Strain Fitness in Agrobacterium fabrum C58 around Atu3814

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3813 and Atu3814 are separated by 10 nucleotidesAtu3814 and Atu3815 are separated by 29 nucleotidesAtu3815 and Atu3816 are separated by 282 nucleotides Atu3813: Atu3813 - 3-oxoacyl-ACP reductase, at 909,271 to 910,017 Atu3813 Atu3814: Atu3814 - hypothetical protein, at 910,028 to 910,357 Atu3814 Atu3815: Atu3815 - GntR family transcriptional regulator, at 910,387 to 911,046 Atu3815 Atu3816: Atu3816 - D-threo-aldose 1-dehydrogenase, at 911,329 to 912,375 Atu3816 Position (kb) 910 911Strain fitness (log2 ratio) -3 -2 -1 0 1at 909.097 kb on + strandat 909.097 kb on + strandat 909.117 kb on + strandat 909.135 kb on - strandat 909.179 kb on + strandat 909.181 kb on + strandat 909.278 kb on + strandat 909.334 kb on - strandat 909.411 kb on + strand, within Atu3813at 909.517 kb on + strand, within Atu3813at 909.517 kb on + strand, within Atu3813at 909.557 kb on + strand, within Atu3813at 909.571 kb on - strand, within Atu3813at 909.640 kb on + strand, within Atu3813at 909.640 kb on + strand, within Atu3813at 909.711 kb on + strand, within Atu3813at 909.750 kb on - strand, within Atu3813at 909.956 kb on - strandat 910.013 kb on + strandat 910.019 kb on - strandat 910.029 kb on - strandat 910.054 kb on + strandat 910.055 kb on - strandat 910.055 kb on - strandat 910.062 kb on - strand, within Atu3814at 910.062 kb on - strand, within Atu3814at 910.070 kb on + strand, within Atu3814at 910.112 kb on - strand, within Atu3814at 910.245 kb on - strand, within Atu3814at 910.245 kb on - strand, within Atu3814at 910.245 kb on - strand, within Atu3814at 910.245 kb on - strand, within Atu3814at 910.256 kb on + strand, within Atu3814at 910.264 kb on - strand, within Atu3814at 910.286 kb on + strand, within Atu3814at 910.360 kb on - strandat 910.451 kb on + strandat 910.492 kb on - strand, within Atu3815at 910.493 kb on - strand, within Atu3815at 910.493 kb on - strand, within Atu3815at 910.500 kb on + strand, within Atu3815at 910.528 kb on - strand, within Atu3815at 910.564 kb on - strand, within Atu3815at 910.606 kb on + strand, within Atu3815at 910.607 kb on - strand, within Atu3815at 910.634 kb on + strand, within Atu3815at 910.749 kb on - strand, within Atu3815at 910.832 kb on + strand, within Atu3815at 910.849 kb on + strand, within Atu3815at 910.867 kb on - strand, within Atu3815at 911.001 kb on + strandat 911.026 kb on - strandat 911.046 kb on - strandat 911.105 kb on + strandat 911.144 kb on - strandat 911.146 kb on - strandat 911.254 kb on + strandat 911.283 kb on + strandat 911.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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909,097 + +0.0
909,097 + -0.6
909,117 + -0.7
909,135 - -0.5
909,179 + -0.4
909,181 + -1.2
909,278 + +0.1
909,334 - +0.2
909,411 + Atu3813 0.19 +0.5
909,517 + Atu3813 0.33 +0.5
909,517 + Atu3813 0.33 +0.7
909,557 + Atu3813 0.38 +0.5
909,571 - Atu3813 0.40 +0.6
909,640 + Atu3813 0.49 +0.0
909,640 + Atu3813 0.49 +0.1
909,711 + Atu3813 0.59 -1.4
909,750 - Atu3813 0.64 -0.5
909,956 - +0.5
910,013 + -0.4
910,019 - +0.0
910,029 - +0.8
910,054 + +0.3
910,055 - +0.1
910,055 - -0.1
910,062 - Atu3814 0.10 +0.1
910,062 - Atu3814 0.10 +0.1
910,070 + Atu3814 0.13 +0.2
910,112 - Atu3814 0.25 +0.8
910,245 - Atu3814 0.66 +0.2
910,245 - Atu3814 0.66 +0.0
910,245 - Atu3814 0.66 +0.1
910,245 - Atu3814 0.66 +1.2
910,256 + Atu3814 0.69 +0.2
910,264 - Atu3814 0.72 +0.3
910,286 + Atu3814 0.78 +0.8
910,360 - -0.6
910,451 + -3.3
910,492 - Atu3815 0.16 -0.9
910,493 - Atu3815 0.16 +0.5
910,493 - Atu3815 0.16 -2.2
910,500 + Atu3815 0.17 -1.5
910,528 - Atu3815 0.21 -1.1
910,564 - Atu3815 0.27 -3.4
910,606 + Atu3815 0.33 -2.0
910,607 - Atu3815 0.33 -2.0
910,634 + Atu3815 0.37 -2.8
910,749 - Atu3815 0.55 -1.5
910,832 + Atu3815 0.67 -1.1
910,849 + Atu3815 0.70 -2.3
910,867 - Atu3815 0.73 -1.1
911,001 + -1.8
911,026 - -1.6
911,046 - -1.9
911,105 + -2.9
911,144 - -2.2
911,146 - -0.5
911,254 + +0.1
911,283 + -0.1
911,324 - +0.3

Or see this region's nucleotide sequence