CA264_08965 0.54 +0.2
2,093,936 - CA264_08965 0.55 +2.3
2,093,953 + CA264_08965 0.57 -0.4
2,094,027 - CA264_08965 0.66 -0.3
2,094,037 + CA264_08965 0.67 -0.3
2,094,037 + CA264_08965 0.67 +0.2
2,094,115 + CA264_08965 0.76 -0.1
2,094,298 + +0.6
2,094,298 + -0.4
2,094,299 - -0.9
2,094,416 + +0.5
2,094,484 + -0.5
2,094,551 + -1.1
2,094,556 + +2.3
2,094,779 + CA264_08970 0.15 +0.2
2,094,818 + CA264_08970 0.17 -0.7
2,094,939 - CA264_08970 0.24 -1.4
2,094,964 - CA264_08970 0.26 -1.0
2,095,069 + CA264_08970 0.32 -0.1
2,095,077 + CA264_08970 0.32 -0.6
2,095,077 + CA264_08970 0.32 -0.8
2,095,085 + CA264_08970 0.33 -1.8
2,095,085 + CA264_08970 0.33 -0.4
2,095,086 - CA264_08970 0.33 +0.5
2,095,086 - CA264_08970 0.33 +0.1
2,095,086 - CA264_08970 0.33 -0.1
2,095,161 - CA264_08970 0.37 -0.4
2,095,273 + CA264_08970 0.44 +1.4
2,095,274 - CA264_08970 0.44 -0.5
2,095,298 + CA264_08970 0.45 +0.2
2,095,502 + CA264_08970 0.57 -1.3
2,095,502 + CA264_08970 0.57 -1.2
2,095,554 + CA264_08970 0.60 +0.8
2,095,634 + CA264_08970 0.65 -0.1
2,095,710 + CA264_08970 0.69 +0.5
2,095,828 + CA264_08970 0.76 -0.6
2,095,829 - CA264_08970 0.76 -0.9
2,095,834 + CA264_08970 0.76 -0.2
2,095,898 - CA264_08970 0.80 +0.4
2,095,970 + CA264_08970 0.84 -0.7
2,095,970 + CA264_08970 0.84 -0.1
2,095,970 + CA264_08970 0.84 +0.3
2,095,970 + CA264_08970 0.84 -0.4
2,095,970 + CA264_08970 0.84 +0.1
2,096,151 - -0.5
2,096,158 + -0.6
2,096,178 + +0.6
2,096,178 + +0.3
2,096,181 - +0.1
2,096,181 - -0.6
2,096,250 - -0.7
2,096,285 - -0.2
2,096,287 - -0.3
2,096,287 - -0.2
2,096,325 + +0.3
2,096,374 + +0.1
2,096,383 + -0.3
2,096,384 - +0.1
2,096,394 + -0.6
2,096,509 - CA264_08975 0.14 +0.0
2,096,583 - CA264_08975 0.22 +0.7
2,096,584 + CA264_08975 0.22 -0.1
2,096,850 - CA264_08975 0.51 -0.1
2,096,852 - CA264_08975 0.51 -1.5
2,096,937 - CA264_08975 0.60 -0.5
2,096,941 + CA264_08975 0.60 -1.3
2,096,941 + CA264_08975 0.60 -0.7
2,096,941 + CA264_08975 0.60 -2.4
2,096,951 + CA264_08975 0.62 +0.7
2,096,974 + CA264_08975 0.64 +0.5
2,096,974 + CA264_08975 0.64 +0.0
2,096,981 - CA264_08975 0.65 +0.2
2,097,096 + CA264_08975 0.77 -0.7
2,097,158 - CA264_08975 0.84 +0.2
2,097,158 - CA264_08975 0.84 -1.1
2,097,184 + CA264_08975 0.87 +0.1
2,097,191 - CA264_08975 0.88 -0.6
2,097,214 - -0.2

Or see this region's nucleotide sequence